HEADER BLOOD CLOTTING 26-MAY-20 6X5J TITLE DISCOVERY OF HYDROXY PYRIMIDINE FACTOR IXA INHIBITORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR IX; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CHRISTMAS FACTOR,PLASMA THROMBOPLASTIN COMPONENT,PTC; COMPND 5 EC: 3.4.21.22; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: COAGULATION FACTOR IX; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: CHRISTMAS FACTOR,PLASMA THROMBOPLASTIN COMPONENT,PTC; COMPND 11 EC: 3.4.21.22; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: F9; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: F9; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SERINE PROTEASE, ZYMOGEN, HYDROLASE, GLYCOPROTEIN, HYDROXYLATION, KEYWDS 2 PHOSPHOPROTEIN, SULFATION, HEMOSTASIS, HEMOPHILIA, XASE-LIKE KEYWDS 3 VARIANT, COMMUNICATION CHANNEL, GAMMA-CARBOXYGLUTAMIC ACID, EGF-LIKE KEYWDS 4 DOMAIN, DISEASE MUTATION, BLOOD CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR C.L.JAYNE,T.ANDREANI,T.CHAN,M.V.CHELLIAH,M.C.CLASBY,M.DWYER, AUTHOR 2 K.A.EAGEN,S.FRIED,W.J.GREENLEE,Z.GUO,B.HAWES,A.HRUZA,R.INGRAM, AUTHOR 3 K.M.KEERTIKAR,S.NEELAMKAVIL,P.REICHERT,Y.XIA,S.CHACKALAMANNIL REVDAT 1 24-JUN-20 6X5J 0 JRNL AUTH C.L.JAYNE,T.ANDREANI,T.Y.CHAN,M.V.CHELLIAH,M.C.CLASBY, JRNL AUTH 2 M.DWYER,K.A.EAGEN,S.FRIED,W.J.GREENLEE,Z.GUO,B.HAWES, JRNL AUTH 3 A.HRUZA,R.INGRAM,K.M.KEERTIKAR,S.NEELAMKAVIL,P.REICHERT, JRNL AUTH 4 Y.XIA,S.CHACKALAMANNIL JRNL TITL DISCOVERY OF HYDROXY PYRIMIDINE FACTOR IXA INHIBITORS. JRNL REF BIOORG.MED.CHEM.LETT. V. 30 27279 2020 JRNL REFN ESSN 1464-3405 JRNL PMID 32527459 JRNL DOI 10.1016/J.BMCL.2020.127279 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 17285 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 822 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.53 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.03 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2376 REMARK 3 BIN FREE R VALUE : 0.2821 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 15 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2214 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 89 REMARK 3 SOLVENT ATOMS : 131 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.86520 REMARK 3 B22 (A**2) : -4.86520 REMARK 3 B33 (A**2) : 9.73040 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.300 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.313 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.220 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4626 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8323 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1375 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 793 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2384 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 295 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3354 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.01 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.56 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.08 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 31.0626 11.2387 18.2264 REMARK 3 T TENSOR REMARK 3 T11: -0.1928 T22: -0.0873 REMARK 3 T33: -0.0913 T12: 0.008 REMARK 3 T13: 0.0232 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 1.94 L22: 2.384 REMARK 3 L33: 3.2791 L12: -0.1544 REMARK 3 L13: 1.1581 L23: -0.0951 REMARK 3 S TENSOR REMARK 3 S11: -0.0196 S12: 0.0635 S13: -0.0816 REMARK 3 S21: 0.0635 S22: -0.0257 S23: -0.194 REMARK 3 S31: -0.0816 S32: -0.194 S33: 0.0453 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 50.5358 16.4706 4.126 REMARK 3 T TENSOR REMARK 3 T11: 0.0229 T22: 0.3224 REMARK 3 T33: 0.1977 T12: -0.0982 REMARK 3 T13: 0.1084 T23: 0.1819 REMARK 3 L TENSOR REMARK 3 L11: 10.8368 L22: 6.6314 REMARK 3 L33: 2.9052 L12: -5.0107 REMARK 3 L13: -0.5452 L23: -0.2642 REMARK 3 S TENSOR REMARK 3 S11: 0.1895 S12: -0.5547 S13: -0.1712 REMARK 3 S21: -0.5547 S22: -0.0947 S23: 0.7724 REMARK 3 S31: -0.1712 S32: 0.7724 S33: -0.0948 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6X5J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1000249572. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 5.2 - 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17291 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.513 REMARK 200 RESOLUTION RANGE LOW (A) : 70.361 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : 0.05800 REMARK 200 FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : 0.62000 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: AUTOBUSTER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CITRIC ACID, 20% PEG 6000, PH REMARK 280 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.24750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.27400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.27400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.87125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.27400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.27400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.62375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.27400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.27400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 73.87125 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.27400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.27400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 24.62375 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 49.24750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 250 REMARK 465 MET B 84 REMARK 465 SER B 102 REMARK 465 ALA B 103 REMARK 465 ASP B 104 REMARK 465 ASN B 105 REMARK 465 LYS B 106 REMARK 465 THR B 140 REMARK 465 SER B 141 REMARK 465 LYS B 142 REMARK 465 LEU B 143 REMARK 465 THR B 144 REMARK 465 ARG B 145 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 139 HH11 ARG A 162 1.55 REMARK 500 HH TYR A 130 OD1 ASN B 92 1.58 REMARK 500 OG SER A 200 HN3 6NH A 303 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 71 -66.00 -131.05 REMARK 500 SER A 219 -74.04 -111.63 REMARK 500 GLU A 222 -120.17 -91.36 REMARK 500 GLN B 97 -84.52 -115.47 REMARK 500 LYS B 122 -52.55 -128.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 70 OE1 REMARK 620 2 ASN A 72 O 76.1 REMARK 620 3 GLU A 75 O 151.7 79.4 REMARK 620 4 GLU A 77 OE1 86.2 79.6 75.5 REMARK 620 5 GLU A 80 OE1 99.5 152.2 95.5 72.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6NH A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 308 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6X5L RELATED DB: PDB REMARK 900 DIFFERENT COMPOUND REMARK 900 RELATED ID: 6X5P RELATED DB: PDB REMARK 900 DIFFERENT COMPOUND DBREF 6X5J A 16 250 UNP P00740 FA9_HUMAN 227 461 DBREF 6X5J B 85 145 UNP P00740 FA9_HUMAN 131 191 SEQADV 6X5J MET B 84 UNP P00740 INITIATING METHIONINE SEQRES 1 A 235 VAL VAL GLY GLY GLU ASP ALA LYS PRO GLY GLN PHE PRO SEQRES 2 A 235 TRP GLN VAL VAL LEU ASN GLY LYS VAL ASP ALA PHE CYS SEQRES 3 A 235 GLY GLY SER ILE VAL ASN GLU LYS TRP ILE VAL THR ALA SEQRES 4 A 235 ALA HIS CYS VAL GLU THR GLY VAL LYS ILE THR VAL VAL SEQRES 5 A 235 ALA GLY GLU HIS ASN ILE GLU GLU THR GLU HIS THR GLU SEQRES 6 A 235 GLN LYS ARG ASN VAL ILE ARG ILE ILE PRO HIS HIS ASN SEQRES 7 A 235 TYR ASN ALA ALA ILE ASN LYS TYR ASN HIS ASP ILE ALA SEQRES 8 A 235 LEU LEU GLU LEU ASP GLU PRO LEU VAL LEU ASN SER TYR SEQRES 9 A 235 VAL THR PRO ILE CYS ILE ALA ASP LYS GLU TYR THR ASN SEQRES 10 A 235 ILE PHE LEU LYS PHE GLY SER GLY TYR VAL SER GLY TRP SEQRES 11 A 235 GLY ARG VAL PHE HIS LYS GLY ARG SER ALA LEU VAL LEU SEQRES 12 A 235 GLN TYR LEU ARG VAL PRO LEU VAL ASP ARG ALA THR CYS SEQRES 13 A 235 LEU ARG SER THR LYS PHE THR ILE TYR ASN ASN MET PHE SEQRES 14 A 235 CYS ALA GLY PHE HIS GLU GLY GLY ARG ASP SER CYS GLN SEQRES 15 A 235 GLY ASP SER GLY GLY PRO HIS VAL THR GLU VAL GLU GLY SEQRES 16 A 235 THR SER PHE LEU THR GLY ILE ILE SER TRP GLY GLU GLU SEQRES 17 A 235 CYS ALA MET LYS GLY LYS TYR GLY ILE TYR THR LYS VAL SEQRES 18 A 235 SER ARG TYR VAL ASN TRP ILE LYS GLU LYS THR LYS LEU SEQRES 19 A 235 THR SEQRES 1 B 62 MET ASP VAL THR CYS ASN ILE LYS ASN GLY ARG CYS GLU SEQRES 2 B 62 GLN PHE CYS LYS ASN SER ALA ASP ASN LYS VAL VAL CYS SEQRES 3 B 62 SER CYS THR GLU GLY TYR ARG LEU ALA GLU ASN GLN LYS SEQRES 4 B 62 SER CYS GLU PRO ALA VAL PRO PHE PRO CYS GLY ARG VAL SEQRES 5 B 62 SER VAL SER GLN THR SER LYS LEU THR ARG HET GOL A 301 14 HET GOL A 302 14 HET 6NH A 303 39 HET NA A 304 1 HET CIT A 305 18 HET CIT A 306 18 HET CIT A 307 18 HET CIT A 308 18 HETNAM GOL GLYCEROL HETNAM 6NH 2-(4-HYDROXY-5-PHENYL-1H-PYRAZOL-3-YL)-1H- HETNAM 2 6NH BENZOIMIDAZOLE-5-CARBOXAMIDINE HETNAM NA SODIUM ION HETNAM CIT CITRIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 6NH C17 H14 N6 O FORMUL 6 NA NA 1+ FORMUL 7 CIT 4(C6 H8 O7) FORMUL 11 HOH *131(H2 O) HELIX 1 AA1 ALA A 54 VAL A 58 5 5 HELIX 2 AA2 ASP A 127 LYS A 136 1 10 HELIX 3 AA3 ASP A 167 SER A 174 1 8 HELIX 4 AA4 TYR A 239 LYS A 248 1 10 HELIX 5 AA5 ILE B 90 CYS B 95 5 6 SHEET 1 AA1 8 GLU A 20 ASP A 21 0 SHEET 2 AA1 8 GLN A 159 VAL A 166 -1 O TYR A 160 N GLU A 20 SHEET 3 AA1 8 MET A 183 ALA A 186 -1 O CYS A 185 N VAL A 166 SHEET 4 AA1 8 GLY A 231 LYS A 235 -1 O TYR A 233 N PHE A 184 SHEET 5 AA1 8 THR A 211 TRP A 220 -1 N TRP A 220 O ILE A 232 SHEET 6 AA1 8 PRO A 203 VAL A 208 -1 N VAL A 208 O THR A 211 SHEET 7 AA1 8 SER A 139 GLY A 144 -1 N TYR A 141 O VAL A 205 SHEET 8 AA1 8 GLN A 159 VAL A 166 -1 O VAL A 163 N GLY A 140 SHEET 1 AA2 7 GLN A 30 ASN A 34 0 SHEET 2 AA2 7 CYS A 41 ASN A 47 -1 O CYS A 41 N LEU A 33 SHEET 3 AA2 7 TRP A 50 THR A 53 -1 O VAL A 52 N SER A 44 SHEET 4 AA2 7 ALA A 106 LEU A 110 -1 O ALA A 106 N THR A 53 SHEET 5 AA2 7 GLN A 81 PRO A 90 -1 N ILE A 89 O LEU A 107 SHEET 6 AA2 7 THR A 65 ALA A 68 -1 N VAL A 66 O ARG A 83 SHEET 7 AA2 7 GLN A 30 ASN A 34 -1 N ASN A 34 O THR A 65 SHEET 1 AA3 2 PHE B 98 LYS B 100 0 SHEET 2 AA3 2 VAL B 108 SER B 110 -1 O SER B 110 N PHE B 98 SHEET 1 AA4 2 TYR B 115 LEU B 117 0 SHEET 2 AA4 2 CYS B 124 PRO B 126 -1 O GLU B 125 N ARG B 116 SSBOND 1 CYS A 41 CYS A 57 1555 1555 2.04 SSBOND 2 CYS A 124 CYS B 132 1555 1555 2.05 SSBOND 3 CYS A 171 CYS A 185 1555 1555 2.03 SSBOND 4 CYS A 196 CYS A 224 1555 1555 2.06 SSBOND 5 CYS B 88 CYS B 99 1555 1555 2.04 SSBOND 6 CYS B 95 CYS B 109 1555 1555 2.03 SSBOND 7 CYS B 111 CYS B 124 1555 1555 2.05 LINK OE1 GLU A 70 NA NA A 304 1555 1555 2.24 LINK O ASN A 72 NA NA A 304 1555 1555 2.52 LINK O GLU A 75 NA NA A 304 1555 1555 2.24 LINK OE1 GLU A 77 NA NA A 304 1555 1555 3.10 LINK OE1 GLU A 80 NA NA A 304 1555 1555 2.49 SITE 1 AC1 4 ASN A 99 TYR A 101 THR A 178 TRP A 220 SITE 1 AC2 6 ASN A 93 ASN A 95 ASN A 99 ASN A 102 SITE 2 AC2 6 HIS A 103 HOH A 403 SITE 1 AC3 12 HIS A 56 ASP A 194 SER A 195 GLN A 197 SITE 2 AC3 12 SER A 200 SER A 219 TRP A 220 GLY A 221 SITE 3 AC3 12 GLU A 222 GLY A 231 CIT A 308 HOH A 424 SITE 1 AC4 5 GLU A 70 ASN A 72 GLU A 75 GLU A 77 SITE 2 AC4 5 GLU A 80 SITE 1 AC5 10 HIS A 103 TYR A 180 ASN A 181 ASN A 182 SITE 2 AC5 10 HIS A 189 GLU A 190 LYS A 227 ARG A 238 SITE 3 AC5 10 CIT A 306 HOH A 407 SITE 1 AC6 8 ASN A 181 ASN A 182 HIS A 189 LYS A 227 SITE 2 AC6 8 CIT A 305 HOH A 402 HOH A 405 HOH A 491 SITE 1 AC7 12 HIS A 91 HIS A 92 ARG A 162 PHE A 188 SITE 2 AC7 12 HIS A 189 ARG A 238 TYR A 239 ASN A 241 SITE 3 AC7 12 TRP A 242 HOH A 415 HOH A 427 HOH A 458 SITE 1 AC8 5 TYR A 101 TRP A 220 GLY A 221 GLU A 222 SITE 2 AC8 5 6NH A 303 CRYST1 100.548 100.548 98.495 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009945 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009945 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010153 0.00000