data_6WZS # _entry.id 6WZS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6WZS pdb_00006wzs 10.2210/pdb6wzs/pdb WWPDB D_1000248214 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6WZS _pdbx_database_status.recvd_initial_deposition_date 2020-05-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Pichling, P.' 1 ? 'Jones, C.P.' 2 ? ;Ferre-D'Amare, A.R. ; 3 ? 'Tran, B.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Chem Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2451-9456 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 27 _citation.language ? _citation.page_first 1241 _citation.page_last 1249.e4 _citation.title 'Parallel Discovery Strategies Provide a Basis for Riboswitch Ligand Design.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.chembiol.2020.07.021 _citation.pdbx_database_id_PubMed 32795418 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tran, B.' 1 ? primary 'Pichling, P.' 2 ? primary 'Tenney, L.' 3 ? primary 'Connelly, C.M.' 4 ? primary 'Moon, M.H.' 5 ? primary ;Ferre-D'Amare, A.R. ; 6 ? primary 'Schneekloth Jr., J.S.' 7 ? primary 'Jones, C.P.' 8 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6WZS _cell.details ? _cell.formula_units_Z ? _cell.length_a 90.284 _cell.length_a_esd ? _cell.length_b 90.284 _cell.length_b_esd ? _cell.length_c 121.391 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6WZS _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Fusibacterium ulcerans ZTP riboswitch' 24197.434 2 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 4 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 8 ? ? ? ? 4 non-polymer syn '5-amino-1-(pyridin-3-yl)-1H-imidazole-4-carboxamide' 203.201 2 ? ? ? ? 5 water nat water 18.015 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code UAUCAGUUAUAUGACUGACGGAACGUGGAAUUAACCACAUGAAGUAUAACGAUGACAAUGCCGACCGUCUGGGCG _entity_poly.pdbx_seq_one_letter_code_can UAUCAGUUAUAUGACUGACGGAACGUGGAAUUAACCACAUGAAGUAUAACGAUGACAAUGCCGACCGUCUGGGCG _entity_poly.pdbx_strand_id B,A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 A n 1 3 U n 1 4 C n 1 5 A n 1 6 G n 1 7 U n 1 8 U n 1 9 A n 1 10 U n 1 11 A n 1 12 U n 1 13 G n 1 14 A n 1 15 C n 1 16 U n 1 17 G n 1 18 A n 1 19 C n 1 20 G n 1 21 G n 1 22 A n 1 23 A n 1 24 C n 1 25 G n 1 26 U n 1 27 G n 1 28 G n 1 29 A n 1 30 A n 1 31 U n 1 32 U n 1 33 A n 1 34 A n 1 35 C n 1 36 C n 1 37 A n 1 38 C n 1 39 A n 1 40 U n 1 41 G n 1 42 A n 1 43 A n 1 44 G n 1 45 U n 1 46 A n 1 47 U n 1 48 A n 1 49 A n 1 50 C n 1 51 G n 1 52 A n 1 53 U n 1 54 G n 1 55 A n 1 56 C n 1 57 A n 1 58 A n 1 59 U n 1 60 G n 1 61 C n 1 62 C n 1 63 G n 1 64 A n 1 65 C n 1 66 C n 1 67 G n 1 68 U n 1 69 C n 1 70 U n 1 71 G n 1 72 G n 1 73 G n 1 74 C n 1 75 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 75 _pdbx_entity_src_syn.organism_scientific 'Fusobacterium ulcerans' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 861 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code CP028105.1 _struct_ref.pdbx_db_accession 1370545701 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code UAUCAGUUAUAUGACUGACGGAACGUGGAAUUAACCACAUGAAGUAUAACGAUGACAAUGCCGACCGUCUGGGCG _struct_ref.pdbx_align_begin 1213150 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6WZS B 1 ? 75 ? 1370545701 1213150 ? 1213076 ? 1 75 2 1 6WZS A 1 ? 75 ? 1370545701 1213150 ? 1213076 ? 1 75 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 UG4 non-polymer . '5-amino-1-(pyridin-3-yl)-1H-imidazole-4-carboxamide' ? 'C9 H9 N5 O' 203.201 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6WZS _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.95 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 58.32 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '26% (w/v) PEG 4000, 100 mM Tris HCl pH 8.5, 200 mM Lithium Sulfate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-03-11 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98395 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.98395 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6WZS _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.23 _reflns.d_resolution_low 50.000 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 9567 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100.000 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.400 _reflns.pdbx_Rmerge_I_obs 0.088 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 3.900 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.620 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.093 _reflns.pdbx_Rpim_I_all 0.030 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 3.250 3.310 ? ? ? ? ? ? 471 99.400 ? ? ? ? 2.574 ? ? ? ? ? ? ? ? 7.600 ? 0.430 ? ? 2.758 0.968 ? 1 1 0.173 ? ? 3.310 3.370 ? ? ? ? ? ? 474 100.000 ? ? ? ? 1.922 ? ? ? ? ? ? ? ? 8.100 ? 0.420 ? ? 2.052 0.709 ? 2 1 0.463 ? ? 3.370 3.430 ? ? ? ? ? ? 452 100.000 ? ? ? ? 2.116 ? ? ? ? ? ? ? ? 8.900 ? 0.430 ? ? 2.245 0.742 ? 3 1 0.473 ? ? 3.430 3.500 ? ? ? ? ? ? 475 100.000 ? ? ? ? 1.824 ? ? ? ? ? ? ? ? 9.900 ? 0.444 ? ? 1.924 0.608 ? 4 1 0.565 ? ? 3.500 3.580 ? ? ? ? ? ? 464 100.000 ? ? ? ? 1.493 ? ? ? ? ? ? ? ? 10.000 ? 0.445 ? ? 1.574 0.494 ? 5 1 0.654 ? ? 3.580 3.660 ? ? ? ? ? ? 461 100.000 ? ? ? ? 1.274 ? ? ? ? ? ? ? ? 10.200 ? 0.435 ? ? 1.343 0.420 ? 6 1 0.730 ? ? 3.660 3.750 ? ? ? ? ? ? 484 100.000 ? ? ? ? 0.888 ? ? ? ? ? ? ? ? 9.900 ? 0.485 ? ? 0.937 0.295 ? 7 1 0.816 ? ? 3.750 3.850 ? ? ? ? ? ? 452 100.000 ? ? ? ? 0.734 ? ? ? ? ? ? ? ? 10.100 ? 0.433 ? ? 0.774 0.242 ? 8 1 0.861 ? ? 3.850 3.970 ? ? ? ? ? ? 489 100.000 ? ? ? ? 0.576 ? ? ? ? ? ? ? ? 10.000 ? 0.474 ? ? 0.607 0.190 ? 9 1 0.912 ? ? 3.970 4.090 ? ? ? ? ? ? 465 100.000 ? ? ? ? 0.391 ? ? ? ? ? ? ? ? 9.700 ? 0.441 ? ? 0.413 0.132 ? 10 1 0.956 ? ? 4.090 4.240 ? ? ? ? ? ? 472 100.000 ? ? ? ? 0.352 ? ? ? ? ? ? ? ? 9.100 ? 0.482 ? ? 0.373 0.123 ? 11 1 0.964 ? ? 4.240 4.410 ? ? ? ? ? ? 477 100.000 ? ? ? ? 0.276 ? ? ? ? ? ? ? ? 9.600 ? 0.509 ? ? 0.291 0.093 ? 12 1 0.977 ? ? 4.410 4.610 ? ? ? ? ? ? 473 100.000 ? ? ? ? 0.223 ? ? ? ? ? ? ? ? 9.500 ? 0.547 ? ? 0.236 0.076 ? 13 1 0.987 ? ? 4.610 4.850 ? ? ? ? ? ? 482 100.000 ? ? ? ? 0.158 ? ? ? ? ? ? ? ? 10.100 ? 0.638 ? ? 0.166 0.053 ? 14 1 0.991 ? ? 4.850 5.160 ? ? ? ? ? ? 468 100.000 ? ? ? ? 0.133 ? ? ? ? ? ? ? ? 10.000 ? 0.713 ? ? 0.140 0.044 ? 15 1 0.994 ? ? 5.160 5.560 ? ? ? ? ? ? 487 100.000 ? ? ? ? 0.114 ? ? ? ? ? ? ? ? 9.800 ? 0.805 ? ? 0.120 0.038 ? 16 1 0.996 ? ? 5.560 6.110 ? ? ? ? ? ? 495 100.000 ? ? ? ? 0.090 ? ? ? ? ? ? ? ? 9.100 ? 0.962 ? ? 0.096 0.032 ? 17 1 0.995 ? ? 6.110 7.000 ? ? ? ? ? ? 486 100.000 ? ? ? ? 0.073 ? ? ? ? ? ? ? ? 9.200 ? 1.017 ? ? 0.077 0.025 ? 18 1 0.997 ? ? 7.000 8.810 ? ? ? ? ? ? 496 100.000 ? ? ? ? 0.064 ? ? ? ? ? ? ? ? 9.700 ? 1.103 ? ? 0.067 0.022 ? 19 1 0.998 ? ? 8.810 50.000 ? ? ? ? ? ? 544 100.000 ? ? ? ? 0.033 ? ? ? ? ? ? ? ? 8.500 ? 1.096 ? ? 0.035 0.012 ? 20 1 1.000 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 347.790 _refine.B_iso_mean 163.0724 _refine.B_iso_min 74.090 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6WZS _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.23 _refine.ls_d_res_low 47.9500 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9537 _refine.ls_number_reflns_R_free 948 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.7900 _refine.ls_percent_reflns_R_free 9.9400 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2274 _refine.ls_R_factor_R_free 0.2589 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2239 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 5BTP _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 31.3100 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.5400 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 3.23 _refine_hist.d_res_low 47.9500 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 2653 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 122 _refine_hist.pdbx_B_iso_mean_ligand 125.02 _refine_hist.pdbx_B_iso_mean_solvent 135.47 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2609 _refine_hist.pdbx_number_atoms_ligand 42 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.001 ? ? 2950 'X-RAY DIFFRACTION' ? f_angle_d 0.258 ? ? 4584 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 13.151 ? ? 1451 'X-RAY DIFFRACTION' ? f_chiral_restr 0.014 ? ? 608 'X-RAY DIFFRACTION' ? f_plane_restr 0.001 ? ? 128 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 3.2300 3.4000 1318 . 132 1186 99.0000 . . . 0.4180 0.0000 0.3364 . . . . . . . 7 . . . 'X-RAY DIFFRACTION' 3.4000 3.6200 1348 . 131 1217 100.0000 . . . 0.3194 0.0000 0.2870 . . . . . . . 7 . . . 'X-RAY DIFFRACTION' 3.6200 3.9000 1328 . 134 1194 100.0000 . . . 0.3356 0.0000 0.2426 . . . . . . . 7 . . . 'X-RAY DIFFRACTION' 3.9000 4.2900 1355 . 138 1217 100.0000 . . . 0.2616 0.0000 0.1857 . . . . . . . 7 . . . 'X-RAY DIFFRACTION' 4.2900 4.9000 1348 . 131 1217 100.0000 . . . 0.2577 0.0000 0.1724 . . . . . . . 7 . . . 'X-RAY DIFFRACTION' 4.9100 6.1800 1381 . 138 1243 100.0000 . . . 0.2181 0.0000 0.2137 . . . . . . . 7 . . . 'X-RAY DIFFRACTION' 6.1900 47.9500 1459 . 144 1315 100.0000 . . . 0.2489 0.0000 0.2316 . . . . . . . 7 . . . # _struct.entry_id 6WZS _struct.title 'Fusibacterium ulcerans ZTP riboswitch bound to m-1-pyridinyl AICA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6WZS _struct_keywords.text 'Riboswitch, pseudoknot, Purine Biosynthesis, AICAR, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 4 ? J N N 2 ? K N N 2 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 4 ? Q N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A U 16 OP1 ? ? ? 1_555 E MG . MG ? ? B U 16 B MG 103 1_555 ? ? ? ? ? ? ? 2.070 ? ? metalc2 metalc ? ? A G 21 "O3'" ? ? ? 1_555 C K . K ? ? B G 21 B K 101 1_555 ? ? ? ? ? ? ? 2.771 ? ? metalc3 metalc ? ? A G 21 "O2'" ? ? ? 1_555 C K . K ? ? B G 21 B K 101 1_555 ? ? ? ? ? ? ? 2.962 ? ? metalc4 metalc ? ? A G 21 "O3'" ? ? ? 1_555 C K . K ? ? B G 21 B K 101 6_554 ? ? ? ? ? ? ? 2.749 ? ? metalc5 metalc ? ? A G 21 "O2'" ? ? ? 1_555 C K . K ? ? B G 21 B K 101 6_554 ? ? ? ? ? ? ? 2.830 ? ? metalc6 metalc ? ? A A 22 OP2 ? ? ? 1_555 C K . K ? ? B A 22 B K 101 6_554 ? ? ? ? ? ? ? 3.432 ? ? metalc7 metalc ? ? A C 35 OP2 ? ? ? 1_555 E MG . MG ? ? B C 35 B MG 103 1_555 ? ? ? ? ? ? ? 2.105 ? ? metalc8 metalc ? ? A G 41 OP2 ? ? ? 1_555 F MG . MG ? ? B G 41 B MG 104 1_555 ? ? ? ? ? ? ? 2.771 ? ? metalc9 metalc ? ? C K . K ? ? ? 6_554 B A 22 OP2 ? ? B K 101 A A 22 1_555 ? ? ? ? ? ? ? 2.814 ? ? metalc10 metalc ? ? E MG . MG ? ? ? 1_555 I UG4 . O06 ? ? B MG 103 B UG4 107 1_555 ? ? ? ? ? ? ? 2.674 ? ? metalc11 metalc ? ? E MG . MG ? ? ? 1_555 Q HOH . O ? ? B MG 103 B HOH 201 1_555 ? ? ? ? ? ? ? 2.066 ? ? metalc12 metalc ? ? B U 16 OP1 ? ? ? 1_555 L MG . MG ? ? A U 16 A MG 103 1_555 ? ? ? ? ? ? ? 2.384 ? ? metalc13 metalc ? ? B C 35 OP2 ? ? ? 1_555 L MG . MG ? ? A C 35 A MG 103 1_555 ? ? ? ? ? ? ? 2.305 ? ? metalc14 metalc ? ? B U 68 O4 ? ? ? 1_555 K K . K ? ? A U 68 A K 102 1_555 ? ? ? ? ? ? ? 3.143 ? ? hydrog1 hydrog ? ? B G 6 N1 ? ? ? 1_555 B C 50 N3 ? ? A G 6 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 50 O2 ? ? A G 6 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B G 6 O6 ? ? ? 1_555 B C 50 N4 ? ? A G 6 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B U 7 N3 ? ? ? 1_555 B A 49 N1 ? ? A U 7 A A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B U 7 O4 ? ? ? 1_555 B A 49 N6 ? ? A U 7 A A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B U 8 N3 ? ? ? 1_555 B A 48 N1 ? ? A U 8 A A 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B U 8 O4 ? ? ? 1_555 B A 48 N6 ? ? A U 8 A A 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B A 9 N1 ? ? ? 1_555 B U 47 N3 ? ? A A 9 A U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B A 9 N6 ? ? ? 1_555 B U 47 O4 ? ? A A 9 A U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B U 10 N3 ? ? ? 1_555 B A 46 N1 ? ? A U 10 A A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B U 10 O4 ? ? ? 1_555 B A 46 N6 ? ? A U 10 A A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B A 11 N1 ? ? ? 1_555 B U 45 N3 ? ? A A 11 A U 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B A 11 N6 ? ? ? 1_555 B U 45 O4 ? ? A A 11 A U 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B U 12 N3 ? ? ? 1_555 B G 44 O6 ? ? A U 12 A G 44 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog15 hydrog ? ? B U 12 O2 ? ? ? 1_555 B G 44 N1 ? ? A U 12 A G 44 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog16 hydrog ? ? B G 13 N2 ? ? ? 1_555 B A 43 N7 ? ? A G 13 A A 43 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog17 hydrog ? ? B G 13 N3 ? ? ? 1_555 B A 43 N6 ? ? A G 13 A A 43 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog18 hydrog ? ? B A 14 N6 ? ? ? 1_555 B A 42 N3 ? ? A A 14 A A 42 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog19 hydrog ? ? B C 15 N3 ? ? ? 1_555 B G 41 N1 ? ? A C 15 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B C 15 N4 ? ? ? 1_555 B G 41 O6 ? ? A C 15 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B C 15 O2 ? ? ? 1_555 B G 41 N2 ? ? A C 15 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B U 16 N3 ? ? ? 1_555 B U 40 O4 ? ? A U 16 A U 40 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog23 hydrog ? ? B U 16 O2 ? ? ? 1_555 B U 40 N3 ? ? A U 16 A U 40 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog24 hydrog ? ? B G 17 N1 ? ? ? 1_555 B C 69 N3 ? ? A G 17 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B G 17 N2 ? ? ? 1_555 B C 69 O2 ? ? A G 17 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B G 17 O6 ? ? ? 1_555 B C 69 N4 ? ? A G 17 A C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B A 18 N1 ? ? ? 1_555 B U 68 N3 ? ? A A 18 A U 68 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog28 hydrog ? ? B C 19 N3 ? ? ? 1_555 B G 67 N1 ? ? A C 19 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B C 19 N4 ? ? ? 1_555 B G 67 O6 ? ? A C 19 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B C 19 O2 ? ? ? 1_555 B G 67 N2 ? ? A C 19 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B G 20 N1 ? ? ? 1_555 B C 66 N3 ? ? A G 20 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B G 20 N2 ? ? ? 1_555 B C 66 O2 ? ? A G 20 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B G 20 O6 ? ? ? 1_555 B C 66 N4 ? ? A G 20 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B G 21 N1 ? ? ? 1_555 B C 65 N3 ? ? A G 21 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B G 21 N2 ? ? ? 1_555 B C 65 O2 ? ? A G 21 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B G 21 O6 ? ? ? 1_555 B C 65 N4 ? ? A G 21 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? B G 25 N1 ? ? ? 1_555 B C 38 N3 ? ? A G 25 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B G 25 N2 ? ? ? 1_555 B C 38 O2 ? ? A G 25 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B G 25 O6 ? ? ? 1_555 B C 38 N4 ? ? A G 25 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B U 26 N3 ? ? ? 1_555 B A 37 N1 ? ? A U 26 A A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? B U 26 O4 ? ? ? 1_555 B A 37 N6 ? ? A U 26 A A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? B G 27 N1 ? ? ? 1_555 B C 36 N3 ? ? A G 27 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? B G 27 N2 ? ? ? 1_555 B C 36 O2 ? ? A G 27 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? B G 27 O6 ? ? ? 1_555 B C 36 N4 ? ? A G 27 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B G 28 N1 ? ? ? 1_555 B C 35 N3 ? ? A G 28 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B G 28 N2 ? ? ? 1_555 B C 35 O2 ? ? A G 28 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B G 28 O6 ? ? ? 1_555 B C 35 N4 ? ? A G 28 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B G 60 N1 ? ? ? 1_555 B C 74 O2 ? ? A G 60 A C 74 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog49 hydrog ? ? B C 61 N3 ? ? ? 1_555 B G 73 N1 ? ? A C 61 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B C 61 N4 ? ? ? 1_555 B G 73 O6 ? ? A C 61 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B C 61 O2 ? ? ? 1_555 B G 73 N2 ? ? A C 61 A G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B C 62 N3 ? ? ? 1_555 B G 72 N1 ? ? A C 62 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B C 62 N4 ? ? ? 1_555 B G 72 O6 ? ? A C 62 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B C 62 O2 ? ? ? 1_555 B G 72 N2 ? ? A C 62 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B G 63 O6 ? ? ? 1_555 B G 71 N1 ? ? A G 63 A G 71 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog56 hydrog ? ? B G 63 O6 ? ? ? 1_555 B G 72 N1 ? ? A G 63 A G 72 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog57 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 56 N3 ? ? B G 6 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 56 O2 ? ? B G 6 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 56 N4 ? ? B G 6 B C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 55 N1 ? ? B U 7 B A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 55 N6 ? ? B U 7 B A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A A 9 N1 ? ? ? 1_555 A U 47 N3 ? ? B A 9 B U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A A 9 N6 ? ? ? 1_555 A U 47 O4 ? ? B A 9 B U 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A U 10 N3 ? ? ? 1_555 A A 46 N1 ? ? B U 10 B A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A U 10 O4 ? ? ? 1_555 A A 46 N6 ? ? B U 10 B A 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A A 11 N1 ? ? ? 1_555 A U 45 N3 ? ? B A 11 B U 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A A 11 N6 ? ? ? 1_555 A U 45 O4 ? ? B A 11 B U 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A U 12 N3 ? ? ? 1_555 A G 44 O6 ? ? B U 12 B G 44 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog69 hydrog ? ? A U 12 O2 ? ? ? 1_555 A G 44 N1 ? ? B U 12 B G 44 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog70 hydrog ? ? A G 13 N2 ? ? ? 1_555 A A 43 N7 ? ? B G 13 B A 43 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog71 hydrog ? ? A G 13 N3 ? ? ? 1_555 A A 43 N6 ? ? B G 13 B A 43 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog72 hydrog ? ? A A 14 N6 ? ? ? 1_555 A A 42 N3 ? ? B A 14 B A 42 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog73 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 41 N1 ? ? B C 15 B G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 41 O6 ? ? B C 15 B G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 41 N2 ? ? B C 15 B G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A U 16 N3 ? ? ? 1_555 A U 40 O4 ? ? B U 16 B U 40 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog77 hydrog ? ? A U 16 O2 ? ? ? 1_555 A U 40 N3 ? ? B U 16 B U 40 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog78 hydrog ? ? A G 17 N2 ? ? ? 1_555 A A 34 N3 ? ? B G 17 B A 34 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog79 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 69 N3 ? ? B G 17 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 69 O2 ? ? B G 17 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 69 N4 ? ? B G 17 B C 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A A 18 N1 ? ? ? 1_555 A U 68 N3 ? ? B A 18 B U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A A 18 N6 ? ? ? 1_555 A U 68 O4 ? ? B A 18 B U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A C 19 N3 ? ? ? 1_555 A G 67 N1 ? ? B C 19 B G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A C 19 N4 ? ? ? 1_555 A G 67 O6 ? ? B C 19 B G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A C 19 O2 ? ? ? 1_555 A G 67 N2 ? ? B C 19 B G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A G 20 N1 ? ? ? 1_555 A C 66 N3 ? ? B G 20 B C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A G 20 N2 ? ? ? 1_555 A C 66 O2 ? ? B G 20 B C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A G 20 O6 ? ? ? 1_555 A C 66 N4 ? ? B G 20 B C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A G 21 N1 ? ? ? 1_555 A C 65 N3 ? ? B G 21 B C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A G 21 N2 ? ? ? 1_555 A C 65 O2 ? ? B G 21 B C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A G 21 O6 ? ? ? 1_555 A C 65 N4 ? ? B G 21 B C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A A 23 N3 ? ? ? 1_555 B A 64 N6 ? ? B A 23 A A 64 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog94 hydrog ? ? A G 25 N1 ? ? ? 1_555 A C 38 N3 ? ? B G 25 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A G 25 N2 ? ? ? 1_555 A C 38 O2 ? ? B G 25 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 38 N4 ? ? B G 25 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A U 26 N3 ? ? ? 1_555 A A 37 N1 ? ? B U 26 B A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? A U 26 O4 ? ? ? 1_555 A A 37 N6 ? ? B U 26 B A 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? A G 27 N1 ? ? ? 1_555 A C 36 N3 ? ? B G 27 B C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? A G 27 N2 ? ? ? 1_555 A C 36 O2 ? ? B G 27 B C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? A G 27 O6 ? ? ? 1_555 A C 36 N4 ? ? B G 27 B C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 35 N3 ? ? B G 28 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 35 O2 ? ? B G 28 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 35 N4 ? ? B G 28 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? A G 60 N1 ? ? ? 1_555 A C 74 N3 ? ? B G 60 B C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? A G 60 N2 ? ? ? 1_555 A C 74 O2 ? ? B G 60 B C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? A G 60 O6 ? ? ? 1_555 A C 74 N4 ? ? B G 60 B C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? A C 61 N3 ? ? ? 1_555 A G 73 N1 ? ? B C 61 B G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? A C 61 N4 ? ? ? 1_555 A G 73 O6 ? ? B C 61 B G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? A C 61 O2 ? ? ? 1_555 A G 73 N2 ? ? B C 61 B G 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? A C 62 N3 ? ? ? 1_555 A G 72 N1 ? ? B C 62 B G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog112 hydrog ? ? A C 62 N4 ? ? ? 1_555 A G 72 O6 ? ? B C 62 B G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? A C 62 O2 ? ? ? 1_555 A G 72 N2 ? ? B C 62 B G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? A G 63 O6 ? ? ? 1_555 A G 71 N1 ? ? B G 63 B G 71 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog115 hydrog ? ? A G 63 O6 ? ? ? 1_555 A G 72 N1 ? ? B G 63 B G 72 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog116 hydrog ? ? A A 64 N6 ? ? ? 1_555 B A 23 N3 ? ? B A 64 A A 23 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B K 101 ? 5 'binding site for residue K B 101' AC2 Software B K 102 ? 2 'binding site for residue K B 102' AC3 Software B MG 103 ? 4 'binding site for residue MG B 103' AC4 Software B MG 104 ? 1 'binding site for residue MG B 104' AC5 Software B MG 105 ? 2 'binding site for residue MG B 105' AC6 Software B MG 106 ? 2 'binding site for residue MG B 106' AC7 Software B UG4 107 ? 9 'binding site for residue UG4 B 107' AC8 Software A K 101 ? 1 'binding site for residue K A 101' AC9 Software A K 102 ? 1 'binding site for residue K A 102' AD1 Software A MG 103 ? 3 'binding site for residue MG A 103' AD2 Software A MG 105 ? 2 'binding site for residue MG A 105' AD3 Software A MG 106 ? 1 'binding site for residue MG A 106' AD4 Software A UG4 107 ? 7 'binding site for residue UG4 A 107' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 G B 21 ? G A 21 . ? 6_554 ? 2 AC1 5 A B 22 ? A A 22 . ? 6_554 ? 3 AC1 5 G A 21 ? G B 21 . ? 6_554 ? 4 AC1 5 G A 21 ? G B 21 . ? 1_555 ? 5 AC1 5 A A 22 ? A B 22 . ? 6_554 ? 6 AC2 2 G A 67 ? G B 67 . ? 1_555 ? 7 AC2 2 U A 68 ? U B 68 . ? 1_555 ? 8 AC3 4 U A 16 ? U B 16 . ? 1_555 ? 9 AC3 4 C A 35 ? C B 35 . ? 1_555 ? 10 AC3 4 UG4 I . ? UG4 B 107 . ? 1_555 ? 11 AC3 4 HOH Q . ? HOH B 201 . ? 1_555 ? 12 AC4 1 G A 41 ? G B 41 . ? 1_555 ? 13 AC5 2 U A 16 ? U B 16 . ? 1_555 ? 14 AC5 2 U A 40 ? U B 40 . ? 1_555 ? 15 AC6 2 A A 39 ? A B 39 . ? 1_555 ? 16 AC6 2 U A 40 ? U B 40 . ? 1_555 ? 17 AC7 9 U A 16 ? U B 16 . ? 1_555 ? 18 AC7 9 G A 17 ? G B 17 . ? 1_555 ? 19 AC7 9 A A 34 ? A B 34 . ? 1_555 ? 20 AC7 9 C A 35 ? C B 35 . ? 1_555 ? 21 AC7 9 G A 63 ? G B 63 . ? 1_555 ? 22 AC7 9 U A 70 ? U B 70 . ? 1_555 ? 23 AC7 9 G A 71 ? G B 71 . ? 1_555 ? 24 AC7 9 MG E . ? MG B 103 . ? 1_555 ? 25 AC7 9 HOH Q . ? HOH B 201 . ? 1_555 ? 26 AC8 1 G B 28 ? G A 28 . ? 1_555 ? 27 AC9 1 U B 68 ? U A 68 . ? 1_555 ? 28 AD1 3 U B 16 ? U A 16 . ? 1_555 ? 29 AD1 3 C B 35 ? C A 35 . ? 1_555 ? 30 AD1 3 UG4 P . ? UG4 A 107 . ? 1_555 ? 31 AD2 2 G B 44 ? G A 44 . ? 1_555 ? 32 AD2 2 U B 45 ? U A 45 . ? 1_555 ? 33 AD3 1 G B 72 ? G A 72 . ? 1_555 ? 34 AD4 7 U B 16 ? U A 16 . ? 1_555 ? 35 AD4 7 G B 17 ? G A 17 . ? 1_555 ? 36 AD4 7 C B 35 ? C A 35 . ? 1_555 ? 37 AD4 7 G B 63 ? G A 63 . ? 1_555 ? 38 AD4 7 U B 70 ? U A 70 . ? 1_555 ? 39 AD4 7 G B 71 ? G A 71 . ? 1_555 ? 40 AD4 7 MG L . ? MG A 103 . ? 1_555 ? # _atom_sites.entry_id 6WZS _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.011076 _atom_sites.fract_transf_matrix[1][2] 0.006395 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012790 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008238 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C K MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 ? ? ? B . n A 1 2 A 2 2 ? ? ? B . n A 1 3 U 3 3 ? ? ? B . n A 1 4 C 4 4 ? ? ? B . n A 1 5 A 5 5 ? ? ? B . n A 1 6 G 6 6 6 G G B . n A 1 7 U 7 7 7 U U B . n A 1 8 U 8 8 8 U U B . n A 1 9 A 9 9 9 A A B . n A 1 10 U 10 10 10 U U B . n A 1 11 A 11 11 11 A A B . n A 1 12 U 12 12 12 U U B . n A 1 13 G 13 13 13 G G B . n A 1 14 A 14 14 14 A A B . n A 1 15 C 15 15 15 C C B . n A 1 16 U 16 16 16 U U B . n A 1 17 G 17 17 17 G G B . n A 1 18 A 18 18 18 A A B . n A 1 19 C 19 19 19 C C B . n A 1 20 G 20 20 20 G G B . n A 1 21 G 21 21 21 G G B . n A 1 22 A 22 22 22 A A B . n A 1 23 A 23 23 23 A A B . n A 1 24 C 24 24 24 C C B . n A 1 25 G 25 25 25 G G B . n A 1 26 U 26 26 26 U U B . n A 1 27 G 27 27 27 G G B . n A 1 28 G 28 28 28 G G B . n A 1 29 A 29 29 29 A A B . n A 1 30 A 30 30 30 A A B . n A 1 31 U 31 31 31 U U B . n A 1 32 U 32 32 32 U U B . n A 1 33 A 33 33 33 A A B . n A 1 34 A 34 34 34 A A B . n A 1 35 C 35 35 35 C C B . n A 1 36 C 36 36 36 C C B . n A 1 37 A 37 37 37 A A B . n A 1 38 C 38 38 38 C C B . n A 1 39 A 39 39 39 A A B . n A 1 40 U 40 40 40 U U B . n A 1 41 G 41 41 41 G G B . n A 1 42 A 42 42 42 A A B . n A 1 43 A 43 43 43 A A B . n A 1 44 G 44 44 44 G G B . n A 1 45 U 45 45 45 U U B . n A 1 46 A 46 46 46 A A B . n A 1 47 U 47 47 47 U U B . n A 1 48 A 48 47 ? ? ? B A n A 1 49 A 49 47 ? ? ? B B n A 1 50 C 50 47 ? ? ? B C n A 1 51 G 51 47 ? ? ? B D n A 1 52 A 52 47 ? ? ? B E n A 1 53 U 53 47 ? ? ? B F n A 1 54 G 54 47 ? ? ? B G n A 1 55 A 55 49 49 A A B . n A 1 56 C 56 50 50 C C B . n A 1 57 A 57 57 ? ? ? B . n A 1 58 A 58 58 ? ? ? B . n A 1 59 U 59 59 ? ? ? B . n A 1 60 G 60 60 60 G G B . n A 1 61 C 61 61 61 C C B . n A 1 62 C 62 62 62 C C B . n A 1 63 G 63 63 63 G G B . n A 1 64 A 64 64 64 A A B . n A 1 65 C 65 65 65 C C B . n A 1 66 C 66 66 66 C C B . n A 1 67 G 67 67 67 G G B . n A 1 68 U 68 68 68 U U B . n A 1 69 C 69 69 69 C C B . n A 1 70 U 70 70 70 U U B . n A 1 71 G 71 71 71 G G B . n A 1 72 G 72 72 72 G G B . n A 1 73 G 73 73 73 G G B . n A 1 74 C 74 74 74 C C B . n A 1 75 G 75 75 75 G G B . n B 1 1 U 1 1 ? ? ? A . n B 1 2 A 2 2 ? ? ? A . n B 1 3 U 3 3 ? ? ? A . n B 1 4 C 4 4 ? ? ? A . n B 1 5 A 5 5 ? ? ? A . n B 1 6 G 6 6 6 G G A . n B 1 7 U 7 7 7 U U A . n B 1 8 U 8 8 8 U U A . n B 1 9 A 9 9 9 A A A . n B 1 10 U 10 10 10 U U A . n B 1 11 A 11 11 11 A A A . n B 1 12 U 12 12 12 U U A . n B 1 13 G 13 13 13 G G A . n B 1 14 A 14 14 14 A A A . n B 1 15 C 15 15 15 C C A . n B 1 16 U 16 16 16 U U A . n B 1 17 G 17 17 17 G G A . n B 1 18 A 18 18 18 A A A . n B 1 19 C 19 19 19 C C A . n B 1 20 G 20 20 20 G G A . n B 1 21 G 21 21 21 G G A . n B 1 22 A 22 22 22 A A A . n B 1 23 A 23 23 23 A A A . n B 1 24 C 24 24 24 C C A . n B 1 25 G 25 25 25 G G A . n B 1 26 U 26 26 26 U U A . n B 1 27 G 27 27 27 G G A . n B 1 28 G 28 28 28 G G A . n B 1 29 A 29 29 29 A A A . n B 1 30 A 30 30 30 A A A . n B 1 31 U 31 31 31 U U A . n B 1 32 U 32 32 32 U U A . n B 1 33 A 33 33 33 A A A . n B 1 34 A 34 34 34 A A A . n B 1 35 C 35 35 35 C C A . n B 1 36 C 36 36 36 C C A . n B 1 37 A 37 37 37 A A A . n B 1 38 C 38 38 38 C C A . n B 1 39 A 39 39 39 A A A . n B 1 40 U 40 40 40 U U A . n B 1 41 G 41 41 41 G G A . n B 1 42 A 42 42 42 A A A . n B 1 43 A 43 43 43 A A A . n B 1 44 G 44 44 44 G G A . n B 1 45 U 45 45 45 U U A . n B 1 46 A 46 46 46 A A A . n B 1 47 U 47 47 47 U U A . n B 1 48 A 48 48 48 A A A . n B 1 49 A 49 49 49 A A A . n B 1 50 C 50 50 50 C C A . n B 1 51 G 51 51 51 G G A . n B 1 52 A 52 52 ? ? ? A . n B 1 53 U 53 53 ? ? ? A . n B 1 54 G 54 54 ? ? ? A . n B 1 55 A 55 55 ? ? ? A . n B 1 56 C 56 56 ? ? ? A . n B 1 57 A 57 57 ? ? ? A . n B 1 58 A 58 58 ? ? ? A . n B 1 59 U 59 59 ? ? ? A . n B 1 60 G 60 60 60 G G A . n B 1 61 C 61 61 61 C C A . n B 1 62 C 62 62 62 C C A . n B 1 63 G 63 63 63 G G A . n B 1 64 A 64 64 64 A A A . n B 1 65 C 65 65 65 C C A . n B 1 66 C 66 66 66 C C A . n B 1 67 G 67 67 67 G G A . n B 1 68 U 68 68 68 U U A . n B 1 69 C 69 69 69 C C A . n B 1 70 U 70 70 70 U U A . n B 1 71 G 71 71 71 G G A . n B 1 72 G 72 72 72 G G A . n B 1 73 G 73 73 73 G G A . n B 1 74 C 74 74 74 C C A . n B 1 75 G 75 75 75 G G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K 1 101 1 K K B . D 2 K 1 102 2 K K B . E 3 MG 1 103 3 MG MG B . F 3 MG 1 104 12 MG MG B . G 3 MG 1 105 16 MG MG B . H 3 MG 1 106 17 MG MG B . I 4 UG4 1 107 2 UG4 LIG B . J 2 K 1 101 3 K K A . K 2 K 1 102 4 K K A . L 3 MG 1 103 4 MG MG A . M 3 MG 1 104 9 MG MG A . N 3 MG 1 105 11 MG MG A . O 3 MG 1 106 15 MG MG A . P 4 UG4 1 107 1 UG4 LIG A . Q 5 HOH 1 201 2 HOH HOH B . Q 5 HOH 2 202 1 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,F,G,H,I,Q 2 1 B,J,K,L,M,N,O,P # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A U 16 ? B U 16 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 OP2 ? A C 35 ? B C 35 ? 1_555 151.9 ? 2 OP1 ? A U 16 ? B U 16 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O06 ? I UG4 . ? B UG4 107 ? 1_555 71.3 ? 3 OP2 ? A C 35 ? B C 35 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O06 ? I UG4 . ? B UG4 107 ? 1_555 85.2 ? 4 OP1 ? A U 16 ? B U 16 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? Q HOH . ? B HOH 201 ? 1_555 89.0 ? 5 OP2 ? A C 35 ? B C 35 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? Q HOH . ? B HOH 201 ? 1_555 90.8 ? 6 O06 ? I UG4 . ? B UG4 107 ? 1_555 MG ? E MG . ? B MG 103 ? 1_555 O ? Q HOH . ? B HOH 201 ? 1_555 56.8 ? 7 "O3'" ? A G 21 ? B G 21 ? 1_555 K ? C K . ? B K 101 ? 1_555 "O2'" ? A G 21 ? B G 21 ? 1_555 57.1 ? 8 "O3'" ? A G 21 ? B G 21 ? 1_555 K ? C K . ? B K 101 ? 1_555 "O3'" ? A G 21 ? B G 21 ? 1_555 0.0 ? 9 "O2'" ? A G 21 ? B G 21 ? 1_555 K ? C K . ? B K 101 ? 1_555 "O3'" ? A G 21 ? B G 21 ? 1_555 57.1 ? 10 "O3'" ? A G 21 ? B G 21 ? 1_555 K ? C K . ? B K 101 ? 1_555 "O2'" ? A G 21 ? B G 21 ? 1_555 57.1 ? 11 "O2'" ? A G 21 ? B G 21 ? 1_555 K ? C K . ? B K 101 ? 1_555 "O2'" ? A G 21 ? B G 21 ? 1_555 0.0 ? 12 "O3'" ? A G 21 ? B G 21 ? 1_555 K ? C K . ? B K 101 ? 1_555 "O2'" ? A G 21 ? B G 21 ? 1_555 57.1 ? 13 "O3'" ? A G 21 ? B G 21 ? 1_555 K ? C K . ? B K 101 ? 1_555 OP2 ? A A 22 ? B A 22 ? 1_555 40.0 ? 14 "O2'" ? A G 21 ? B G 21 ? 1_555 K ? C K . ? B K 101 ? 1_555 OP2 ? A A 22 ? B A 22 ? 1_555 86.1 ? 15 "O3'" ? A G 21 ? B G 21 ? 1_555 K ? C K . ? B K 101 ? 1_555 OP2 ? A A 22 ? B A 22 ? 1_555 40.0 ? 16 "O2'" ? A G 21 ? B G 21 ? 1_555 K ? C K . ? B K 101 ? 1_555 OP2 ? A A 22 ? B A 22 ? 1_555 86.1 ? 17 "O3'" ? A G 21 ? B G 21 ? 1_555 K ? C K . ? B K 101 ? 1_555 OP2 ? B A 22 ? A A 22 ? 1_555 87.3 ? 18 "O2'" ? A G 21 ? B G 21 ? 1_555 K ? C K . ? B K 101 ? 1_555 OP2 ? B A 22 ? A A 22 ? 1_555 59.6 ? 19 "O3'" ? A G 21 ? B G 21 ? 1_555 K ? C K . ? B K 101 ? 1_555 OP2 ? B A 22 ? A A 22 ? 1_555 87.3 ? 20 "O2'" ? A G 21 ? B G 21 ? 1_555 K ? C K . ? B K 101 ? 1_555 OP2 ? B A 22 ? A A 22 ? 1_555 59.6 ? 21 OP2 ? A A 22 ? B A 22 ? 1_555 K ? C K . ? B K 101 ? 1_555 OP2 ? B A 22 ? A A 22 ? 1_555 78.3 ? 22 OP1 ? B U 16 ? A U 16 ? 1_555 MG ? L MG . ? A MG 103 ? 1_555 OP2 ? B C 35 ? A C 35 ? 1_555 123.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-03-24 2 'Structure model' 1 1 2023-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 8.0312 -22.0063 -55.0792 2.8008 ? -0.6997 ? -1.0157 ? 3.3988 ? 0.5940 ? 1.8931 ? 2.0009 ? 8.8074 ? -6.7042 ? 5.7004 ? -3.4529 ? 5.6627 ? 2.9047 ? -3.8991 ? -0.3613 ? 0.6586 ? -1.9148 ? 1.0384 ? 1.7456 ? -0.9724 ? 0.1068 ? 2 'X-RAY DIFFRACTION' ? refined 26.2370 -24.4188 -38.8440 1.1449 ? 0.1348 ? 0.3138 ? 1.6292 ? 0.3403 ? 0.8124 ? 3.2470 ? 0.5909 ? -0.0091 ? 7.4935 ? -1.1649 ? 4.8265 ? 0.7735 ? 1.1670 ? 0.8434 ? -0.6679 ? 0.8184 ? 0.6221 ? -0.7763 ? -0.4539 ? -0.8384 ? 3 'X-RAY DIFFRACTION' ? refined 21.0203 -49.3721 -43.5672 1.2827 ? -0.1934 ? -0.0917 ? 2.3995 ? -0.4740 ? 0.9969 ? 0.7732 ? -1.0748 ? 1.2655 ? 3.2689 ? 0.8649 ? 5.7763 ? 0.4620 ? 1.5644 ? -1.1499 ? -1.2070 ? -0.5059 ? 0.2250 ? -1.0900 ? -0.0440 ? -0.2405 ? 4 'X-RAY DIFFRACTION' ? refined 18.5934 -54.9094 -43.2518 1.7310 ? -0.1942 ? 0.0829 ? 1.9236 ? -0.4743 ? 1.2772 ? 3.0974 ? 2.0767 ? 2.1295 ? 3.1786 ? -0.0773 ? 2.6597 ? -0.4948 ? 1.0178 ? -1.2884 ? -0.6102 ? 0.8157 ? -0.3730 ? 1.0906 ? -1.0134 ? 0.2586 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? B 6 ? ? ? B 10 ? ? ;chain 'B' and (resid 6 through 10 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? B 11 ? ? ? B 75 ? ? ;chain 'B' and (resid 11 through 75 ) ; 3 'X-RAY DIFFRACTION' 3 ? ? A 6 ? ? ? A 25 ? ? ;chain 'A' and (resid 6 through 25 ) ; 4 'X-RAY DIFFRACTION' 4 ? ? A 26 ? ? ? A 75 ? ? ;chain 'A' and (resid 26 through 75 ) ; # _pdbx_phasing_MR.entry_id 6WZS _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 6.060 _pdbx_phasing_MR.d_res_low_rotation 47.950 _pdbx_phasing_MR.d_res_high_translation 6.060 _pdbx_phasing_MR.d_res_low_translation 47.950 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.17.1_3660 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 2.8.3 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 5 # _pdbx_entry_details.entry_id 6WZS _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A G 6 ? P ? B G 6 P 2 1 Y 1 A G 6 ? OP1 ? B G 6 OP1 3 1 Y 1 A G 6 ? OP2 ? B G 6 OP2 4 1 Y 1 A G 60 ? P ? B G 60 P 5 1 Y 1 A G 60 ? OP1 ? B G 60 OP1 6 1 Y 1 A G 60 ? OP2 ? B G 60 OP2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B U 1 ? A U 1 2 1 Y 1 B A 2 ? A A 2 3 1 Y 1 B U 3 ? A U 3 4 1 Y 1 B C 4 ? A C 4 5 1 Y 1 B A 5 ? A A 5 6 1 Y 1 B A 47 A A A 48 7 1 Y 1 B A 47 B A A 49 8 1 Y 1 B C 47 C A C 50 9 1 Y 1 B G 47 D A G 51 10 1 Y 1 B A 47 E A A 52 11 1 Y 1 B U 47 F A U 53 12 1 Y 1 B G 47 G A G 54 13 1 Y 1 B A 57 ? A A 57 14 1 Y 1 B A 58 ? A A 58 15 1 Y 1 B U 59 ? A U 59 16 1 Y 1 A U 1 ? B U 1 17 1 Y 1 A A 2 ? B A 2 18 1 Y 1 A U 3 ? B U 3 19 1 Y 1 A C 4 ? B C 4 20 1 Y 1 A A 5 ? B A 5 21 1 Y 1 A A 52 ? B A 52 22 1 Y 1 A U 53 ? B U 53 23 1 Y 1 A G 54 ? B G 54 24 1 Y 1 A A 55 ? B A 55 25 1 Y 1 A C 56 ? B C 56 26 1 Y 1 A A 57 ? B A 57 27 1 Y 1 A A 58 ? B A 58 28 1 Y 1 A U 59 ? B U 59 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 K K K N N 114 MG MG MG N N 115 U OP3 O N N 116 U P P N N 117 U OP1 O N N 118 U OP2 O N N 119 U "O5'" O N N 120 U "C5'" C N N 121 U "C4'" C N R 122 U "O4'" O N N 123 U "C3'" C N S 124 U "O3'" O N N 125 U "C2'" C N R 126 U "O2'" O N N 127 U "C1'" C N R 128 U N1 N N N 129 U C2 C N N 130 U O2 O N N 131 U N3 N N N 132 U C4 C N N 133 U O4 O N N 134 U C5 C N N 135 U C6 C N N 136 U HOP3 H N N 137 U HOP2 H N N 138 U "H5'" H N N 139 U "H5''" H N N 140 U "H4'" H N N 141 U "H3'" H N N 142 U "HO3'" H N N 143 U "H2'" H N N 144 U "HO2'" H N N 145 U "H1'" H N N 146 U H3 H N N 147 U H5 H N N 148 U H6 H N N 149 UG4 C10 C Y N 150 UG4 N12 N Y N 151 UG4 C13 C Y N 152 UG4 C15 C Y N 153 UG4 C02 C Y N 154 UG4 C03 C Y N 155 UG4 C04 C N N 156 UG4 C08 C Y N 157 UG4 C11 C Y N 158 UG4 C14 C Y N 159 UG4 N01 N N N 160 UG4 N05 N N N 161 UG4 N07 N Y N 162 UG4 N09 N Y N 163 UG4 O06 O N N 164 UG4 H1 H N N 165 UG4 H2 H N N 166 UG4 H3 H N N 167 UG4 H4 H N N 168 UG4 H5 H N N 169 UG4 H6 H N N 170 UG4 H7 H N N 171 UG4 H8 H N N 172 UG4 H9 H N N 173 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 UG4 N01 C02 sing N N 153 UG4 O06 C04 doub N N 154 UG4 C04 N05 sing N N 155 UG4 C04 C03 sing N N 156 UG4 C02 C03 doub Y N 157 UG4 C02 N09 sing Y N 158 UG4 N12 C13 doub Y N 159 UG4 N12 C11 sing Y N 160 UG4 C13 C14 sing Y N 161 UG4 C11 C10 doub Y N 162 UG4 C14 C15 doub Y N 163 UG4 C03 N07 sing Y N 164 UG4 C10 C15 sing Y N 165 UG4 C10 N09 sing N N 166 UG4 N09 C08 sing Y N 167 UG4 N07 C08 doub Y N 168 UG4 C13 H1 sing N N 169 UG4 C15 H2 sing N N 170 UG4 C08 H3 sing N N 171 UG4 C11 H4 sing N N 172 UG4 C14 H5 sing N N 173 UG4 N01 H6 sing N N 174 UG4 N01 H7 sing N N 175 UG4 N05 H8 sing N N 176 UG4 N05 H9 sing N N 177 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6WZS 'double helix' 6WZS 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 6 1_555 A C 56 1_555 0.189 -0.495 0.122 -9.827 -17.387 -5.028 1 B_G6:C50_B B 6 ? B 50 ? 19 1 1 A U 7 1_555 A A 55 1_555 -0.208 -0.536 0.893 5.491 -10.388 -0.279 2 B_U7:A49_B B 7 ? B 49 ? 20 1 1 A A 9 1_555 A U 47 1_555 -0.402 -0.504 0.493 -14.207 -15.039 -9.987 3 B_A9:U47_B B 9 ? B 47 ? 20 1 1 A U 10 1_555 A A 46 1_555 -0.312 0.006 0.097 12.738 -20.669 -2.218 4 B_U10:A46_B B 10 ? B 46 ? 20 1 1 A A 11 1_555 A U 45 1_555 -0.270 0.367 0.090 1.710 -11.584 9.541 5 B_A11:U45_B B 11 ? B 45 ? 20 1 1 A U 12 1_555 A G 44 1_555 2.743 -0.500 -0.211 0.311 -19.173 0.693 6 B_U12:G44_B B 12 ? B 44 ? 28 1 1 A G 13 1_555 A A 43 1_555 6.818 -4.624 0.184 -9.338 -17.260 -10.575 7 B_G13:A43_B B 13 ? B 43 ? 11 10 1 A A 14 1_555 A A 42 1_555 -6.597 -4.613 0.337 -3.577 -3.164 -18.937 8 B_A14:A42_B B 14 ? B 42 ? ? 10 1 A C 15 1_555 A G 41 1_555 -0.351 -0.119 -0.156 6.677 -1.604 3.775 9 B_C15:G41_B B 15 ? B 41 ? 19 1 1 A U 16 1_555 A U 40 1_555 2.652 -2.172 -0.334 15.046 -24.236 4.404 10 B_U16:U40_B B 16 ? B 40 ? 16 1 1 A G 17 1_555 A C 69 1_555 -0.290 -0.509 -0.058 -2.206 -13.426 -2.964 11 B_G17:C69_B B 17 ? B 69 ? 19 1 1 A A 18 1_555 A U 68 1_555 -0.214 -0.073 0.269 2.614 -10.070 3.132 12 B_A18:U68_B B 18 ? B 68 ? 20 1 1 A C 19 1_555 A G 67 1_555 -0.145 -0.145 0.122 8.050 -10.404 5.877 13 B_C19:G67_B B 19 ? B 67 ? 19 1 1 A G 20 1_555 A C 66 1_555 -0.265 -0.438 -0.117 3.058 -11.490 0.942 14 B_G20:C66_B B 20 ? B 66 ? 19 1 1 A G 21 1_555 A C 65 1_555 0.188 -0.171 -0.350 -13.453 -16.250 -2.360 15 B_G21:C65_B B 21 ? B 65 ? 19 1 1 B A 23 1_555 A A 64 1_555 6.126 -0.430 0.397 -13.993 12.899 48.473 16 A_A23:A64_B A 23 ? B 64 ? ? ? 1 B A 64 1_555 A A 23 1_555 -6.371 -1.453 0.033 10.518 7.991 56.074 17 A_A64:A23_B A 64 ? B 23 ? ? ? 1 B C 65 1_555 B G 21 1_555 0.889 -0.270 -0.097 9.376 -12.069 2.818 18 A_C65:G21_A A 65 ? A 21 ? 19 1 1 B C 66 1_555 B G 20 1_555 0.452 -0.275 0.044 1.129 -15.078 8.117 19 A_C66:G20_A A 66 ? A 20 ? 19 1 1 B G 67 1_555 B C 19 1_555 -0.251 0.243 -0.191 -15.613 -17.263 7.843 20 A_G67:C19_A A 67 ? A 19 ? 19 1 1 B U 68 1_555 B A 18 1_555 1.531 0.302 0.087 -5.845 -13.443 9.991 21 A_U68:A18_A A 68 ? A 18 ? ? 1 1 B C 69 1_555 B G 17 1_555 0.761 -0.017 0.053 0.372 -12.004 5.686 22 A_C69:G17_A A 69 ? A 17 ? 19 1 1 A G 25 1_555 A C 38 1_555 -2.053 -0.345 -0.046 -9.079 -4.270 13.034 23 B_G25:C38_B B 25 ? B 38 ? 19 1 1 A U 26 1_555 A A 37 1_555 -1.072 0.029 0.229 0.977 4.716 6.449 24 B_U26:A37_B B 26 ? B 37 ? 20 1 1 A G 27 1_555 A C 36 1_555 0.564 0.313 -0.328 -1.345 1.522 2.070 25 B_G27:C36_B B 27 ? B 36 ? 19 1 1 A G 28 1_555 A C 35 1_555 -0.060 0.253 -0.061 -7.541 -3.881 1.135 26 B_G28:C35_B B 28 ? B 35 ? 19 1 1 A G 60 1_555 A C 74 1_555 -1.326 -0.410 -0.141 5.167 -22.357 -0.844 27 B_G60:C74_B B 60 ? B 74 ? 19 1 1 A C 61 1_555 A G 73 1_555 0.140 -0.029 -0.338 5.188 -16.444 0.493 28 B_C61:G73_B B 61 ? B 73 ? 19 1 1 A C 62 1_555 A G 72 1_555 0.497 -0.399 0.334 -0.940 6.280 -12.756 29 B_C62:G72_B B 62 ? B 72 ? 19 1 1 A G 63 1_555 A G 71 1_555 -1.983 -3.588 1.318 -4.529 -45.094 114.682 30 B_G63:G71_B B 63 ? B 71 ? ? ? 1 B G 6 1_555 B C 50 1_555 -0.002 -0.271 0.141 5.845 -13.661 0.791 31 A_G6:C50_A A 6 ? A 50 ? 19 1 1 B U 7 1_555 B A 49 1_555 0.195 -0.070 -0.991 8.704 -1.326 6.427 32 A_U7:A49_A A 7 ? A 49 ? 20 1 1 B U 8 1_555 B A 48 1_555 -0.934 -0.227 0.349 9.117 -21.743 -6.233 33 A_U8:A48_A A 8 ? A 48 ? 20 1 1 B A 9 1_555 B U 47 1_555 -0.145 0.167 0.351 -2.661 -6.775 2.010 34 A_A9:U47_A A 9 ? A 47 ? 20 1 1 B U 10 1_555 B A 46 1_555 0.020 0.326 0.161 14.443 -4.229 4.771 35 A_U10:A46_A A 10 ? A 46 ? 20 1 1 B A 11 1_555 B U 45 1_555 -0.157 0.103 -0.183 5.683 -14.882 8.505 36 A_A11:U45_A A 11 ? A 45 ? 20 1 1 B U 12 1_555 B G 44 1_555 1.864 -0.195 -0.296 6.294 -15.157 8.633 37 A_U12:G44_A A 12 ? A 44 ? 28 1 1 B G 13 1_555 B A 43 1_555 7.018 -4.977 -0.332 -9.772 -6.947 -16.378 38 A_G13:A43_A A 13 ? A 43 ? 11 10 1 B A 14 1_555 B A 42 1_555 -6.617 -4.555 0.221 -3.263 -6.634 -16.978 39 A_A14:A42_A A 14 ? A 42 ? ? 10 1 B C 15 1_555 B G 41 1_555 -0.109 -0.386 -0.063 5.301 -5.709 -1.491 40 A_C15:G41_A A 15 ? A 41 ? 19 1 1 B U 16 1_555 B U 40 1_555 1.556 -1.812 0.114 18.553 -21.960 4.948 41 A_U16:U40_A A 16 ? A 40 ? 16 1 1 B G 25 1_555 B C 38 1_555 -1.871 -0.393 -0.430 -4.765 -11.035 0.899 42 A_G25:C38_A A 25 ? A 38 ? 19 1 1 B U 26 1_555 B A 37 1_555 -0.745 0.197 -0.217 6.158 0.838 12.889 43 A_U26:A37_A A 26 ? A 37 ? 20 1 1 B G 27 1_555 B C 36 1_555 0.506 0.002 -0.625 3.217 -5.410 1.135 44 A_G27:C36_A A 27 ? A 36 ? 19 1 1 B G 28 1_555 B C 35 1_555 -0.039 0.157 -0.095 -5.009 -10.161 3.515 45 A_G28:C35_A A 28 ? A 35 ? 19 1 1 B G 60 1_555 B C 74 1_555 -2.096 -0.044 0.281 0.596 -21.756 6.595 46 A_G60:C74_A A 60 ? A 74 ? ? 1 1 B C 61 1_555 B G 73 1_555 0.072 0.214 -0.147 5.333 -17.474 3.860 47 A_C61:G73_A A 61 ? A 73 ? 19 1 1 B C 62 1_555 B G 72 1_555 0.334 0.015 0.243 -1.267 8.418 -2.574 48 A_C62:G72_A A 62 ? A 72 ? 19 1 1 B G 63 1_555 B G 71 1_555 -0.962 -3.802 0.743 -4.721 -49.064 113.752 49 A_G63:G71_A A 63 ? A 71 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 6 1_555 A C 56 1_555 A U 7 1_555 A A 55 1_555 -0.129 -1.578 3.390 -7.753 -3.774 29.591 -2.182 -1.381 3.481 -7.199 14.789 30.795 1 BB_G6U7:A49C50_BB B 6 ? B 50 ? B 7 ? B 49 ? 1 A A 9 1_555 A U 47 1_555 A U 10 1_555 A A 46 1_555 0.653 -1.790 2.949 1.886 3.140 27.369 -4.423 -0.966 2.768 6.599 -3.963 27.608 2 BB_A9U10:A46U47_BB B 9 ? B 47 ? B 10 ? B 46 ? 1 A U 10 1_555 A A 46 1_555 A A 11 1_555 A U 45 1_555 0.594 -1.100 3.269 -1.121 18.319 35.437 -3.585 -0.994 2.419 27.907 1.708 39.772 3 BB_U10A11:U45A46_BB B 10 ? B 46 ? B 11 ? B 45 ? 1 A A 11 1_555 A U 45 1_555 A U 12 1_555 A G 44 1_555 -0.089 -1.194 3.291 3.135 5.828 45.452 -2.026 0.381 3.111 7.496 -4.032 45.906 4 BB_A11U12:G44U45_BB B 11 ? B 45 ? B 12 ? B 44 ? 1 A U 12 1_555 A G 44 1_555 A G 13 1_555 A A 43 1_555 -1.013 -1.133 3.604 2.727 6.647 53.352 -1.697 1.303 3.399 7.364 -3.022 53.799 5 BB_U12G13:A43G44_BB B 12 ? B 44 ? B 13 ? B 43 ? 1 A G 13 1_555 A A 43 1_555 A A 14 1_555 A A 42 1_555 -0.943 -0.373 3.471 -8.970 -2.171 -26.906 1.265 -4.008 2.970 4.501 -18.596 -28.417 6 BB_G13A14:A42A43_BB B 13 ? B 43 ? B 14 ? B 42 ? 1 A A 14 1_555 A A 42 1_555 A C 15 1_555 A G 41 1_555 1.211 -0.947 2.958 1.975 4.330 62.064 -1.095 -1.091 2.927 4.193 -1.912 62.228 7 BB_A14C15:G41A42_BB B 14 ? B 42 ? B 15 ? B 41 ? 1 A C 15 1_555 A G 41 1_555 A U 16 1_555 A U 40 1_555 0.999 -1.314 3.219 5.468 0.728 36.253 -2.189 -0.837 3.304 1.162 -8.726 36.657 8 BB_C15U16:U40G41_BB B 15 ? B 41 ? B 16 ? B 40 ? 1 A G 17 1_555 A C 69 1_555 A A 18 1_555 A U 68 1_555 -0.999 -2.168 2.834 -9.584 11.506 30.752 -5.154 0.487 2.121 20.259 16.875 34.125 9 BB_G17A18:U68C69_BB B 17 ? B 69 ? B 18 ? B 68 ? 1 A A 18 1_555 A U 68 1_555 A C 19 1_555 A G 67 1_555 0.265 -1.591 3.040 1.283 6.483 32.403 -3.767 -0.274 2.688 11.469 -2.269 33.053 10 BB_A18C19:G67U68_BB B 18 ? B 68 ? B 19 ? B 67 ? 1 A C 19 1_555 A G 67 1_555 A G 20 1_555 A C 66 1_555 -0.383 -1.339 3.136 1.519 14.624 30.877 -4.301 0.862 2.269 25.718 -2.671 34.122 11 BB_C19G20:C66G67_BB B 19 ? B 67 ? B 20 ? B 66 ? 1 A G 20 1_555 A C 66 1_555 A G 21 1_555 A C 65 1_555 0.012 -1.451 3.580 -0.233 17.697 35.435 -4.234 -0.045 2.596 27.091 0.357 39.482 12 BB_G20G21:C65C66_BB B 20 ? B 66 ? B 21 ? B 65 ? 1 A G 21 1_555 A C 65 1_555 B A 23 1_555 A A 64 1_555 -0.238 0.100 2.865 -2.824 10.307 79.723 -0.161 0.119 2.865 8.007 2.194 80.317 13 BA_G21A23:A64C65_BB B 21 ? B 65 ? A 23 ? B 64 ? 1 B A 23 1_555 A A 64 1_555 B A 64 1_555 A A 23 1_555 0.085 3.510 6.053 0.897 48.157 79.278 0.333 -0.020 6.981 35.010 -0.652 90.656 14 AA_A23A64:A23A64_BB A 23 ? B 64 ? A 64 ? B 23 ? 1 B A 64 1_555 A A 23 1_555 B C 65 1_555 B G 21 1_555 0.029 0.538 3.060 -1.513 8.146 86.349 0.223 -0.053 3.092 5.941 1.103 86.668 15 AA_A64C65:G21A23_AB A 64 ? B 23 ? A 65 ? A 21 ? 1 B C 65 1_555 B G 21 1_555 B C 66 1_555 B G 20 1_555 0.338 -1.634 3.071 2.440 10.747 33.531 -4.085 -0.243 2.465 18.033 -4.093 35.247 16 AA_C65C66:G20G21_AA A 65 ? A 21 ? A 66 ? A 20 ? 1 B C 66 1_555 B G 20 1_555 B G 67 1_555 B C 19 1_555 0.046 -1.494 3.105 3.986 19.261 30.988 -4.585 0.383 1.881 32.297 -6.683 36.573 17 AA_C66G67:C19G20_AA A 66 ? A 20 ? A 67 ? A 19 ? 1 B G 67 1_555 B C 19 1_555 B U 68 1_555 B A 18 1_555 0.303 -0.973 2.924 -0.478 6.694 36.545 -2.304 -0.531 2.706 10.565 0.755 37.135 18 AA_G67U68:A18C19_AA A 67 ? A 19 ? A 68 ? A 18 ? 1 B U 68 1_555 B A 18 1_555 B C 69 1_555 B G 17 1_555 0.835 -2.236 2.738 8.435 11.017 28.275 -5.679 -0.353 1.921 21.027 -16.098 31.434 19 AA_U68C69:G17A18_AA A 68 ? A 18 ? A 69 ? A 17 ? 1 A G 25 1_555 A C 38 1_555 A U 26 1_555 A A 37 1_555 -0.682 -1.338 3.001 -4.743 7.848 34.448 -3.202 0.502 2.708 12.968 7.839 35.612 20 BB_G25U26:A37C38_BB B 25 ? B 38 ? B 26 ? B 37 ? 1 A U 26 1_555 A A 37 1_555 A G 27 1_555 A C 36 1_555 -0.223 -1.461 3.066 2.562 18.001 35.478 -3.905 0.578 2.095 27.432 -3.904 39.732 21 BB_U26G27:C36A37_BB B 26 ? B 37 ? B 27 ? B 36 ? 1 A G 27 1_555 A C 36 1_555 A G 28 1_555 A C 35 1_555 0.319 -1.954 3.244 -0.906 13.124 29.242 -5.602 -0.720 2.178 24.492 1.690 32.006 22 BB_G27G28:C35C36_BB B 27 ? B 36 ? B 28 ? B 35 ? 1 A G 60 1_555 A C 74 1_555 A C 61 1_555 A G 73 1_555 -0.056 -1.439 3.240 -0.806 0.356 41.408 -2.073 -0.005 3.229 0.503 1.140 41.416 23 BB_G60C61:G73C74_BB B 60 ? B 74 ? B 61 ? B 73 ? 1 A C 61 1_555 A G 73 1_555 A C 62 1_555 A G 72 1_555 -0.760 -1.929 3.542 -2.542 10.300 35.618 -4.424 0.851 2.936 16.395 4.046 37.115 24 BB_C61C62:G72G73_BB B 61 ? B 73 ? B 62 ? B 72 ? 1 A C 62 1_555 A G 72 1_555 A G 63 1_555 A G 71 1_555 -1.442 -2.625 -0.368 -161.019 55.575 101.978 -1.295 0.778 0.032 28.138 81.524 173.924 25 BB_C62G63:G71G72_BB B 62 ? B 72 ? B 63 ? B 71 ? 1 B G 6 1_555 B C 50 1_555 B U 7 1_555 B A 49 1_555 -1.402 -2.522 3.582 -1.218 7.178 22.575 -8.492 3.014 2.731 17.753 3.013 23.706 26 AA_G6U7:A49C50_AA A 6 ? A 50 ? A 7 ? A 49 ? 1 B U 7 1_555 B A 49 1_555 B U 8 1_555 B A 48 1_555 -2.181 -1.997 4.266 -12.982 -7.926 28.355 -1.433 0.378 5.126 -14.902 24.407 32.103 27 AA_U7U8:A48A49_AA A 7 ? A 49 ? A 8 ? A 48 ? 1 B U 8 1_555 B A 48 1_555 B A 9 1_555 B U 47 1_555 0.388 -1.171 3.416 -2.243 14.132 38.129 -3.231 -0.803 2.801 20.761 3.296 40.631 28 AA_U8A9:U47A48_AA A 8 ? A 48 ? A 9 ? A 47 ? 1 B A 9 1_555 B U 47 1_555 B U 10 1_555 B A 46 1_555 0.244 -1.216 2.990 0.752 2.013 29.201 -2.798 -0.335 2.907 3.986 -1.490 29.278 29 AA_A9U10:A46U47_AA A 9 ? A 47 ? A 10 ? A 46 ? 1 B U 10 1_555 B A 46 1_555 B A 11 1_555 B U 45 1_555 0.266 -1.234 3.146 1.972 19.060 33.398 -3.960 -0.189 2.169 30.269 -3.133 38.368 30 AA_U10A11:U45A46_AA A 10 ? A 46 ? A 11 ? A 45 ? 1 B A 11 1_555 B U 45 1_555 B U 12 1_555 B G 44 1_555 0.397 -1.317 3.287 1.990 0.889 40.593 -1.995 -0.349 3.273 1.280 -2.866 40.649 31 AA_A11U12:G44U45_AA A 11 ? A 45 ? A 12 ? A 44 ? 1 B U 12 1_555 B G 44 1_555 B G 13 1_555 B A 43 1_555 -1.604 -1.074 3.856 2.988 5.449 59.289 -1.397 1.787 3.676 5.492 -3.012 59.584 32 AA_U12G13:A43G44_AA A 12 ? A 44 ? A 13 ? A 43 ? 1 B G 13 1_555 B A 43 1_555 B A 14 1_555 B A 42 1_555 -0.397 -0.524 3.394 -7.910 1.986 -27.817 0.595 -2.590 3.191 -4.023 -16.022 -28.965 33 AA_G13A14:A42A43_AA A 13 ? A 43 ? A 14 ? A 42 ? 1 B A 14 1_555 B A 42 1_555 B C 15 1_555 B G 41 1_555 0.992 -0.921 3.064 0.552 3.256 64.180 -0.996 -0.910 3.027 3.062 -0.519 64.256 34 AA_A14C15:G41A42_AA A 14 ? A 42 ? A 15 ? A 41 ? 1 B C 15 1_555 B G 41 1_555 B U 16 1_555 B U 40 1_555 1.044 -1.883 2.937 1.705 2.074 31.644 -3.779 -1.630 2.862 3.795 -3.119 31.754 35 AA_C15U16:U40G41_AA A 15 ? A 41 ? A 16 ? A 40 ? 1 B G 25 1_555 B C 38 1_555 B U 26 1_555 B A 37 1_555 0.273 -1.259 3.091 -4.915 8.930 36.150 -3.005 -1.000 2.658 14.050 7.734 37.514 36 AA_G25U26:A37C38_AA A 25 ? A 38 ? A 26 ? A 37 ? 1 B U 26 1_555 B A 37 1_555 B G 27 1_555 B C 36 1_555 -0.706 -1.128 3.330 3.646 16.897 32.448 -3.952 1.587 2.384 27.905 -6.021 36.656 37 AA_U26G27:C36A37_AA A 26 ? A 37 ? A 27 ? A 36 ? 1 B G 27 1_555 B C 36 1_555 B G 28 1_555 B C 35 1_555 0.568 -1.689 3.225 -1.920 14.639 31.083 -4.862 -1.225 2.194 25.588 3.356 34.333 38 AA_G27G28:C35C36_AA A 27 ? A 36 ? A 28 ? A 35 ? 1 B G 60 1_555 B C 74 1_555 B C 61 1_555 B G 73 1_555 -0.322 -1.272 3.496 -1.303 -6.670 41.062 -1.013 0.302 3.658 -9.431 1.843 41.597 39 AA_G60C61:G73C74_AA A 60 ? A 74 ? A 61 ? A 73 ? 1 B C 61 1_555 B G 73 1_555 B C 62 1_555 B G 72 1_555 -0.509 -1.954 3.508 -3.035 7.810 32.869 -4.624 0.379 3.011 13.531 5.258 33.892 40 AA_C61C62:G72G73_AA A 61 ? A 73 ? A 62 ? A 72 ? 1 B C 62 1_555 B G 72 1_555 B G 63 1_555 B G 71 1_555 -1.297 -2.481 0.287 -164.411 42.435 166.778 -1.245 0.630 0.358 21.226 82.238 178.827 41 AA_C62G63:G71G72_AA A 62 ? A 72 ? A 63 ? A 71 ? # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id UG4 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id UG4 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 'MAGNESIUM ION' MG 4 '5-amino-1-(pyridin-3-yl)-1H-imidazole-4-carboxamide' UG4 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5BTP _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'isothermal titration calorimetry' _pdbx_struct_assembly_auth_evidence.details 'Ligand Bound at 0.6 uM affinity' #