HEADER VIRAL PROTEIN 14-MAY-20 6WZO TITLE STRUCTURE OF SARS-COV-2 NUCLEOCAPSID DIMERIZATION DOMAIN, P1 FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: NUCLEOCAPSID PROTEIN,PROTEIN N; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SARS-COV-2, COVID-19, NUCLEOCAPSID, RNA BINDING, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Q.YE,K.D.CORBETT REVDAT 6 18-OCT-23 6WZO 1 JRNL REVDAT 5 07-APR-21 6WZO 1 JRNL REVDAT 4 09-SEP-20 6WZO 1 JRNL REVDAT 3 24-JUN-20 6WZO 1 JRNL REVDAT 2 17-JUN-20 6WZO 1 JRNL REVDAT 1 27-MAY-20 6WZO 0 JRNL AUTH Q.YE,A.M.V.WEST,S.SILLETTI,K.D.CORBETT JRNL TITL ARCHITECTURE AND SELF-ASSEMBLY OF THE SARS-COV-2 JRNL TITL 2 NUCLEOCAPSID PROTEIN. JRNL REF PROTEIN SCI. V. 29 1890 2020 JRNL REFN ESSN 1469-896X JRNL PMID 32654247 JRNL DOI 10.1002/PRO.3909 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Q.YE,A.M.V.WEST,S.SILLETTI,K.D.CORBETT REMARK 1 TITL ARCHITECTURE AND SELF-ASSEMBLY OF THE SARS-COV-2 REMARK 1 TITL 2 NUCLEOCAPSID PROTEIN. REMARK 1 REF BIORXIV 2020 REMARK 1 REFN ISSN 2692-8205 REMARK 1 PMID 32511359 REMARK 1 DOI 10.1101/2020.05.17.100685 REMARK 1 REFERENCE 2 REMARK 1 AUTH Q.YE,A.M.V.WEST,S.SILLETTI,K.D.CORBETT REMARK 1 TITL ARCHITECTURE AND SELF-ASSEMBLY OF THE SARS-COV-2 UCLEOCAPSID REMARK 1 TITL 2 PROTEIN REMARK 1 REF PROTEIN SCI. 2020 REMARK 1 REFN ESSN 1469-896X REMARK 1 DOI 10.1002/PRO.3909 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.160 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 3 NUMBER OF REFLECTIONS : 96393 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 4733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 66.4300 - 4.4100 0.96 3245 150 0.1473 0.1583 REMARK 3 2 4.4100 - 3.5000 0.92 3081 163 0.1409 0.1450 REMARK 3 3 3.5000 - 3.0600 0.92 3086 167 0.1633 0.1791 REMARK 3 4 3.0600 - 2.7800 0.94 3138 166 0.1528 0.1696 REMARK 3 5 2.7800 - 2.5800 0.95 3172 168 0.1570 0.1605 REMARK 3 6 2.5800 - 2.4300 0.96 3208 168 0.1502 0.1642 REMARK 3 7 2.4300 - 2.3000 0.96 3237 151 0.1492 0.1755 REMARK 3 8 2.3000 - 2.2000 0.95 3199 163 0.1470 0.1544 REMARK 3 9 2.2000 - 2.1200 0.95 3222 167 0.1560 0.1689 REMARK 3 10 2.1200 - 2.0500 0.96 3199 171 0.1507 0.1951 REMARK 3 11 2.0500 - 1.9800 0.96 3212 170 0.1630 0.1830 REMARK 3 12 1.9800 - 1.9300 0.81 2706 155 0.1611 0.1816 REMARK 3 13 1.9300 - 1.8700 0.90 3001 188 0.1546 0.1711 REMARK 3 14 1.8700 - 1.8300 0.91 2999 154 0.1641 0.1975 REMARK 3 15 1.8300 - 1.7900 0.92 3096 168 0.1693 0.1979 REMARK 3 16 1.7900 - 1.7500 0.93 3125 145 0.1748 0.1941 REMARK 3 17 1.7500 - 1.7100 0.92 3115 165 0.1696 0.2029 REMARK 3 18 1.7100 - 1.6800 0.93 3110 146 0.1636 0.2089 REMARK 3 19 1.6800 - 1.6500 0.92 3163 139 0.1585 0.1645 REMARK 3 20 1.6500 - 1.6200 0.94 3099 180 0.1603 0.1901 REMARK 3 21 1.6200 - 1.6000 0.92 3071 166 0.1682 0.1705 REMARK 3 22 1.6000 - 1.5700 0.92 3091 160 0.1701 0.2032 REMARK 3 23 1.5700 - 1.5500 0.92 3072 168 0.1805 0.1846 REMARK 3 24 1.5500 - 1.5300 0.91 3081 141 0.1884 0.2383 REMARK 3 25 1.5300 - 1.5100 0.92 3077 156 0.1902 0.2228 REMARK 3 26 1.5100 - 1.4900 0.89 2990 147 0.2008 0.2172 REMARK 3 27 1.4900 - 1.4700 0.89 2952 175 0.2101 0.2365 REMARK 3 28 1.4700 - 1.4500 0.85 2906 150 0.2248 0.2776 REMARK 3 29 1.4500 - 1.4300 0.73 2428 129 0.2314 0.2492 REMARK 3 30 1.4300 - 1.4200 0.76 2579 97 0.2533 0.2432 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.042 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3591 REMARK 3 ANGLE : 0.888 4858 REMARK 3 CHIRALITY : 0.078 499 REMARK 3 PLANARITY : 0.007 643 REMARK 3 DIHEDRAL : 25.719 1338 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -3.0961 15.7686 -0.7848 REMARK 3 T TENSOR REMARK 3 T11: 0.1624 T22: 0.1003 REMARK 3 T33: 0.1473 T12: 0.0111 REMARK 3 T13: 0.0025 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 2.0772 L22: 0.5775 REMARK 3 L33: 1.2808 L12: 0.3803 REMARK 3 L13: 0.1317 L23: -0.2244 REMARK 3 S TENSOR REMARK 3 S11: -0.0113 S12: -0.1301 S13: 0.0920 REMARK 3 S21: 0.0401 S22: -0.0181 S23: -0.0156 REMARK 3 S31: -0.0525 S32: -0.0083 S33: 0.0315 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -14.6292 15.4242 -13.6150 REMARK 3 T TENSOR REMARK 3 T11: 0.1687 T22: 0.1546 REMARK 3 T33: 0.1728 T12: -0.0080 REMARK 3 T13: -0.0025 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.9601 L22: 0.3698 REMARK 3 L33: 1.3380 L12: 0.0305 REMARK 3 L13: 0.0345 L23: -0.0931 REMARK 3 S TENSOR REMARK 3 S11: -0.0978 S12: 0.1982 S13: 0.1210 REMARK 3 S21: -0.0310 S22: 0.0494 S23: 0.0534 REMARK 3 S31: -0.0357 S32: -0.1226 S33: 0.0502 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 0.6463 38.9612 28.6343 REMARK 3 T TENSOR REMARK 3 T11: 0.1450 T22: 0.1368 REMARK 3 T33: 0.1437 T12: 0.0017 REMARK 3 T13: -0.0002 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 1.8352 L22: 0.5314 REMARK 3 L33: 1.7223 L12: -0.0253 REMARK 3 L13: 0.0224 L23: -0.0615 REMARK 3 S TENSOR REMARK 3 S11: -0.0859 S12: -0.1711 S13: -0.0942 REMARK 3 S21: 0.0256 S22: 0.0491 S23: 0.0732 REMARK 3 S31: 0.0235 S32: -0.1575 S33: 0.0404 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 12.1898 38.6566 15.6900 REMARK 3 T TENSOR REMARK 3 T11: 0.1553 T22: 0.1118 REMARK 3 T33: 0.1517 T12: -0.0084 REMARK 3 T13: -0.0033 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 1.8576 L22: 0.6149 REMARK 3 L33: 1.5765 L12: -0.1818 REMARK 3 L13: -0.2125 L23: -0.1865 REMARK 3 S TENSOR REMARK 3 S11: -0.0184 S12: 0.0989 S13: -0.1075 REMARK 3 S21: -0.0309 S22: -0.0175 S23: -0.0508 REMARK 3 S31: 0.0533 S32: 0.0381 S33: 0.0446 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WZO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1000249274. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96446 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 66.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2GIB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE PH 4.5, 50 MM REMARK 280 SODIUM/POTASSIUM TARTRATE, AND 34% POLYETHYLENE GLYCOL PEG 3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 244 REMARK 465 ASN A 245 REMARK 465 ALA A 246 REMARK 465 THR A 247 REMARK 465 LYS A 248 REMARK 465 LYS A 249 REMARK 465 SER A 250 REMARK 465 ALA A 251 REMARK 465 ALA A 252 REMARK 465 GLU A 253 REMARK 465 ALA A 254 REMARK 465 SER A 255 REMARK 465 LYS A 256 REMARK 465 SER B 244 REMARK 465 ASN B 245 REMARK 465 ALA B 246 REMARK 465 THR B 247 REMARK 465 LYS B 248 REMARK 465 LYS B 249 REMARK 465 SER B 250 REMARK 465 ALA B 251 REMARK 465 ALA B 252 REMARK 465 GLU B 253 REMARK 465 SER C 244 REMARK 465 ASN C 245 REMARK 465 ALA C 246 REMARK 465 THR C 247 REMARK 465 LYS C 248 REMARK 465 LYS C 249 REMARK 465 SER C 250 REMARK 465 ALA C 251 REMARK 465 ALA C 252 REMARK 465 GLU C 253 REMARK 465 ALA C 254 REMARK 465 SER C 255 REMARK 465 LYS C 256 REMARK 465 SER D 244 REMARK 465 ASN D 245 REMARK 465 ALA D 246 REMARK 465 THR D 247 REMARK 465 LYS D 248 REMARK 465 LYS D 249 REMARK 465 SER D 250 REMARK 465 ALA D 251 REMARK 465 ALA D 252 REMARK 465 GLU D 253 REMARK 465 ALA D 254 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 256 CG CD CE NZ REMARK 470 LYS D 256 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE22 GLN A 294 O HOH A 403 1.46 REMARK 500 O HOH D 531 O HOH D 540 1.93 REMARK 500 O HOH C 458 O HOH C 520 1.98 REMARK 500 OE1 GLN D 294 O HOH D 401 2.04 REMARK 500 OD1 ASP A 341 O HOH A 401 2.06 REMARK 500 O HOH B 437 O HOH B 515 2.13 REMARK 500 O HOH A 480 O HOH B 544 2.16 REMARK 500 O HOH D 470 O HOH D 507 2.17 REMARK 500 O HOH C 532 O HOH D 539 2.18 REMARK 500 O HOH D 504 O HOH D 527 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 544 O HOH C 535 1545 2.04 REMARK 500 O HOH A 486 O HOH C 539 1545 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR D 268 85.70 -153.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 560 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH D 554 DISTANCE = 5.95 ANGSTROMS DBREF 6WZO A 247 364 UNP P0DTC9 NCAP_SARS2 247 364 DBREF 6WZO B 247 364 UNP P0DTC9 NCAP_SARS2 247 364 DBREF 6WZO C 247 364 UNP P0DTC9 NCAP_SARS2 247 364 DBREF 6WZO D 247 364 UNP P0DTC9 NCAP_SARS2 247 364 SEQADV 6WZO SER A 244 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZO ASN A 245 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZO ALA A 246 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZO SER B 244 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZO ASN B 245 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZO ALA B 246 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZO SER C 244 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZO ASN C 245 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZO ALA C 246 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZO SER D 244 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZO ASN D 245 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZO ALA D 246 UNP P0DTC9 EXPRESSION TAG SEQRES 1 A 121 SER ASN ALA THR LYS LYS SER ALA ALA GLU ALA SER LYS SEQRES 2 A 121 LYS PRO ARG GLN LYS ARG THR ALA THR LYS ALA TYR ASN SEQRES 3 A 121 VAL THR GLN ALA PHE GLY ARG ARG GLY PRO GLU GLN THR SEQRES 4 A 121 GLN GLY ASN PHE GLY ASP GLN GLU LEU ILE ARG GLN GLY SEQRES 5 A 121 THR ASP TYR LYS HIS TRP PRO GLN ILE ALA GLN PHE ALA SEQRES 6 A 121 PRO SER ALA SER ALA PHE PHE GLY MET SER ARG ILE GLY SEQRES 7 A 121 MET GLU VAL THR PRO SER GLY THR TRP LEU THR TYR THR SEQRES 8 A 121 GLY ALA ILE LYS LEU ASP ASP LYS ASP PRO ASN PHE LYS SEQRES 9 A 121 ASP GLN VAL ILE LEU LEU ASN LYS HIS ILE ASP ALA TYR SEQRES 10 A 121 LYS THR PHE PRO SEQRES 1 B 121 SER ASN ALA THR LYS LYS SER ALA ALA GLU ALA SER LYS SEQRES 2 B 121 LYS PRO ARG GLN LYS ARG THR ALA THR LYS ALA TYR ASN SEQRES 3 B 121 VAL THR GLN ALA PHE GLY ARG ARG GLY PRO GLU GLN THR SEQRES 4 B 121 GLN GLY ASN PHE GLY ASP GLN GLU LEU ILE ARG GLN GLY SEQRES 5 B 121 THR ASP TYR LYS HIS TRP PRO GLN ILE ALA GLN PHE ALA SEQRES 6 B 121 PRO SER ALA SER ALA PHE PHE GLY MET SER ARG ILE GLY SEQRES 7 B 121 MET GLU VAL THR PRO SER GLY THR TRP LEU THR TYR THR SEQRES 8 B 121 GLY ALA ILE LYS LEU ASP ASP LYS ASP PRO ASN PHE LYS SEQRES 9 B 121 ASP GLN VAL ILE LEU LEU ASN LYS HIS ILE ASP ALA TYR SEQRES 10 B 121 LYS THR PHE PRO SEQRES 1 C 121 SER ASN ALA THR LYS LYS SER ALA ALA GLU ALA SER LYS SEQRES 2 C 121 LYS PRO ARG GLN LYS ARG THR ALA THR LYS ALA TYR ASN SEQRES 3 C 121 VAL THR GLN ALA PHE GLY ARG ARG GLY PRO GLU GLN THR SEQRES 4 C 121 GLN GLY ASN PHE GLY ASP GLN GLU LEU ILE ARG GLN GLY SEQRES 5 C 121 THR ASP TYR LYS HIS TRP PRO GLN ILE ALA GLN PHE ALA SEQRES 6 C 121 PRO SER ALA SER ALA PHE PHE GLY MET SER ARG ILE GLY SEQRES 7 C 121 MET GLU VAL THR PRO SER GLY THR TRP LEU THR TYR THR SEQRES 8 C 121 GLY ALA ILE LYS LEU ASP ASP LYS ASP PRO ASN PHE LYS SEQRES 9 C 121 ASP GLN VAL ILE LEU LEU ASN LYS HIS ILE ASP ALA TYR SEQRES 10 C 121 LYS THR PHE PRO SEQRES 1 D 121 SER ASN ALA THR LYS LYS SER ALA ALA GLU ALA SER LYS SEQRES 2 D 121 LYS PRO ARG GLN LYS ARG THR ALA THR LYS ALA TYR ASN SEQRES 3 D 121 VAL THR GLN ALA PHE GLY ARG ARG GLY PRO GLU GLN THR SEQRES 4 D 121 GLN GLY ASN PHE GLY ASP GLN GLU LEU ILE ARG GLN GLY SEQRES 5 D 121 THR ASP TYR LYS HIS TRP PRO GLN ILE ALA GLN PHE ALA SEQRES 6 D 121 PRO SER ALA SER ALA PHE PHE GLY MET SER ARG ILE GLY SEQRES 7 D 121 MET GLU VAL THR PRO SER GLY THR TRP LEU THR TYR THR SEQRES 8 D 121 GLY ALA ILE LYS LEU ASP ASP LYS ASP PRO ASN PHE LYS SEQRES 9 D 121 ASP GLN VAL ILE LEU LEU ASN LYS HIS ILE ASP ALA TYR SEQRES 10 D 121 LYS THR PHE PRO FORMUL 5 HOH *618(H2 O) HELIX 1 AA1 PRO A 258 ARG A 262 5 5 HELIX 2 AA2 ASN A 269 GLY A 275 1 7 HELIX 3 AA3 ASP A 288 GLY A 295 1 8 HELIX 4 AA4 THR A 296 TYR A 298 5 3 HELIX 5 AA5 HIS A 300 GLN A 306 1 7 HELIX 6 AA6 SER A 310 SER A 318 1 9 HELIX 7 AA7 ASN A 345 ILE A 357 1 13 HELIX 8 AA8 ASP A 358 PHE A 363 5 6 HELIX 9 AA9 PRO B 258 ARG B 262 5 5 HELIX 10 AB1 ASN B 269 GLY B 275 1 7 HELIX 11 AB2 ASP B 288 GLY B 295 1 8 HELIX 12 AB3 THR B 296 TYR B 298 5 3 HELIX 13 AB4 HIS B 300 GLN B 306 1 7 HELIX 14 AB5 SER B 310 SER B 318 1 9 HELIX 15 AB6 ASN B 345 ILE B 357 1 13 HELIX 16 AB7 ASP B 358 PHE B 363 5 6 HELIX 17 AB8 PRO C 258 ARG C 262 5 5 HELIX 18 AB9 ASN C 269 GLY C 275 1 7 HELIX 19 AC1 ASP C 288 GLY C 295 1 8 HELIX 20 AC2 THR C 296 TYR C 298 5 3 HELIX 21 AC3 HIS C 300 GLN C 306 1 7 HELIX 22 AC4 SER C 310 SER C 318 1 9 HELIX 23 AC5 ASN C 345 ILE C 357 1 13 HELIX 24 AC6 ASP C 358 PHE C 363 5 6 HELIX 25 AC7 PRO D 258 ARG D 262 5 5 HELIX 26 AC8 ASN D 269 GLY D 275 1 7 HELIX 27 AC9 ASP D 288 GLY D 295 1 8 HELIX 28 AD1 THR D 296 TYR D 298 5 3 HELIX 29 AD2 HIS D 300 GLN D 306 1 7 HELIX 30 AD3 SER D 310 SER D 318 1 9 HELIX 31 AD4 ASN D 345 ILE D 357 1 13 HELIX 32 AD5 ASP D 358 PHE D 363 5 6 SHEET 1 AA1 4 ARG A 319 THR A 325 0 SHEET 2 AA1 4 GLY A 328 LYS A 338 -1 O TRP A 330 N GLU A 323 SHEET 3 AA1 4 GLY B 328 LYS B 338 -1 O LEU B 331 N ILE A 337 SHEET 4 AA1 4 ARG B 319 THR B 325 -1 N GLU B 323 O TRP B 330 SHEET 1 AA2 4 ARG C 319 THR C 325 0 SHEET 2 AA2 4 GLY C 328 LYS C 338 -1 O TRP C 330 N GLU C 323 SHEET 3 AA2 4 GLY D 328 LYS D 338 -1 O ILE D 337 N LEU C 331 SHEET 4 AA2 4 ARG D 319 THR D 325 -1 N THR D 325 O GLY D 328 CRYST1 43.718 50.061 69.337 106.50 90.09 97.15 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022874 0.002867 0.000896 0.00000 SCALE2 0.000000 0.020132 0.006019 0.00000 SCALE3 0.000000 0.000000 0.015053 0.00000