HEADER SIGNALING PROTEIN 20-MAY-20 6X25 TITLE CRYSTAL STRUCTURE OF INOSITOL POLYPHOSPHATE 1-PHOSPHATASE INPP1 IN TITLE 2 COMPLEX GADOLINIUM AFTER ADDITION OF INOSITOL 1,3,4-TRISPHOSPHATE AND TITLE 3 LITHIUM AT 3.2 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSITOL POLYPHOSPHATE 1-PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IPPASE; COMPND 5 EC: 3.1.3.57; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: INPP1; SOURCE 6 EXPRESSION_SYSTEM: BACULOVIRIDAE SP.; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 2681587 KEYWDS INOSITOL PHOSPHATE, NEUROLOGICAL DISEASE, BIPOLAR DISORDER, MANIC KEYWDS 2 DEPRESSIVE ILLNESS, PHOSPHATASE, SIGNALING PROTEIN, LITHIUM BINDING KEYWDS 3 SITE EXPDTA X-RAY DIFFRACTION AUTHOR D.E.DOLLINS,S.ENDO-STREETER,Y.REN,J.D.YORK REVDAT 3 18-OCT-23 6X25 1 REMARK REVDAT 2 14-JUL-21 6X25 1 JRNL REVDAT 1 25-NOV-20 6X25 0 JRNL AUTH D.E.DOLLINS,J.P.XIONG,S.ENDO-STREETER,D.E.ANDERSON, JRNL AUTH 2 V.S.BANSAL,J.W.PONDER,Y.REN,J.D.YORK JRNL TITL A STRUCTURAL BASIS FOR LITHIUM AND SUBSTRATE BINDING OF AN JRNL TITL 2 INOSITIDE PHOSPHATASE. JRNL REF J.BIOL.CHEM. V. 296 00059 2020 JRNL REFN ESSN 1083-351X JRNL PMID 33172890 JRNL DOI 10.1074/JBC.RA120.014057 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 5527 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.800 REMARK 3 FREE R VALUE TEST SET COUNT : 340 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 291 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 15 REMARK 3 BIN FREE R VALUE : 0.4400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2536 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.76000 REMARK 3 B22 (A**2) : 0.76000 REMARK 3 B33 (A**2) : -1.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.557 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.428 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 53.751 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.880 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.870 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2592 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2467 ; 0.004 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3509 ; 1.040 ; 1.628 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5729 ; 0.990 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 322 ; 6.124 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 123 ;32.071 ;23.902 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 459 ;12.952 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ; 9.438 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 343 ; 0.026 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2841 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 500 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1300 ; 0.547 ; 3.719 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1299 ; 0.547 ; 3.717 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1615 ; 1.041 ; 5.834 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1616 ; 1.041 ; 5.837 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1292 ; 0.221 ; 3.819 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1285 ; 0.198 ; 3.783 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1882 ; 0.471 ; 5.922 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2638 ; 3.661 ;24.933 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2636 ; 3.388 ;24.922 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 389 REMARK 3 ORIGIN FOR THE GROUP (A): -13.8069 9.8218 34.8989 REMARK 3 T TENSOR REMARK 3 T11: 0.0663 T22: 0.0532 REMARK 3 T33: 0.0810 T12: 0.0023 REMARK 3 T13: -0.0430 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 1.2780 L22: 0.8846 REMARK 3 L33: 2.5791 L12: -0.7950 REMARK 3 L13: 0.3131 L23: 0.0402 REMARK 3 S TENSOR REMARK 3 S11: 0.0984 S12: 0.1247 S13: -0.1512 REMARK 3 S21: 0.0690 S22: -0.0726 S23: 0.0036 REMARK 3 S31: -0.1068 S32: 0.0871 S33: -0.0258 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6X25 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1000248912. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-AUG-94 REMARK 200 TEMPERATURE (KELVIN) : 296 REMARK 200 PH : 5.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : UCSD MARK II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : UCSD-SYSTEM REMARK 200 DATA SCALING SOFTWARE : UCSD-SYSTEM REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11374 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 10.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.0 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10300 REMARK 200 FOR THE DATA SET : 3.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.45 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.19300 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: SQUASH REMARK 200 STARTING MODEL: 1INP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TETRAGONAL SHAPED CRYSTALS AMENABLE TO REMARK 280 DIFFRACTION STUDIES WERE GROWN BY THE HANGING DROP VAPOR REMARK 280 DIFFUSION METHOD ON SILANIZED GLASS COVERS SLIPS AT 20 C AND REMARK 280 GREW WITH DIMENSIONS ROUTINELY EXCEEDING 0.1 X 0.1 X 0.5MM. GD3+, REMARK 280 A COMPETITIVE INHIBITOR OF MG2+, HAS A USEFUL ANOMALOUS REMARK 280 ABSORPTION EDGE AT THE CUK WAVELENGTH AND THEREFORE WAS USED IN REMARK 280 THE CO-CRYSTALLIZATION OR SOAKING CONDITIONS. -MG2+/+LI+/+INS(1, REMARK 280 3,4)P3/+GD3+ (DATA=IP7R): RESERVOIR SOLUTION CONSISTED OF 10% REMARK 280 PEG 8000, 80MM BIS-TRIS, PH 5.25, 2MM GD2(SO4)3, 1MM INS(1,3,4) REMARK 280 P3; 200MM LI2SO4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.66500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.83250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 107.49750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 32 REMARK 465 ILE A 33 REMARK 465 GLU A 34 REMARK 465 GLU A 35 REMARK 465 LYS A 36 REMARK 465 LYS A 37 REMARK 465 GLU A 38 REMARK 465 GLY A 39 REMARK 465 GLU A 40 REMARK 465 LYS A 41 REMARK 465 ASN A 42 REMARK 465 LYS A 43 REMARK 465 LYS A 44 REMARK 465 PHE A 45 REMARK 465 SER A 238 REMARK 465 THR A 239 REMARK 465 ARG A 240 REMARK 465 SER A 241 REMARK 465 ASN A 242 REMARK 465 SER A 243 REMARK 465 GLU A 244 REMARK 465 ALA A 245 REMARK 465 GLN A 246 REMARK 465 SER A 247 REMARK 465 GLN A 248 REMARK 465 GLY A 249 REMARK 465 THR A 250 REMARK 465 GLN A 251 REMARK 465 ASN A 252 REMARK 465 PRO A 253 REMARK 465 SER A 254 REMARK 465 SER A 255 REMARK 465 GLU A 256 REMARK 465 GLY A 257 REMARK 465 SER A 258 REMARK 465 CYS A 259 REMARK 465 ARG A 260 REMARK 465 PHE A 261 REMARK 465 SER A 262 REMARK 465 GLY A 275 REMARK 465 ALA A 276 REMARK 465 LEU A 277 REMARK 465 SER A 278 REMARK 465 HIS A 279 REMARK 465 VAL A 280 REMARK 465 CYS A 281 REMARK 465 GLY A 282 REMARK 465 GLU A 283 REMARK 465 ARG A 341 REMARK 465 ASN A 342 REMARK 465 PRO A 343 REMARK 465 ASP A 344 REMARK 465 THR A 345 REMARK 465 GLY A 346 REMARK 465 LEU A 347 REMARK 465 ASP A 348 REMARK 465 GLU A 359 REMARK 465 GLY A 360 REMARK 465 ALA A 361 REMARK 465 ALA A 362 REMARK 465 GLY A 363 REMARK 465 VAL A 364 REMARK 465 ASP A 365 REMARK 465 LEU A 390 REMARK 465 GLN A 391 REMARK 465 HIS A 392 REMARK 465 LEU A 393 REMARK 465 ALA A 394 REMARK 465 PRO A 395 REMARK 465 VAL A 396 REMARK 465 ALA A 397 REMARK 465 THR A 398 REMARK 465 HIS A 399 REMARK 465 THR A 400 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CB CG SD CE REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 207 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 82 31.62 -98.39 REMARK 500 ASN A 114 99.06 -69.14 REMARK 500 THR A 272 46.90 -155.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 GD A 501 GD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 79 OE2 REMARK 620 2 ASP A 153 OD1 96.7 REMARK 620 3 ILE A 155 O 164.9 97.7 REMARK 620 4 SO4 A 504 O2 83.6 94.9 90.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 GD A 502 GD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 153 OD2 REMARK 620 2 ASP A 156 OD1 77.6 REMARK 620 3 ASP A 317 OD1 77.3 70.3 REMARK 620 4 SO4 A 504 O1 146.3 104.2 135.6 REMARK 620 5 SO4 A 504 O2 98.3 95.4 165.5 48.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GD A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504 DBREF 6X25 A 1 400 UNP P21327 INPP_BOVIN 1 400 SEQADV 6X25 LEU A 84 UNP P21327 PHE 84 CONFLICT SEQRES 1 A 400 MET SER ASP ILE LEU GLN GLU LEU LEU ARG VAL SER GLU SEQRES 2 A 400 LYS ALA ALA ASN ILE ALA ARG ALA CYS ARG GLN GLN GLU SEQRES 3 A 400 THR LEU PHE GLN LEU LEU ILE GLU GLU LYS LYS GLU GLY SEQRES 4 A 400 GLU LYS ASN LYS LYS PHE ALA VAL ASP PHE LYS THR LEU SEQRES 5 A 400 ALA ASP VAL LEU VAL GLN GLU VAL ILE LYS GLU ASN MET SEQRES 6 A 400 GLU ASN LYS PHE PRO GLY LEU GLY LYS LYS ILE PHE GLY SEQRES 7 A 400 GLU GLU SER ASN GLU LEU THR ASN ASP LEU GLY GLU LYS SEQRES 8 A 400 ILE ILE MET ARG LEU GLY PRO THR GLU GLU GLU THR VAL SEQRES 9 A 400 ALA LEU LEU SER LYS VAL LEU ASN GLY ASN LYS LEU ALA SEQRES 10 A 400 SER GLU ALA LEU ALA LYS VAL VAL HIS GLN ASP VAL PHE SEQRES 11 A 400 PHE SER ASP PRO ALA LEU ASP SER VAL GLU ILE ASN ILE SEQRES 12 A 400 PRO GLN ASP ILE LEU GLY ILE TRP VAL ASP PRO ILE ASP SEQRES 13 A 400 SER THR TYR GLN TYR ILE LYS GLY SER ALA ASP ILE THR SEQRES 14 A 400 PRO ASN GLN GLY ILE PHE PRO SER GLY LEU GLN CYS VAL SEQRES 15 A 400 THR VAL LEU ILE GLY VAL TYR ASP ILE GLN THR GLY VAL SEQRES 16 A 400 PRO LEU MET GLY VAL ILE ASN GLN PRO PHE VAL SER GLN SEQRES 17 A 400 ASP LEU HIS THR ARG ARG TRP LYS GLY GLN CYS TYR TRP SEQRES 18 A 400 GLY LEU SER TYR LEU GLY THR ASN ILE HIS SER LEU LEU SEQRES 19 A 400 PRO PRO VAL SER THR ARG SER ASN SER GLU ALA GLN SER SEQRES 20 A 400 GLN GLY THR GLN ASN PRO SER SER GLU GLY SER CYS ARG SEQRES 21 A 400 PHE SER VAL VAL ILE SER THR SER GLU LYS GLU THR ILE SEQRES 22 A 400 LYS GLY ALA LEU SER HIS VAL CYS GLY GLU ARG ILE PHE SEQRES 23 A 400 ARG ALA ALA GLY ALA GLY TYR LYS SER LEU CYS VAL ILE SEQRES 24 A 400 LEU GLY LEU ALA ASP ILE TYR ILE PHE SER GLU ASP THR SEQRES 25 A 400 THR PHE LYS TRP ASP SER CYS ALA ALA HIS ALA ILE LEU SEQRES 26 A 400 ARG ALA MET GLY GLY GLY MET VAL ASP LEU LYS GLU CYS SEQRES 27 A 400 LEU GLU ARG ASN PRO ASP THR GLY LEU ASP LEU PRO GLN SEQRES 28 A 400 LEU VAL TYR HIS VAL GLY ASN GLU GLY ALA ALA GLY VAL SEQRES 29 A 400 ASP GLN TRP ALA ASN LYS GLY GLY LEU ILE ALA TYR ARG SEQRES 30 A 400 SER GLU LYS GLN LEU GLU THR PHE LEU SER ARG LEU LEU SEQRES 31 A 400 GLN HIS LEU ALA PRO VAL ALA THR HIS THR HET GD A 501 1 HET GD A 502 1 HET SO4 A 503 5 HET SO4 A 504 5 HETNAM GD GADOLINIUM ATOM HETNAM SO4 SULFATE ION FORMUL 2 GD 2(GD) FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 HOH *16(H2 O) HELIX 1 AA1 MET A 1 GLN A 25 1 25 HELIX 2 AA2 GLN A 25 LEU A 31 1 7 HELIX 3 AA3 ASP A 48 PHE A 69 1 22 HELIX 4 AA4 LEU A 72 LYS A 74 5 3 HELIX 5 AA5 THR A 99 LEU A 111 1 13 HELIX 6 AA6 ASN A 114 GLN A 127 1 14 HELIX 7 AA7 ASP A 133 SER A 138 1 6 HELIX 8 AA8 PRO A 144 ASP A 146 5 3 HELIX 9 AA9 SER A 157 GLY A 164 1 8 HELIX 10 AB1 GLY A 178 VAL A 182 5 5 HELIX 11 AB2 GLY A 290 LEU A 300 1 11 HELIX 12 AB3 PHE A 314 ALA A 327 1 14 HELIX 13 AB4 ASP A 334 GLU A 340 1 7 HELIX 14 AB5 SER A 378 LEU A 389 1 12 SHEET 1 AA1 6 ILE A 76 GLY A 78 0 SHEET 2 AA1 6 LEU A 148 ASP A 156 1 O ILE A 150 N PHE A 77 SHEET 3 AA1 6 THR A 183 ASP A 190 -1 O LEU A 185 N ASP A 153 SHEET 4 AA1 6 PRO A 196 GLN A 208 -1 O MET A 198 N VAL A 188 SHEET 5 AA1 6 TRP A 215 TYR A 225 -1 O SER A 224 N LEU A 197 SHEET 6 AA1 6 THR A 228 HIS A 231 -1 O ILE A 230 N LEU A 223 SHEET 1 AA2 2 GLU A 83 THR A 85 0 SHEET 2 AA2 2 LYS A 91 ILE A 93 -1 O ILE A 92 N LEU A 84 SHEET 1 AA3 5 ILE A 285 ARG A 287 0 SHEET 2 AA3 5 ILE A 265 THR A 267 1 N THR A 267 O PHE A 286 SHEET 3 AA3 5 ILE A 305 PHE A 308 1 O ILE A 305 N SER A 266 SHEET 4 AA3 5 LEU A 373 TYR A 376 -1 O ALA A 375 N TYR A 306 SHEET 5 AA3 5 GLY A 331 VAL A 333 -1 N GLY A 331 O TYR A 376 LINK OE2 GLU A 79 GD GD A 501 1555 1555 2.33 LINK OD1 ASP A 153 GD GD A 501 1555 1555 2.66 LINK OD2 ASP A 153 GD GD A 502 1555 1555 2.66 LINK O ILE A 155 GD GD A 501 1555 1555 2.56 LINK OD1 ASP A 156 GD GD A 502 1555 1555 3.05 LINK OD1 ASP A 317 GD GD A 502 1555 1555 2.48 LINK GD GD A 501 O2 SO4 A 504 1555 1555 2.68 LINK GD GD A 502 O1 SO4 A 504 1555 1555 3.06 LINK GD GD A 502 O2 SO4 A 504 1555 1555 2.61 CISPEP 1 GLY A 97 PRO A 98 0 -0.15 SITE 1 AC1 5 ASP A 54 GLU A 79 ASP A 153 ILE A 155 SITE 2 AC1 5 SO4 A 504 SITE 1 AC2 5 GLU A 79 ASP A 153 ASP A 156 ASP A 317 SITE 2 AC2 5 SO4 A 504 SITE 1 AC3 8 SER A 268 GLU A 269 ALA A 288 ALA A 289 SITE 2 AC3 8 GLY A 290 LYS A 294 HOH A 604 HOH A 606 SITE 1 AC4 5 GLU A 79 SER A 157 THR A 158 GD A 501 SITE 2 AC4 5 GD A 502 CRYST1 51.640 51.640 143.330 90.00 90.00 90.00 P 41 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019365 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019365 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006977 0.00000