HEADER STRUCTURAL PROTEIN 15-MAY-20 6X05 TITLE NUP133 (AA55-481) FROM S. CEREVISIAE BOUND BY VHH-SAN4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPORIN NUP133; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NUCLEAR PORE PROTEIN NUP133; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: VHH-SAN4; COMPND 8 CHAIN: K; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: NUP133, RAT3, YKR082W, YKR402; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: LOBSTR; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 13 ORGANISM_TAXID: 30538; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: LOBSTR KEYWDS STRUCTURAL PROTEIN, NUCLEOPORIN, NANOBODY EXPDTA X-RAY DIFFRACTION AUTHOR S.A.NORDEEN,T.U.SCHWARTZ REVDAT 3 18-OCT-23 6X05 1 REMARK REVDAT 2 10-MAR-21 6X05 1 COMPND REMARK HELIX SHEET REVDAT 2 2 1 ATOM REVDAT 1 09-DEC-20 6X05 0 JRNL AUTH S.A.NORDEEN,D.L.TURMAN,T.U.SCHWARTZ JRNL TITL YEAST NUP84-NUP133 COMPLEX STRUCTURE DETAILS FLEXIBILITY AND JRNL TITL 2 REVEALS CONSERVATION OF THE MEMBRANE ANCHORING ALPS MOTIF. JRNL REF NAT COMMUN V. 11 6060 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 33247142 JRNL DOI 10.1038/S41467-020-19885-5 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 35967 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1843 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.5700 - 4.9400 1.00 2830 154 0.1788 0.2173 REMARK 3 2 4.9400 - 3.9200 1.00 2682 144 0.1316 0.1441 REMARK 3 3 3.9200 - 3.4200 1.00 2646 143 0.1523 0.2217 REMARK 3 4 3.4200 - 3.1100 1.00 2631 142 0.1635 0.2053 REMARK 3 5 3.1100 - 2.8900 1.00 2637 143 0.1941 0.2443 REMARK 3 6 2.8900 - 2.7200 1.00 2601 140 0.1884 0.2440 REMARK 3 7 2.7200 - 2.5800 1.00 2560 138 0.1890 0.2449 REMARK 3 8 2.5800 - 2.4700 1.00 2621 142 0.1900 0.2649 REMARK 3 9 2.4700 - 2.3700 1.00 2606 140 0.1975 0.2364 REMARK 3 10 2.3700 - 2.2900 1.00 2559 139 0.2053 0.2716 REMARK 3 11 2.2900 - 2.2200 1.00 2591 139 0.2059 0.2503 REMARK 3 12 2.2200 - 2.1600 1.00 2586 140 0.2266 0.2901 REMARK 3 13 2.1600 - 2.1000 1.00 2574 139 0.2454 0.2839 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.219 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.108 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4002 REMARK 3 ANGLE : 1.048 5421 REMARK 3 CHIRALITY : 0.060 614 REMARK 3 PLANARITY : 0.006 688 REMARK 3 DIHEDRAL : 12.712 538 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2705 43.1821 7.5482 REMARK 3 T TENSOR REMARK 3 T11: 0.2678 T22: 0.2870 REMARK 3 T33: 0.3096 T12: 0.0447 REMARK 3 T13: 0.0126 T23: 0.0570 REMARK 3 L TENSOR REMARK 3 L11: 4.7211 L22: 8.3582 REMARK 3 L33: 1.7407 L12: -4.6353 REMARK 3 L13: -2.3188 L23: 2.5578 REMARK 3 S TENSOR REMARK 3 S11: 0.2437 S12: 0.0702 S13: 0.7250 REMARK 3 S21: -0.2868 S22: 0.0763 S23: -0.2974 REMARK 3 S31: -0.3161 S32: 0.0214 S33: -0.3378 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 124 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5690 47.9289 9.6389 REMARK 3 T TENSOR REMARK 3 T11: 0.3719 T22: 0.3252 REMARK 3 T33: 0.4769 T12: 0.1037 REMARK 3 T13: 0.0187 T23: 0.0625 REMARK 3 L TENSOR REMARK 3 L11: 7.7382 L22: 1.1107 REMARK 3 L33: 8.1986 L12: 2.2959 REMARK 3 L13: 7.1598 L23: 2.7836 REMARK 3 S TENSOR REMARK 3 S11: -0.4964 S12: 0.4714 S13: 0.6855 REMARK 3 S21: -0.1071 S22: 0.0182 S23: 0.0866 REMARK 3 S31: -0.3947 S32: 0.5860 S33: 0.4704 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 318 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.2186 37.9167 21.0230 REMARK 3 T TENSOR REMARK 3 T11: 0.3083 T22: 0.3785 REMARK 3 T33: 0.3036 T12: 0.1042 REMARK 3 T13: 0.0426 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 1.7487 L22: 5.8914 REMARK 3 L33: 0.4937 L12: -1.6635 REMARK 3 L13: 0.6821 L23: -1.0245 REMARK 3 S TENSOR REMARK 3 S11: -0.1510 S12: -0.1317 S13: 0.3132 REMARK 3 S21: 0.1679 S22: 0.1334 S23: 0.1519 REMARK 3 S31: -0.2764 S32: -0.2834 S33: 0.0057 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 319 THROUGH 481 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7547 23.0860 17.6002 REMARK 3 T TENSOR REMARK 3 T11: 0.2066 T22: 0.1602 REMARK 3 T33: 0.1534 T12: 0.0204 REMARK 3 T13: 0.0010 T23: -0.0231 REMARK 3 L TENSOR REMARK 3 L11: 1.3166 L22: 1.7853 REMARK 3 L33: 2.4008 L12: -0.1748 REMARK 3 L13: -0.3976 L23: -1.6656 REMARK 3 S TENSOR REMARK 3 S11: -0.0719 S12: 0.0746 S13: -0.0103 REMARK 3 S21: -0.0563 S22: 0.0745 S23: 0.0621 REMARK 3 S31: 0.0409 S32: -0.1422 S33: -0.0002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'K' AND (RESID 3 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9579 -8.8537 36.8567 REMARK 3 T TENSOR REMARK 3 T11: 0.2274 T22: 0.2924 REMARK 3 T33: 0.2805 T12: -0.0293 REMARK 3 T13: 0.0026 T23: 0.0480 REMARK 3 L TENSOR REMARK 3 L11: 3.8466 L22: 6.9624 REMARK 3 L33: 2.9265 L12: -1.1075 REMARK 3 L13: 1.0432 L23: -2.8042 REMARK 3 S TENSOR REMARK 3 S11: 0.0106 S12: 0.0790 S13: -0.1008 REMARK 3 S21: -0.4841 S22: 0.3110 S23: 0.6662 REMARK 3 S31: 0.2754 S32: -0.5774 S33: -0.3121 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'K' AND (RESID 41 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2009 -2.1154 41.2683 REMARK 3 T TENSOR REMARK 3 T11: 0.3990 T22: 0.2128 REMARK 3 T33: 0.2810 T12: 0.0656 REMARK 3 T13: 0.0106 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 8.5469 L22: 6.2099 REMARK 3 L33: 6.9838 L12: -2.2750 REMARK 3 L13: -1.9719 L23: 3.0071 REMARK 3 S TENSOR REMARK 3 S11: 0.3569 S12: -0.2629 S13: 0.5921 REMARK 3 S21: 0.3161 S22: -0.1177 S23: 0.1499 REMARK 3 S31: -1.3154 S32: -0.0809 S33: -0.2697 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'K' AND (RESID 61 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2099 -10.2300 41.3860 REMARK 3 T TENSOR REMARK 3 T11: 0.1669 T22: 0.1310 REMARK 3 T33: 0.1757 T12: 0.0088 REMARK 3 T13: -0.0048 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 5.5127 L22: 5.2616 REMARK 3 L33: 7.5539 L12: -1.6412 REMARK 3 L13: 0.1574 L23: -1.0252 REMARK 3 S TENSOR REMARK 3 S11: -0.0991 S12: -0.0307 S13: 0.1220 REMARK 3 S21: 0.0124 S22: 0.1587 S23: -0.0840 REMARK 3 S31: -0.0488 S32: 0.1493 S33: -0.0447 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'K' AND (RESID 99 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.3596 0.2056 37.6113 REMARK 3 T TENSOR REMARK 3 T11: 0.2007 T22: 0.2240 REMARK 3 T33: 0.2415 T12: 0.0492 REMARK 3 T13: 0.0556 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 2.7422 L22: 8.2786 REMARK 3 L33: 7.8648 L12: -0.8119 REMARK 3 L13: 1.0045 L23: -7.2831 REMARK 3 S TENSOR REMARK 3 S11: -0.0650 S12: -0.1582 S13: 0.0395 REMARK 3 S21: 0.2271 S22: 0.3680 S23: 0.6395 REMARK 3 S31: -0.1711 S32: -0.3403 S33: -0.2891 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6X05 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1000248951. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39093 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 59.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4Q9T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 3,350, 0.2M AMMONIUM SULFATE, REMARK 280 0.1M BIS-TRIS PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 46.69050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 77.34650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.69050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 77.34650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 54 REMARK 465 PHE A 55 REMARK 465 ASP A 56 REMARK 465 ASN A 57 REMARK 465 THR A 113 REMARK 465 GLN A 114 REMARK 465 LYS A 115 REMARK 465 ASP A 116 REMARK 465 THR A 117 REMARK 465 PRO A 118 REMARK 465 SER A 126 REMARK 465 ASP A 127 REMARK 465 ASP A 128 REMARK 465 ASN A 129 REMARK 465 ASP A 130 REMARK 465 GLU A 131 REMARK 465 ILE A 132 REMARK 465 LYS A 250 REMARK 465 PRO A 251 REMARK 465 PHE A 252 REMARK 465 LYS A 253 REMARK 465 LEU A 254 REMARK 465 GLY A 255 REMARK 465 ILE A 256 REMARK 465 TRP A 257 REMARK 465 SER A 258 REMARK 465 LYS A 259 REMARK 465 ILE A 260 REMARK 465 PHE A 261 REMARK 465 ASN A 262 REMARK 465 THR A 263 REMARK 465 MET A 404 REMARK 465 GLU A 405 REMARK 465 ASN A 406 REMARK 465 ALA A 407 REMARK 465 ASN A 408 REMARK 465 ASP A 409 REMARK 465 THR A 410 REMARK 465 ASN A 411 REMARK 465 LYS A 432 REMARK 465 LEU A 433 REMARK 465 ASP A 434 REMARK 465 SER A 435 REMARK 465 SER A 436 REMARK 465 TYR A 437 REMARK 465 SER A 438 REMARK 465 MET A 439 REMARK 465 ARG A 440 REMARK 465 GLN K 1 REMARK 465 LEU K 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 GLN A 73 CG CD OE1 NE2 REMARK 470 ARG A 125 CG CD NE CZ NH1 NH2 REMARK 470 MET A 146 CG SD CE REMARK 470 ASP A 147 CG OD1 OD2 REMARK 470 GLU A 148 CG CD OE1 OE2 REMARK 470 GLN A 158 CG CD OE1 NE2 REMARK 470 ASP A 159 CG OD1 OD2 REMARK 470 LYS A 278 CG CD CE NZ REMARK 470 ASN A 301 CG OD1 ND2 REMARK 470 LYS A 394 CG CD CE NZ REMARK 470 GLU A 412 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU K 6 N GLY K 115 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 101 -147.20 -110.17 REMARK 500 GLU A 148 67.17 61.39 REMARK 500 ASP A 209 -78.20 -111.63 REMARK 500 ASN A 235 -155.41 -86.82 REMARK 500 LEU A 248 39.94 -88.78 REMARK 500 ASN A 301 7.47 42.38 REMARK 500 ASP A 309 87.91 -154.84 REMARK 500 GLU A 342 -7.71 69.12 REMARK 500 ASP A 461 -159.64 -126.20 REMARK 500 REMARK 500 REMARK: NULL DBREF 6X05 A 55 481 UNP P36161 NU133_YEAST 55 481 DBREF 6X05 K 1 122 PDB 6X05 6X05 1 122 SEQADV 6X05 GLY A 54 UNP P36161 EXPRESSION TAG SEQRES 1 A 428 GLY PHE ASP ASN SER LYS VAL PHE THR GLU ASN ASN ARG SEQRES 2 A 428 TYR ILE VAL LYS THR LEU GLN THR ASP TYR SER SER GLY SEQRES 3 A 428 PHE SER ASN ASP ASP GLU LEU ASN GLY TYR ILE ASP MET SEQRES 4 A 428 GLN ILE GLY TYR GLY LEU VAL ASN ASP HIS LYS LYS VAL SEQRES 5 A 428 TYR ILE TRP ASN ILE HIS SER THR GLN LYS ASP THR PRO SEQRES 6 A 428 TYR ILE THR VAL PRO PHE ARG SER ASP ASP ASN ASP GLU SEQRES 7 A 428 ILE ALA VAL ALA PRO ARG CYS ILE LEU THR PHE PRO ALA SEQRES 8 A 428 THR MET ASP GLU SER PRO LEU ALA LEU ASN PRO ASN ASP SEQRES 9 A 428 GLN ASP GLU THR GLY GLY LEU ILE ILE ILE LYS GLY SER SEQRES 10 A 428 LYS ALA ILE TYR TYR GLU ASP ILE ASN SER ILE ASN ASN SEQRES 11 A 428 LEU ASN PHE LYS LEU SER GLU LYS PHE SER HIS GLU LEU SEQRES 12 A 428 GLU LEU PRO ILE ASN SER SER GLY GLY GLU LYS CYS ASP SEQRES 13 A 428 LEU MET LEU ASN CYS GLU PRO ALA GLY ILE VAL LEU SER SEQRES 14 A 428 THR ASN MET GLY ARG ILE PHE PHE ILE THR ILE ARG ASN SEQRES 15 A 428 SER MET GLY LYS PRO GLN LEU LYS LEU GLY LYS LEU LEU SEQRES 16 A 428 ASN LYS PRO PHE LYS LEU GLY ILE TRP SER LYS ILE PHE SEQRES 17 A 428 ASN THR ASN SER SER VAL VAL SER LEU ARG ASN GLY PRO SEQRES 18 A 428 ILE LEU GLY LYS GLY THR ARG LEU VAL TYR ILE THR THR SEQRES 19 A 428 ASN LYS GLY ILE PHE GLN THR TRP GLN LEU SER ALA THR SEQRES 20 A 428 ASN SER HIS PRO THR LYS LEU ILE ASP VAL ASN ILE TYR SEQRES 21 A 428 GLU ALA ILE LEU GLU SER LEU GLN ASP LEU TYR PRO PHE SEQRES 22 A 428 ALA HIS GLY THR LEU LYS ILE TRP ASP SER HIS PRO LEU SEQRES 23 A 428 GLN ASP GLU SER SER GLN LEU PHE LEU SER SER ILE TYR SEQRES 24 A 428 ASP SER SER CYS ASN GLU THR TYR TYR ILE LEU SER THR SEQRES 25 A 428 ILE ILE PHE ASP SER SER SER ASN SER PHE THR ILE PHE SEQRES 26 A 428 SER THR TYR ARG LEU ASN THR PHE MET GLU SER ILE THR SEQRES 27 A 428 ASP THR LYS PHE LYS PRO LYS ILE PHE ILE PRO GLN MET SEQRES 28 A 428 GLU ASN ALA ASN ASP THR ASN GLU VAL THR SER ILE LEU SEQRES 29 A 428 VAL MET PHE PRO ASN ALA VAL VAL ILE THR GLN VAL ASN SEQRES 30 A 428 SER LYS LEU ASP SER SER TYR SER MET ARG ARG LYS TRP SEQRES 31 A 428 GLU ASP ILE VAL SER LEU ARG ASN ASP ILE ASP ILE ILE SEQRES 32 A 428 GLY SER GLY TYR ASP SER LYS SER LEU TYR VAL LEU THR SEQRES 33 A 428 LYS GLN MET GLY VAL LEU GLN PHE PHE VAL LYS GLU SEQRES 1 K 122 GLN LEU GLN LEU VAL GLU SER GLY GLY GLY SER VAL GLN SEQRES 2 K 122 ALA GLY GLY SER LEU THR LEU SER CYS THR ALA SER GLU SEQRES 3 K 122 SER ILE SER LYS ARG ILE HIS GLY ILE GLY TRP PHE ARG SEQRES 4 K 122 GLN ARG ARG GLY GLU GLN ARG GLU GLU ILE ALA TYR ILE SEQRES 5 K 122 THR THR GLY GLY ARG PRO ASN LEU GLY ASP SER VAL LYS SEQRES 6 K 122 ASP ARG PHE THR ILE SER ARG ASP LYS SER ASN GLY THR SEQRES 7 K 122 VAL TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 K 122 ALA VAL TYR TYR CYS HIS GLY ARG GLY ARG TRP TRP GLY SEQRES 9 K 122 THR GLU GLY ARG LEU ASP TYR TRP GLY GLN GLY THR GLN SEQRES 10 K 122 VAL THR VAL SER SER FORMUL 3 HOH *235(H2 O) HELIX 1 AA1 PRO A 155 ASP A 159 5 5 HELIX 2 AA2 ASP A 177 ASN A 182 5 6 HELIX 3 AA3 ASN A 185 GLU A 190 1 6 HELIX 4 AA4 LYS A 191 SER A 193 5 3 HELIX 5 AA5 ILE A 312 GLN A 321 1 10 HELIX 6 AA6 TYR A 324 HIS A 328 5 5 HELIX 7 AA7 SER K 25 ARG K 31 1 7 HELIX 8 AA8 LYS K 87 THR K 91 5 5 SHEET 1 AA1 5 VAL A 60 GLU A 63 0 SHEET 2 AA1 5 TYR A 67 LEU A 72 -1 O VAL A 69 N THR A 62 SHEET 3 AA1 5 GLY A 473 VAL A 479 -1 O GLN A 476 N LYS A 70 SHEET 4 AA1 5 SER A 464 THR A 469 -1 N LEU A 465 O PHE A 477 SHEET 5 AA1 5 ILE A 455 TYR A 460 -1 N ILE A 456 O LEU A 468 SHEET 1 AA2 4 ASN A 87 ASP A 91 0 SHEET 2 AA2 4 TYR A 96 ASN A 100 -1 O ASN A 100 N ASN A 87 SHEET 3 AA2 4 LYS A 104 ASN A 109 -1 O TYR A 106 N VAL A 99 SHEET 4 AA2 4 ILE A 120 PRO A 123 -1 O ILE A 120 N ILE A 107 SHEET 1 AA3 4 ARG A 137 THR A 141 0 SHEET 2 AA3 4 GLY A 163 LYS A 168 -1 O ILE A 167 N ARG A 137 SHEET 3 AA3 4 LYS A 171 TYR A 175 -1 O TYR A 175 N LEU A 164 SHEET 4 AA3 4 HIS A 194 GLU A 197 -1 O LEU A 196 N ALA A 172 SHEET 1 AA4 4 CYS A 208 CYS A 214 0 SHEET 2 AA4 4 GLY A 218 THR A 223 -1 O SER A 222 N ASP A 209 SHEET 3 AA4 4 ILE A 228 ARG A 234 -1 O ILE A 231 N ILE A 219 SHEET 4 AA4 4 PRO A 240 LEU A 247 -1 O LYS A 246 N PHE A 230 SHEET 1 AA5 4 VAL A 267 GLY A 277 0 SHEET 2 AA5 4 THR A 280 THR A 287 -1 O LEU A 282 N GLY A 273 SHEET 3 AA5 4 ILE A 291 SER A 298 -1 O TRP A 295 N VAL A 283 SHEET 4 AA5 4 THR A 305 ASN A 311 -1 O THR A 305 N GLN A 296 SHEET 1 AA6 6 LYS A 332 PRO A 338 0 SHEET 2 AA6 6 SER A 344 ASP A 353 -1 O LEU A 348 N ASP A 335 SHEET 3 AA6 6 GLU A 358 ASP A 369 -1 O ILE A 362 N SER A 349 SHEET 4 AA6 6 SER A 374 ARG A 382 -1 O SER A 374 N ASP A 369 SHEET 5 AA6 6 TRP K 102 GLY K 104 -1 O TRP K 103 N PHE A 375 SHEET 6 AA6 6 GLY K 107 ARG K 108 -1 O GLY K 107 N GLY K 104 SHEET 1 AA7 4 LYS A 398 PHE A 400 0 SHEET 2 AA7 4 VAL A 413 PHE A 420 -1 O MET A 419 N LYS A 398 SHEET 3 AA7 4 ALA A 423 ASN A 430 -1 O THR A 427 N ILE A 416 SHEET 4 AA7 4 LYS A 442 SER A 448 -1 O ASP A 445 N ILE A 426 SHEET 1 AA8 4 LEU K 4 SER K 7 0 SHEET 2 AA8 4 LEU K 18 ALA K 24 -1 O THR K 23 N VAL K 5 SHEET 3 AA8 4 VAL K 79 MET K 83 -1 O MET K 83 N LEU K 18 SHEET 4 AA8 4 PHE K 68 ARG K 72 -1 N THR K 69 O GLN K 82 SHEET 1 AA9 6 GLY K 10 GLN K 13 0 SHEET 2 AA9 6 THR K 116 SER K 121 1 O THR K 119 N VAL K 12 SHEET 3 AA9 6 ALA K 92 GLY K 100 -1 N TYR K 94 O THR K 116 SHEET 4 AA9 6 ILE K 32 GLN K 40 -1 N PHE K 38 O TYR K 95 SHEET 5 AA9 6 GLU K 47 THR K 53 -1 O GLU K 47 N ARG K 39 SHEET 6 AA9 6 PRO K 58 LEU K 60 -1 O ASN K 59 N TYR K 51 SHEET 1 AB1 4 GLY K 10 GLN K 13 0 SHEET 2 AB1 4 THR K 116 SER K 121 1 O THR K 119 N VAL K 12 SHEET 3 AB1 4 ALA K 92 GLY K 100 -1 N TYR K 94 O THR K 116 SHEET 4 AB1 4 TYR K 111 TRP K 112 -1 O TYR K 111 N GLY K 98 CISPEP 1 GLU A 215 PRO A 216 0 7.00 CRYST1 93.381 154.693 41.423 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010709 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006464 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024141 0.00000