HEADER IMMUNE SYSTEM 22-MAY-20 6X4G TITLE CRYSTAL STRUCTURE OF ICOS IN COMPLEX WITH ICOS-L AND AN ANTI ICOS-L TITLE 2 VNAR DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: INDUCIBLE T-CELL COSTIMULATOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACTIVATION-INDUCIBLE LYMPHOCYTE IMMUNOMEDIATORY MOLECULE; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ICOS LIGAND; COMPND 8 CHAIN: C; COMPND 9 SYNONYM: B7 HOMOLOG 2,B7-H2,B7-LIKE PROTEIN GL50,B7-RELATED PROTEIN COMPND 10 1,B7RP-1; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: ANTI ICOS-L VHH DOMAIN VNAR; COMPND 14 CHAIN: N; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ICOS, AILIM; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: ICOSLG, B7H2, B7RP1, ICOSL, KIAA0653; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: ORECTOLOBUS MACULATUS; SOURCE 17 ORGANISM_TAXID: 168098; SOURCE 18 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS IMMUNE CHECKPOINT, RECEPTORS, GLYCOPROTEINS, IMMUNE SYSTEM, T-CELL, KEYWDS 2 B-CELL EXPDTA X-RAY DIFFRACTION AUTHOR E.RUJAS,T.SICARD,J.P.JULIEN REVDAT 3 18-OCT-23 6X4G 1 REMARK REVDAT 2 21-OCT-20 6X4G 1 JRNL REVDAT 1 14-OCT-20 6X4G 0 JRNL AUTH E.RUJAS,H.CUI,T.SICARD,A.SEMESI,J.P.JULIEN JRNL TITL STRUCTURAL CHARACTERIZATION OF THE ICOS/ICOS-L IMMUNE JRNL TITL 2 COMPLEX REVEALS HIGH MOLECULAR MIMICRY BY THERAPEUTIC JRNL TITL 3 ANTIBODIES. JRNL REF NAT COMMUN V. 11 5066 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 33033255 JRNL DOI 10.1038/S41467-020-18828-4 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 8676 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 434 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7300 - 5.0500 1.00 2947 156 0.2183 0.2292 REMARK 3 2 5.0500 - 4.0100 1.00 2810 148 0.2050 0.2645 REMARK 3 3 4.0100 - 3.5000 0.90 2485 130 0.2752 0.3709 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.576 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.974 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 85.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3575 REMARK 3 ANGLE : 1.131 4848 REMARK 3 CHIRALITY : 0.085 602 REMARK 3 PLANARITY : 0.009 600 REMARK 3 DIHEDRAL : 26.004 582 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6X4G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1000249554. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10227 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : 0.27000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 12.20 REMARK 200 R MERGE FOR SHELL (I) : 0.79000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1I8L, 4I0K, 1T6V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.0, AND 30% (V/V) REMARK 280 JEFFAMINE ED-2001, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.55400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.00750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.00750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.77700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.00750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.00750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 92.33100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.00750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.00750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.77700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.00750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.00750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 92.33100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.55400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, N, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 19 REMARK 465 GLY A 20 REMARK 465 GLU A 21 REMARK 465 ILE A 22 REMARK 465 ASN A 23 REMARK 465 GLY A 24 REMARK 465 SER A 25 REMARK 465 ALA A 26 REMARK 465 ASN A 27 REMARK 465 TYR A 28 REMARK 465 GLU A 29 REMARK 465 HIS A 129 REMARK 465 GLY A 130 REMARK 465 THR A 131 REMARK 465 GLU A 132 REMARK 465 ASN A 133 REMARK 465 LEU A 134 REMARK 465 TYR A 135 REMARK 465 PHE A 136 REMARK 465 GLN A 137 REMARK 465 THR C 17 REMARK 465 GLY C 18 REMARK 465 SER C 150 REMARK 465 GLN C 151 REMARK 465 ASP C 152 REMARK 465 GLN C 231 REMARK 465 THR C 232 REMARK 465 GLY C 233 REMARK 465 ASN C 234 REMARK 465 ASP C 235 REMARK 465 ILE C 236 REMARK 465 GLY C 237 REMARK 465 GLU C 238 REMARK 465 ARG C 239 REMARK 465 ASP C 240 REMARK 465 LYS C 241 REMARK 465 ILE C 242 REMARK 465 THR C 243 REMARK 465 GLU C 244 REMARK 465 ASN C 245 REMARK 465 PRO C 246 REMARK 465 VAL C 247 REMARK 465 SER C 248 REMARK 465 GLY C 249 REMARK 465 THR C 250 REMARK 465 GLU C 251 REMARK 465 ASN C 252 REMARK 465 LEU C 253 REMARK 465 TYR C 254 REMARK 465 PHE C 255 REMARK 465 GLN C 256 REMARK 465 THR N 0 REMARK 465 GLY N 119 REMARK 465 GLY N 120 REMARK 465 SER N 121 REMARK 465 TRP N 122 REMARK 465 SER N 123 REMARK 465 HIS N 124 REMARK 465 PRO N 125 REMARK 465 GLN N 126 REMARK 465 PHE N 127 REMARK 465 GLU N 128 REMARK 465 LYS N 129 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP C 19 CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG N 55 OD2 ASP N 78 2.03 REMARK 500 OH TYR C 197 OD2 ASP N 106 2.07 REMARK 500 OD2 ASP A 46 O6 NAG A 201 2.18 REMARK 500 OD1 ASN C 162 ND2 ASN C 192 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU C 22 ND2 ASN C 102 4544 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS C 37 CA - CB - SG ANGL. DEV. = 8.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU C 73 98.71 -68.45 REMARK 500 LEU C 120 30.12 -99.36 REMARK 500 ASN C 162 60.58 70.91 REMARK 500 PRO C 165 -136.18 -82.86 REMARK 500 VAL C 211 73.09 -108.01 REMARK 500 PRO N 28 34.86 -91.40 REMARK 500 THR N 89 22.94 42.48 REMARK 500 REMARK 500 REMARK: NULL DBREF 6X4G A 19 129 UNP Q9Y6W8 ICOS_HUMAN 19 129 DBREF 6X4G C 19 248 UNP O75144 ICOSL_HUMAN 19 248 DBREF 6X4G N 0 129 PDB 6X4G 6X4G 0 129 SEQADV 6X4G GLY A 130 UNP Q9Y6W8 EXPRESSION TAG SEQADV 6X4G THR A 131 UNP Q9Y6W8 EXPRESSION TAG SEQADV 6X4G GLU A 132 UNP Q9Y6W8 EXPRESSION TAG SEQADV 6X4G ASN A 133 UNP Q9Y6W8 EXPRESSION TAG SEQADV 6X4G LEU A 134 UNP Q9Y6W8 EXPRESSION TAG SEQADV 6X4G TYR A 135 UNP Q9Y6W8 EXPRESSION TAG SEQADV 6X4G PHE A 136 UNP Q9Y6W8 EXPRESSION TAG SEQADV 6X4G GLN A 137 UNP Q9Y6W8 EXPRESSION TAG SEQADV 6X4G THR C 17 UNP O75144 CLONING ARTIFACT SEQADV 6X4G GLY C 18 UNP O75144 CLONING ARTIFACT SEQADV 6X4G GLY C 249 UNP O75144 EXPRESSION TAG SEQADV 6X4G THR C 250 UNP O75144 EXPRESSION TAG SEQADV 6X4G GLU C 251 UNP O75144 EXPRESSION TAG SEQADV 6X4G ASN C 252 UNP O75144 EXPRESSION TAG SEQADV 6X4G LEU C 253 UNP O75144 EXPRESSION TAG SEQADV 6X4G TYR C 254 UNP O75144 EXPRESSION TAG SEQADV 6X4G PHE C 255 UNP O75144 EXPRESSION TAG SEQADV 6X4G GLN C 256 UNP O75144 EXPRESSION TAG SEQRES 1 A 119 THR GLY GLU ILE ASN GLY SER ALA ASN TYR GLU MET PHE SEQRES 2 A 119 ILE PHE HIS ASN GLY GLY VAL GLN ILE LEU CYS LYS TYR SEQRES 3 A 119 PRO ASP ILE VAL GLN GLN PHE LYS MET GLN LEU LEU LYS SEQRES 4 A 119 GLY GLY GLN ILE LEU CYS ASP LEU THR LYS THR LYS GLY SEQRES 5 A 119 SER GLY ASN THR VAL SER ILE LYS SER LEU LYS PHE CYS SEQRES 6 A 119 HIS SER GLN LEU SER ASN ASN SER VAL SER PHE PHE LEU SEQRES 7 A 119 TYR ASN LEU ASP HIS SER HIS ALA ASN TYR TYR PHE CYS SEQRES 8 A 119 ASN LEU SER ILE PHE ASP PRO PRO PRO PHE LYS VAL THR SEQRES 9 A 119 LEU THR GLY GLY TYR LEU HIS GLY THR GLU ASN LEU TYR SEQRES 10 A 119 PHE GLN SEQRES 1 C 240 THR GLY ASP THR GLN GLU LYS GLU VAL ARG ALA MET VAL SEQRES 2 C 240 GLY SER ASP VAL GLU LEU SER CYS ALA CYS PRO GLU GLY SEQRES 3 C 240 SER ARG PHE ASP LEU ASN ASP VAL TYR VAL TYR TRP GLN SEQRES 4 C 240 THR SER GLU SER LYS THR VAL VAL THR TYR HIS ILE PRO SEQRES 5 C 240 GLN ASN SER SER LEU GLU ASN VAL ASP SER ARG TYR ARG SEQRES 6 C 240 ASN ARG ALA LEU MET SER PRO ALA GLY MET LEU ARG GLY SEQRES 7 C 240 ASP PHE SER LEU ARG LEU PHE ASN VAL THR PRO GLN ASP SEQRES 8 C 240 GLU GLN LYS PHE HIS CYS LEU VAL LEU SER GLN SER LEU SEQRES 9 C 240 GLY PHE GLN GLU VAL LEU SER VAL GLU VAL THR LEU HIS SEQRES 10 C 240 VAL ALA ALA ASN PHE SER VAL PRO VAL VAL SER ALA PRO SEQRES 11 C 240 HIS SER PRO SER GLN ASP GLU LEU THR PHE THR CYS THR SEQRES 12 C 240 SER ILE ASN GLY TYR PRO ARG PRO ASN VAL TYR TRP ILE SEQRES 13 C 240 ASN LYS THR ASP ASN SER LEU LEU ASP GLN ALA LEU GLN SEQRES 14 C 240 ASN ASP THR VAL PHE LEU ASN MET ARG GLY LEU TYR ASP SEQRES 15 C 240 VAL VAL SER VAL LEU ARG ILE ALA ARG THR PRO SER VAL SEQRES 16 C 240 ASN ILE GLY CYS CYS ILE GLU ASN VAL LEU LEU GLN GLN SEQRES 17 C 240 ASN LEU THR VAL GLY SER GLN THR GLY ASN ASP ILE GLY SEQRES 18 C 240 GLU ARG ASP LYS ILE THR GLU ASN PRO VAL SER GLY THR SEQRES 19 C 240 GLU ASN LEU TYR PHE GLN SEQRES 1 N 130 THR GLY ALA ARG VAL ASP GLN THR PRO ARG SER VAL THR SEQRES 2 N 130 LYS GLU THR GLY GLU SER LEU THR ILE ASN CYS VAL LEU SEQRES 3 N 130 ARG ASP PRO SER TYR ALA LEU GLY SER THR CYS TRP TYR SEQRES 4 N 130 ARG LYS LYS SER GLY SER THR ASN GLU GLU SER ILE SER SEQRES 5 N 130 LYS GLY GLY ARG TYR VAL GLU THR VAL ASN SER GLY SER SEQRES 6 N 130 LYS SER PHE SER LEU ARG ILE ASN ASP LEU THR VAL GLU SEQRES 7 N 130 ASP GLY GLY THR TYR ARG CYS GLY ALA THR ASP THR VAL SEQRES 8 N 130 ARG ILE TYR SER CYS ASP TYR LEU CYS ALA LEU ASN GLY SEQRES 9 N 130 HIS ARG ASP ALA ALA CYS GLY GLY GLY THR VAL VAL THR SEQRES 10 N 130 VAL ASN GLY GLY SER TRP SER HIS PRO GLN PHE GLU LYS HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET MAN B 5 11 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET MAN D 5 11 HET NAG A 201 14 HET GOL A 202 6 HET NAG C 301 14 HET NAG C 302 14 HET NAG C 303 14 HET NAG C 304 14 HET NAG C 305 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 NAG 10(C8 H15 N O6) FORMUL 4 BMA 2(C6 H12 O6) FORMUL 4 MAN 4(C6 H12 O6) FORMUL 7 GOL C3 H8 O3 HELIX 1 AA1 SER C 87 ARG C 93 1 7 HELIX 2 AA2 THR C 104 GLU C 108 5 5 HELIX 3 AA3 ASP C 181 ALA C 183 5 3 HELIX 4 AA4 THR N 75 GLY N 79 5 5 HELIX 5 AA5 SER N 94 LEU N 98 5 5 SHEET 1 AA1 4 PHE A 31 HIS A 34 0 SHEET 2 AA1 4 GLY A 37 LYS A 43 -1 O GLN A 39 N ILE A 32 SHEET 3 AA1 4 SER A 91 LEU A 96 -1 O VAL A 92 N CYS A 42 SHEET 4 AA1 4 GLN A 86 SER A 88 -1 N GLN A 86 O SER A 93 SHEET 1 AA2 5 VAL A 75 LYS A 78 0 SHEET 2 AA2 5 GLN A 60 LYS A 69 -1 N THR A 68 O SER A 76 SHEET 3 AA2 5 GLN A 50 LYS A 57 -1 N LYS A 57 O GLN A 60 SHEET 4 AA2 5 TYR A 106 ASP A 115 -1 O PHE A 108 N LEU A 56 SHEET 5 AA2 5 LYS A 120 TYR A 127 -1 O LYS A 120 N ILE A 113 SHEET 1 AA3 5 LYS C 23 MET C 28 0 SHEET 2 AA3 5 GLN C 123 ALA C 135 1 O THR C 131 N VAL C 25 SHEET 3 AA3 5 LYS C 110 SER C 117 -1 N PHE C 111 O VAL C 130 SHEET 4 AA3 5 VAL C 50 THR C 56 -1 N GLN C 55 O HIS C 112 SHEET 5 AA3 5 VAL C 62 HIS C 66 -1 O THR C 64 N TRP C 54 SHEET 1 AA4 3 VAL C 33 LEU C 35 0 SHEET 2 AA4 3 LEU C 98 LEU C 100 -1 O LEU C 100 N VAL C 33 SHEET 3 AA4 3 ALA C 84 MET C 86 -1 N LEU C 85 O ARG C 99 SHEET 1 AA5 4 LEU C 154 GLY C 163 0 SHEET 2 AA5 4 TYR C 197 ILE C 205 -1 O SER C 201 N CYS C 158 SHEET 3 AA5 4 GLN C 185 LEU C 191 -1 N PHE C 190 O ASP C 198 SHEET 4 AA5 4 ARG N 91 ILE N 92 1 O ARG N 91 N LEU C 191 SHEET 1 AA6 3 ASN C 168 ILE C 172 0 SHEET 2 AA6 3 GLY C 214 ASN C 219 -1 O GLU C 218 N ASN C 168 SHEET 3 AA6 3 GLN C 224 GLY C 229 -1 O LEU C 226 N ILE C 217 SHEET 1 AA7 4 VAL N 4 THR N 7 0 SHEET 2 AA7 4 LEU N 19 LEU N 25 -1 O VAL N 24 N ASP N 5 SHEET 3 AA7 4 SER N 66 ILE N 71 -1 O LEU N 69 N ILE N 21 SHEET 4 AA7 4 TYR N 56 ASN N 61 -1 N ASN N 61 O SER N 66 SHEET 1 AA8 5 SER N 10 LYS N 13 0 SHEET 2 AA8 5 THR N 113 VAL N 117 1 O VAL N 114 N VAL N 11 SHEET 3 AA8 5 GLY N 80 THR N 87 -1 N GLY N 80 O VAL N 115 SHEET 4 AA8 5 CYS N 36 LYS N 40 -1 N TYR N 38 O ARG N 83 SHEET 5 AA8 5 GLU N 47 SER N 49 -1 O GLU N 48 N ARG N 39 SHEET 1 AA9 4 SER N 10 LYS N 13 0 SHEET 2 AA9 4 THR N 113 VAL N 117 1 O VAL N 114 N VAL N 11 SHEET 3 AA9 4 GLY N 80 THR N 87 -1 N GLY N 80 O VAL N 115 SHEET 4 AA9 4 ALA N 107 CYS N 109 -1 O ALA N 108 N ALA N 86 SSBOND 1 CYS A 42 CYS A 109 1555 1555 2.00 SSBOND 2 CYS A 63 CYS A 83 1555 1555 2.02 SSBOND 3 CYS C 37 CYS C 113 1555 1555 2.05 SSBOND 4 CYS C 158 CYS C 215 1555 1555 2.02 SSBOND 5 CYS N 23 CYS N 84 1555 1555 2.03 SSBOND 6 CYS N 36 CYS N 95 1555 1555 2.03 SSBOND 7 CYS N 99 CYS N 109 1555 1555 2.04 LINK ND2 ASN A 89 C1 NAG A 201 1555 1555 1.45 LINK ND2 ASN A 110 C1 NAG B 1 1555 1555 1.42 LINK ND2 ASN C 70 C1 NAG C 302 1555 1555 1.46 LINK ND2 ASN C 102 C1 NAG C 304 1555 1555 1.45 LINK ND2 ASN C 137 C1 NAG C 305 1555 1555 1.46 LINK ND2 ASN C 173 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN C 186 C1 NAG C 301 1555 1555 1.45 LINK ND2 ASN C 225 C1 NAG C 303 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.45 LINK O3 BMA B 3 C1 MAN B 4 1555 1555 1.45 LINK O6 BMA B 3 C1 MAN B 5 1555 1555 1.46 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.46 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.45 LINK O6 BMA D 3 C1 MAN D 5 1555 1555 1.45 CISPEP 1 ASP A 115 PRO A 116 0 6.09 CISPEP 2 PRO A 117 PRO A 118 0 7.15 CISPEP 3 TYR C 164 PRO C 165 0 -5.43 CISPEP 4 THR N 7 PRO N 8 0 -1.64 CISPEP 5 ASP N 27 PRO N 28 0 6.11 CRYST1 104.015 104.015 123.108 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009614 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009614 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008123 0.00000