HEADER VIRAL PROTEIN 14-MAY-20 6WZQ TITLE STRUCTURE OF SARS-COV-2 NUCLEOCAPSID DIMERIZATION DOMAIN, P21 FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: NUCLEOCAPSID PROTEIN,PROTEIN N; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SARS-COV-2, COVID-19, NUCLEOCAPSID, RNA BINDING, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Q.YE,K.D.CORBETT REVDAT 6 18-OCT-23 6WZQ 1 JRNL REVDAT 5 07-APR-21 6WZQ 1 JRNL REVDAT 4 09-SEP-20 6WZQ 1 JRNL REVDAT 3 24-JUN-20 6WZQ 1 JRNL REVDAT 2 17-JUN-20 6WZQ 1 JRNL REVDAT 1 27-MAY-20 6WZQ 0 JRNL AUTH Q.YE,A.M.V.WEST,S.SILLETTI,K.D.CORBETT JRNL TITL ARCHITECTURE AND SELF-ASSEMBLY OF THE SARS-COV-2 JRNL TITL 2 NUCLEOCAPSID PROTEIN. JRNL REF PROTEIN SCI. V. 29 1890 2020 JRNL REFN ESSN 1469-896X JRNL PMID 32654247 JRNL DOI 10.1002/PRO.3909 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Q.YE,A.M.V.WEST,S.SILLETTI,K.D.CORBETT REMARK 1 TITL ARCHITECTURE AND SELF-ASSEMBLY OF THE SARS-COV-2 REMARK 1 TITL 2 NUCLEOCAPSID PROTEIN. REMARK 1 REF BIORXIV 2020 REMARK 1 REFN ISSN 2692-8205 REMARK 1 PMID 32511359 REMARK 1 DOI 10.1101/2020.05.17.100685 REMARK 1 REFERENCE 2 REMARK 1 AUTH Q.YE,A.M.V.WEST,S.SILLETTI,K.D.CORBETT REMARK 1 TITL ARCHITECTURE AND SELF-ASSEMBLY OF THE SARS-COV-2 UCLEOCAPSID REMARK 1 TITL 2 PROTEIN REMARK 1 REF PROTEIN SCI. 2020 REMARK 1 REFN ESSN 1469-896X REMARK 1 DOI 10.1002/PRO.3909 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.310 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 80120 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 3919 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 73.9700 - 4.3900 1.00 2826 202 0.1620 0.1576 REMARK 3 2 4.3900 - 3.4900 0.97 2726 155 0.1384 0.1345 REMARK 3 3 3.4900 - 3.0500 0.99 2773 136 0.1647 0.1696 REMARK 3 4 3.0500 - 2.7700 1.00 2756 124 0.1651 0.1884 REMARK 3 5 2.7700 - 2.5700 1.00 2754 156 0.1709 0.1953 REMARK 3 6 2.5700 - 2.4200 1.00 2769 148 0.1682 0.1941 REMARK 3 7 2.4200 - 2.3000 1.00 2726 155 0.1590 0.1784 REMARK 3 8 2.3000 - 2.2000 1.00 2771 136 0.1571 0.1699 REMARK 3 9 2.2000 - 2.1100 1.00 2803 122 0.1645 0.1768 REMARK 3 10 2.1100 - 2.0400 0.98 2673 148 0.1629 0.1896 REMARK 3 11 2.0400 - 1.9800 0.99 2722 150 0.1670 0.1989 REMARK 3 12 1.9800 - 1.9200 0.99 2715 149 0.1664 0.1892 REMARK 3 13 1.9200 - 1.8700 0.99 2733 130 0.1718 0.1956 REMARK 3 14 1.8700 - 1.8200 0.99 2681 151 0.1745 0.2338 REMARK 3 15 1.8200 - 1.7800 0.99 2768 141 0.1860 0.1969 REMARK 3 16 1.7800 - 1.7400 1.00 2722 118 0.1899 0.2105 REMARK 3 17 1.7400 - 1.7100 0.99 2722 147 0.1927 0.2623 REMARK 3 18 1.7100 - 1.6800 1.00 2736 124 0.1859 0.2200 REMARK 3 19 1.6800 - 1.6500 1.00 2757 145 0.1893 0.2143 REMARK 3 20 1.6500 - 1.6200 0.99 2707 141 0.1901 0.2320 REMARK 3 21 1.6200 - 1.5900 1.00 2768 132 0.1921 0.2063 REMARK 3 22 1.5900 - 1.5700 1.00 2751 123 0.2057 0.2455 REMARK 3 23 1.5700 - 1.5500 1.00 2710 115 0.2181 0.2249 REMARK 3 24 1.5500 - 1.5200 1.00 2764 155 0.2236 0.2817 REMARK 3 25 1.5200 - 1.5000 0.96 2577 137 0.2360 0.2693 REMARK 3 26 1.5000 - 1.4800 0.97 2698 125 0.2502 0.2664 REMARK 3 27 1.4800 - 1.4600 0.98 2689 137 0.2632 0.2992 REMARK 3 28 1.4600 - 1.4500 0.89 2404 117 0.2888 0.3096 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.144 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.702 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3785 REMARK 3 ANGLE : 0.922 5127 REMARK 3 CHIRALITY : 0.080 527 REMARK 3 PLANARITY : 0.008 675 REMARK 3 DIHEDRAL : 21.702 1401 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 7.2215 4.1320 24.3224 REMARK 3 T TENSOR REMARK 3 T11: 0.2065 T22: 0.1927 REMARK 3 T33: 0.1663 T12: -0.0275 REMARK 3 T13: -0.0793 T23: 0.0174 REMARK 3 L TENSOR REMARK 3 L11: 1.0158 L22: 3.9989 REMARK 3 L33: 1.3901 L12: -0.0941 REMARK 3 L13: -0.2949 L23: 0.3629 REMARK 3 S TENSOR REMARK 3 S11: 0.0643 S12: -0.1307 S13: -0.0516 REMARK 3 S21: 0.6041 S22: -0.0909 S23: -0.3385 REMARK 3 S31: 0.1470 S32: 0.0766 S33: 0.0096 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 5.5639 14.8146 11.0530 REMARK 3 T TENSOR REMARK 3 T11: 0.1465 T22: 0.1707 REMARK 3 T33: 0.1459 T12: 0.0072 REMARK 3 T13: -0.0108 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.6546 L22: 2.9068 REMARK 3 L33: 1.6932 L12: 0.2912 REMARK 3 L13: 0.2395 L23: 0.1024 REMARK 3 S TENSOR REMARK 3 S11: 0.0222 S12: 0.0280 S13: 0.0414 REMARK 3 S21: -0.2183 S22: -0.0842 S23: -0.0798 REMARK 3 S31: -0.1276 S32: 0.0607 S33: 0.0622 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -34.4151 20.2821 25.2684 REMARK 3 T TENSOR REMARK 3 T11: 0.1545 T22: 0.1965 REMARK 3 T33: 0.1766 T12: 0.0047 REMARK 3 T13: 0.0146 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.4544 L22: 3.3991 REMARK 3 L33: 0.8950 L12: 0.0923 REMARK 3 L13: -0.3500 L23: 0.0809 REMARK 3 S TENSOR REMARK 3 S11: 0.0120 S12: 0.0753 S13: 0.0172 REMARK 3 S21: -0.3503 S22: -0.0369 S23: -0.0848 REMARK 3 S31: -0.0738 S32: -0.0718 S33: 0.0299 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -25.2641 9.7285 15.1022 REMARK 3 T TENSOR REMARK 3 T11: 0.3817 T22: 0.2340 REMARK 3 T33: 0.2940 T12: -0.0033 REMARK 3 T13: 0.2256 T23: -0.0244 REMARK 3 L TENSOR REMARK 3 L11: 1.3047 L22: 2.6961 REMARK 3 L33: 1.4570 L12: -0.2479 REMARK 3 L13: 0.1440 L23: -0.0334 REMARK 3 S TENSOR REMARK 3 S11: -0.0208 S12: 0.1924 S13: -0.0801 REMARK 3 S21: -0.9705 S22: 0.0130 S23: -0.6593 REMARK 3 S31: -0.0296 S32: 0.2059 S33: 0.0256 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6WZQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1000249280. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80163 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 74.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.80200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6WXO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL PH 8.5, 50 MM AMMONIUM REMARK 280 SULFATE, AND 38% POLYETHYLENE GLYCOL (PEG) 3350, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.77300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 228 REMARK 465 LYS A 229 REMARK 465 SER A 230 REMARK 465 SER A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 465 HIS A 234 REMARK 465 HIS A 235 REMARK 465 HIS A 236 REMARK 465 HIS A 237 REMARK 465 GLU A 238 REMARK 465 ASN A 239 REMARK 465 LEU A 240 REMARK 465 TYR A 241 REMARK 465 PHE A 242 REMARK 465 GLN A 243 REMARK 465 SER A 244 REMARK 465 ASN A 245 REMARK 465 ALA A 246 REMARK 465 THR A 247 REMARK 465 LYS A 248 REMARK 465 LYS A 249 REMARK 465 SER A 250 REMARK 465 MET B 228 REMARK 465 LYS B 229 REMARK 465 SER B 230 REMARK 465 SER B 231 REMARK 465 HIS B 232 REMARK 465 HIS B 233 REMARK 465 HIS B 234 REMARK 465 HIS B 235 REMARK 465 HIS B 236 REMARK 465 HIS B 237 REMARK 465 GLU B 238 REMARK 465 ASN B 239 REMARK 465 LEU B 240 REMARK 465 TYR B 241 REMARK 465 PHE B 242 REMARK 465 GLN B 243 REMARK 465 SER B 244 REMARK 465 ASN B 245 REMARK 465 ALA B 246 REMARK 465 THR B 247 REMARK 465 LYS B 248 REMARK 465 LYS B 249 REMARK 465 SER B 250 REMARK 465 MET C 228 REMARK 465 LYS C 229 REMARK 465 SER C 230 REMARK 465 SER C 231 REMARK 465 HIS C 232 REMARK 465 HIS C 233 REMARK 465 HIS C 234 REMARK 465 HIS C 235 REMARK 465 HIS C 236 REMARK 465 HIS C 237 REMARK 465 GLU C 238 REMARK 465 ASN C 239 REMARK 465 LEU C 240 REMARK 465 TYR C 241 REMARK 465 PHE C 242 REMARK 465 GLN C 243 REMARK 465 SER C 244 REMARK 465 ASN C 245 REMARK 465 ALA C 246 REMARK 465 THR C 247 REMARK 465 LYS C 248 REMARK 465 MET D 228 REMARK 465 LYS D 229 REMARK 465 SER D 230 REMARK 465 SER D 231 REMARK 465 HIS D 232 REMARK 465 HIS D 233 REMARK 465 HIS D 234 REMARK 465 HIS D 235 REMARK 465 HIS D 236 REMARK 465 HIS D 237 REMARK 465 GLU D 238 REMARK 465 ASN D 239 REMARK 465 LEU D 240 REMARK 465 TYR D 241 REMARK 465 PHE D 242 REMARK 465 GLN D 243 REMARK 465 SER D 244 REMARK 465 ASN D 245 REMARK 465 ALA D 246 REMARK 465 THR D 247 REMARK 465 LYS D 248 REMARK 465 LYS D 249 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 249 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 558 O HOH B 569 1.98 REMARK 500 O HOH D 501 O HOH D 547 1.99 REMARK 500 O HOH C 547 O HOH C 625 2.02 REMARK 500 O HOH A 580 O HOH D 578 2.10 REMARK 500 O HOH A 595 O HOH A 609 2.13 REMARK 500 O HOH D 525 O HOH D 582 2.15 REMARK 500 O HOH B 614 O HOH B 616 2.17 REMARK 500 O GLN B 281 O HOH B 501 2.17 REMARK 500 O HOH A 583 O HOH A 605 2.19 REMARK 500 O HOH A 556 O HOH A 583 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 586 O HOH C 525 1655 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG D 319 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6WXO RELATED DB: PDB DBREF 6WZQ A 247 364 UNP P0DTC9 NCAP_SARS2 247 364 DBREF 6WZQ B 247 364 UNP P0DTC9 NCAP_SARS2 247 364 DBREF 6WZQ C 247 364 UNP P0DTC9 NCAP_SARS2 247 364 DBREF 6WZQ D 247 364 UNP P0DTC9 NCAP_SARS2 247 364 SEQADV 6WZQ MET A 228 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ LYS A 229 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ SER A 230 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ SER A 231 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ HIS A 232 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ HIS A 233 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ HIS A 234 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ HIS A 235 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ HIS A 236 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ HIS A 237 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ GLU A 238 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ ASN A 239 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ LEU A 240 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ TYR A 241 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ PHE A 242 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ GLN A 243 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ SER A 244 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ ASN A 245 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ ALA A 246 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ MET B 228 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ LYS B 229 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ SER B 230 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ SER B 231 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ HIS B 232 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ HIS B 233 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ HIS B 234 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ HIS B 235 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ HIS B 236 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ HIS B 237 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ GLU B 238 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ ASN B 239 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ LEU B 240 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ TYR B 241 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ PHE B 242 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ GLN B 243 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ SER B 244 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ ASN B 245 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ ALA B 246 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ MET C 228 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ LYS C 229 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ SER C 230 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ SER C 231 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ HIS C 232 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ HIS C 233 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ HIS C 234 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ HIS C 235 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ HIS C 236 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ HIS C 237 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ GLU C 238 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ ASN C 239 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ LEU C 240 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ TYR C 241 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ PHE C 242 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ GLN C 243 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ SER C 244 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ ASN C 245 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ ALA C 246 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ MET D 228 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ LYS D 229 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ SER D 230 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ SER D 231 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ HIS D 232 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ HIS D 233 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ HIS D 234 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ HIS D 235 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ HIS D 236 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ HIS D 237 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ GLU D 238 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ ASN D 239 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ LEU D 240 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ TYR D 241 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ PHE D 242 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ GLN D 243 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ SER D 244 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ ASN D 245 UNP P0DTC9 EXPRESSION TAG SEQADV 6WZQ ALA D 246 UNP P0DTC9 EXPRESSION TAG SEQRES 1 A 137 MET LYS SER SER HIS HIS HIS HIS HIS HIS GLU ASN LEU SEQRES 2 A 137 TYR PHE GLN SER ASN ALA THR LYS LYS SER ALA ALA GLU SEQRES 3 A 137 ALA SER LYS LYS PRO ARG GLN LYS ARG THR ALA THR LYS SEQRES 4 A 137 ALA TYR ASN VAL THR GLN ALA PHE GLY ARG ARG GLY PRO SEQRES 5 A 137 GLU GLN THR GLN GLY ASN PHE GLY ASP GLN GLU LEU ILE SEQRES 6 A 137 ARG GLN GLY THR ASP TYR LYS HIS TRP PRO GLN ILE ALA SEQRES 7 A 137 GLN PHE ALA PRO SER ALA SER ALA PHE PHE GLY MET SER SEQRES 8 A 137 ARG ILE GLY MET GLU VAL THR PRO SER GLY THR TRP LEU SEQRES 9 A 137 THR TYR THR GLY ALA ILE LYS LEU ASP ASP LYS ASP PRO SEQRES 10 A 137 ASN PHE LYS ASP GLN VAL ILE LEU LEU ASN LYS HIS ILE SEQRES 11 A 137 ASP ALA TYR LYS THR PHE PRO SEQRES 1 B 137 MET LYS SER SER HIS HIS HIS HIS HIS HIS GLU ASN LEU SEQRES 2 B 137 TYR PHE GLN SER ASN ALA THR LYS LYS SER ALA ALA GLU SEQRES 3 B 137 ALA SER LYS LYS PRO ARG GLN LYS ARG THR ALA THR LYS SEQRES 4 B 137 ALA TYR ASN VAL THR GLN ALA PHE GLY ARG ARG GLY PRO SEQRES 5 B 137 GLU GLN THR GLN GLY ASN PHE GLY ASP GLN GLU LEU ILE SEQRES 6 B 137 ARG GLN GLY THR ASP TYR LYS HIS TRP PRO GLN ILE ALA SEQRES 7 B 137 GLN PHE ALA PRO SER ALA SER ALA PHE PHE GLY MET SER SEQRES 8 B 137 ARG ILE GLY MET GLU VAL THR PRO SER GLY THR TRP LEU SEQRES 9 B 137 THR TYR THR GLY ALA ILE LYS LEU ASP ASP LYS ASP PRO SEQRES 10 B 137 ASN PHE LYS ASP GLN VAL ILE LEU LEU ASN LYS HIS ILE SEQRES 11 B 137 ASP ALA TYR LYS THR PHE PRO SEQRES 1 C 137 MET LYS SER SER HIS HIS HIS HIS HIS HIS GLU ASN LEU SEQRES 2 C 137 TYR PHE GLN SER ASN ALA THR LYS LYS SER ALA ALA GLU SEQRES 3 C 137 ALA SER LYS LYS PRO ARG GLN LYS ARG THR ALA THR LYS SEQRES 4 C 137 ALA TYR ASN VAL THR GLN ALA PHE GLY ARG ARG GLY PRO SEQRES 5 C 137 GLU GLN THR GLN GLY ASN PHE GLY ASP GLN GLU LEU ILE SEQRES 6 C 137 ARG GLN GLY THR ASP TYR LYS HIS TRP PRO GLN ILE ALA SEQRES 7 C 137 GLN PHE ALA PRO SER ALA SER ALA PHE PHE GLY MET SER SEQRES 8 C 137 ARG ILE GLY MET GLU VAL THR PRO SER GLY THR TRP LEU SEQRES 9 C 137 THR TYR THR GLY ALA ILE LYS LEU ASP ASP LYS ASP PRO SEQRES 10 C 137 ASN PHE LYS ASP GLN VAL ILE LEU LEU ASN LYS HIS ILE SEQRES 11 C 137 ASP ALA TYR LYS THR PHE PRO SEQRES 1 D 137 MET LYS SER SER HIS HIS HIS HIS HIS HIS GLU ASN LEU SEQRES 2 D 137 TYR PHE GLN SER ASN ALA THR LYS LYS SER ALA ALA GLU SEQRES 3 D 137 ALA SER LYS LYS PRO ARG GLN LYS ARG THR ALA THR LYS SEQRES 4 D 137 ALA TYR ASN VAL THR GLN ALA PHE GLY ARG ARG GLY PRO SEQRES 5 D 137 GLU GLN THR GLN GLY ASN PHE GLY ASP GLN GLU LEU ILE SEQRES 6 D 137 ARG GLN GLY THR ASP TYR LYS HIS TRP PRO GLN ILE ALA SEQRES 7 D 137 GLN PHE ALA PRO SER ALA SER ALA PHE PHE GLY MET SER SEQRES 8 D 137 ARG ILE GLY MET GLU VAL THR PRO SER GLY THR TRP LEU SEQRES 9 D 137 THR TYR THR GLY ALA ILE LYS LEU ASP ASP LYS ASP PRO SEQRES 10 D 137 ASN PHE LYS ASP GLN VAL ILE LEU LEU ASN LYS HIS ILE SEQRES 11 D 137 ASP ALA TYR LYS THR PHE PRO HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 B 401 5 HET SO4 C 401 5 HET SO4 C 402 5 HET SO4 D 401 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 6(O4 S 2-) FORMUL 11 HOH *493(H2 O) HELIX 1 AA1 ALA A 251 LYS A 257 1 7 HELIX 2 AA2 PRO A 258 ARG A 262 5 5 HELIX 3 AA3 ASN A 269 GLY A 275 1 7 HELIX 4 AA4 ASP A 288 GLY A 295 1 8 HELIX 5 AA5 THR A 296 TYR A 298 5 3 HELIX 6 AA6 HIS A 300 GLN A 306 1 7 HELIX 7 AA7 SER A 310 SER A 318 1 9 HELIX 8 AA8 ASN A 345 ILE A 357 1 13 HELIX 9 AA9 ASP A 358 PHE A 363 5 6 HELIX 10 AB1 ALA B 252 LYS B 256 1 5 HELIX 11 AB2 LYS B 257 ARG B 262 5 6 HELIX 12 AB3 ASN B 269 GLY B 275 1 7 HELIX 13 AB4 ASP B 288 GLY B 295 1 8 HELIX 14 AB5 THR B 296 TYR B 298 5 3 HELIX 15 AB6 HIS B 300 GLN B 306 1 7 HELIX 16 AB7 SER B 310 SER B 318 1 9 HELIX 17 AB8 ASN B 345 ILE B 357 1 13 HELIX 18 AB9 ASP B 358 PHE B 363 5 6 HELIX 19 AC1 SER C 250 LYS C 256 1 7 HELIX 20 AC2 LYS C 257 ARG C 262 5 6 HELIX 21 AC3 ASN C 269 GLY C 275 1 7 HELIX 22 AC4 ASP C 288 GLY C 295 1 8 HELIX 23 AC5 THR C 296 TYR C 298 5 3 HELIX 24 AC6 HIS C 300 GLN C 306 1 7 HELIX 25 AC7 SER C 310 SER C 318 1 9 HELIX 26 AC8 ASN C 345 ILE C 357 1 13 HELIX 27 AC9 ASP C 358 PHE C 363 5 6 HELIX 28 AD1 ALA D 251 LYS D 256 1 6 HELIX 29 AD2 LYS D 257 ARG D 262 5 6 HELIX 30 AD3 ASN D 269 GLY D 275 1 7 HELIX 31 AD4 ASP D 288 GLY D 295 1 8 HELIX 32 AD5 THR D 296 TYR D 298 5 3 HELIX 33 AD6 HIS D 300 GLN D 306 1 7 HELIX 34 AD7 SER D 310 SER D 318 1 9 HELIX 35 AD8 ASN D 345 ILE D 357 1 13 HELIX 36 AD9 ASP D 358 PHE D 363 5 6 SHEET 1 AA1 4 ARG A 319 THR A 325 0 SHEET 2 AA1 4 GLY A 328 LYS A 338 -1 O THR A 334 N ARG A 319 SHEET 3 AA1 4 GLY B 328 LYS B 338 -1 O ILE B 337 N LEU A 331 SHEET 4 AA1 4 ARG B 319 THR B 325 -1 N ARG B 319 O THR B 334 SHEET 1 AA2 4 ARG C 319 THR C 325 0 SHEET 2 AA2 4 GLY C 328 LYS C 338 -1 O TRP C 330 N GLU C 323 SHEET 3 AA2 4 GLY D 328 LYS D 338 -1 O ILE D 337 N LEU C 331 SHEET 4 AA2 4 ARG D 319 THR D 325 -1 N THR D 325 O GLY D 328 SITE 1 AC1 2 GLY A 275 ARG A 276 SITE 1 AC2 2 TRP A 330 GLU D 280 SITE 1 AC3 1 ARG B 262 SITE 1 AC4 4 ARG C 259 ARG C 262 HOH C 517 HOH C 521 SITE 1 AC5 5 HIS A 300 LYS C 266 ARG C 293 GLN C 294 SITE 2 AC5 5 HOH D 505 SITE 1 AC6 2 ARG D 262 HOH D 542 CRYST1 71.146 43.546 74.233 90.00 94.87 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014056 0.000000 0.001198 0.00000 SCALE2 0.000000 0.022964 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013520 0.00000