HEADER IMMUNE SYSTEM/VIRAL PROTEIN 29-MAY-20 6X78 TITLE VACCINE-ELICITED MOUSE FP-TARGETING NEUTRALIZING ANTIBODY VFP48.03 IN TITLE 2 COMPLEX WITH HIV FUSION PEPTIDE (RESIDUE 512-519) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBODY VFP48.03 LIGHT CHAIN; COMPND 3 CHAIN: A, L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTIBODY VFP48.03 HEAVY CHAIN; COMPND 7 CHAIN: B, H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HIV FUSION PEPTIDE 512-519 V2; COMPND 11 CHAIN: G, I; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 18 ORGANISM_COMMON: HIV-1; SOURCE 19 ORGANISM_TAXID: 11676 KEYWDS HIV, FUSION PEPTIDE, ANTIBODY, IMMUNE SYSTEM-VIRAL PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.XU,P.D.KWONG REVDAT 2 18-OCT-23 6X78 1 REMARK REVDAT 1 02-JUN-21 6X78 0 JRNL AUTH K.XU,P.D.KWONG JRNL TITL DISTINCT CLASSES OF HIV-1 CROSS-CLADE NEUTRALIZING JRNL TITL 2 ANTIBODIES TARGETING FUSION PEPTIDE ELICITED IN MICE BY JRNL TITL 3 DIVERSE IMMUNIZATION REGIMENS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 45542 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2295 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.9370 - 5.9386 1.00 2889 158 0.1834 0.2242 REMARK 3 2 5.9386 - 4.7163 1.00 2776 144 0.1511 0.1741 REMARK 3 3 4.7163 - 4.1209 1.00 2737 141 0.1283 0.1547 REMARK 3 4 4.1209 - 3.7444 1.00 2718 148 0.1610 0.2189 REMARK 3 5 3.7444 - 3.4762 0.99 2686 148 0.1675 0.2270 REMARK 3 6 3.4762 - 3.2714 1.00 2701 143 0.1842 0.2252 REMARK 3 7 3.2714 - 3.1076 1.00 2674 155 0.1880 0.2469 REMARK 3 8 3.1076 - 2.9724 1.00 2742 132 0.1898 0.2359 REMARK 3 9 2.9724 - 2.8580 1.00 2670 137 0.1884 0.2402 REMARK 3 10 2.8580 - 2.7594 1.00 2686 129 0.1959 0.2592 REMARK 3 11 2.7594 - 2.6731 1.00 2703 136 0.2079 0.2793 REMARK 3 12 2.6731 - 2.5968 1.00 2672 152 0.2087 0.2863 REMARK 3 13 2.5968 - 2.5284 0.99 2649 138 0.2136 0.2545 REMARK 3 14 2.5284 - 2.4667 1.00 2680 134 0.2224 0.2719 REMARK 3 15 2.4667 - 2.4107 1.00 2675 147 0.2256 0.3095 REMARK 3 16 2.4107 - 2.3594 0.98 2589 153 0.2343 0.2938 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 3 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN L REMARK 3 ATOM PAIRS NUMBER : 1314 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN B AND (RESID 1 THROUGH 158 OR REMARK 3 RESID 160 THROUGH 221)) REMARK 3 SELECTION : (CHAIN H AND (RESID 1 THROUGH 127 OR REMARK 3 RESID 133 THROUGH 158 OR RESID 160 REMARK 3 THROUGH 220)) REMARK 3 ATOM PAIRS NUMBER : 1294 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN G REMARK 3 SELECTION : CHAIN I REMARK 3 ATOM PAIRS NUMBER : 24 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6X78 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000249680. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45627 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.359 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.14500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.74600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 6CDO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8.5, 25% W/V PEG3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.99650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.71200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.36650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.71200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.99650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.36650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 214 REMARK 465 SER B 128 REMARK 465 ALA B 129 REMARK 465 ALA B 130 REMARK 465 GLN B 131 REMARK 465 THR B 132 REMARK 465 CYS B 222 REMARK 465 ASP B 223 REMARK 465 LYS B 224 REMARK 465 GLY B 225 REMARK 465 LEU B 226 REMARK 465 GLU B 227 REMARK 465 VAL B 228 REMARK 465 LEU B 229 REMARK 465 PHE B 230 REMARK 465 GLN B 231 REMARK 465 GLY B 232 REMARK 465 CYS H 221 REMARK 465 ASP H 222 REMARK 465 LYS H 223 REMARK 465 GLY H 224 REMARK 465 LEU H 225 REMARK 465 GLU H 226 REMARK 465 VAL H 227 REMARK 465 LEU H 228 REMARK 465 PHE H 229 REMARK 465 GLN H 230 REMARK 465 GLY H 231 REMARK 465 CYS L 214 REMARK 465 ALA G 517 REMARK 465 VAL G 518 REMARK 465 PHE G 519 REMARK 465 ALA I 517 REMARK 465 VAL I 518 REMARK 465 PHE I 519 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 159 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU H 197 O HOH H 301 1.85 REMARK 500 NE2 GLN H 105 O HOH H 302 1.88 REMARK 500 O HOH H 312 O HOH H 404 1.91 REMARK 500 O HOH A 398 O HOH A 418 1.91 REMARK 500 O HOH A 399 O HOH A 414 1.93 REMARK 500 OD1 ASN B 60 CE LYS B 62 1.98 REMARK 500 O ASP L 110 O HOH L 401 1.99 REMARK 500 O ASN A 161 O HOH A 301 2.00 REMARK 500 O HOH A 377 O HOH A 406 2.05 REMARK 500 O HOH B 419 O HOH L 457 2.05 REMARK 500 O HOH H 315 O HOH H 399 2.06 REMARK 500 O HOH B 340 O HOH B 413 2.07 REMARK 500 OE2 GLU A 213 O HOH A 302 2.09 REMARK 500 O HOH B 395 O HOH B 411 2.09 REMARK 500 O HOH A 399 O HOH B 385 2.11 REMARK 500 O HOH L 420 O HOH L 515 2.11 REMARK 500 O HOH B 375 O HOH B 402 2.12 REMARK 500 O HOH B 308 O HOH B 408 2.12 REMARK 500 O HOH H 406 O HOH H 412 2.13 REMARK 500 OG SER B 82A O HOH B 301 2.14 REMARK 500 O TRP A 163 O HOH A 303 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 367 O HOH H 408 4465 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 140 CA - CB - SG ANGL. DEV. = 9.7 DEGREES REMARK 500 CYS B 202 CA - CB - SG ANGL. DEV. = 7.1 DEGREES REMARK 500 ARG L 77 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG L 188 CB - CG - CD ANGL. DEV. = 16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 8 94.05 84.50 REMARK 500 LEU A 50 84.69 55.51 REMARK 500 VAL A 51 -33.51 -13.19 REMARK 500 ASN A 212 48.65 -77.14 REMARK 500 ASP B 177 -4.22 70.71 REMARK 500 LYS H 64 67.20 -69.38 REMARK 500 ASP H 176 -5.20 70.98 REMARK 500 ALA L 8 82.91 83.44 REMARK 500 LEU L 50 84.78 54.59 REMARK 500 VAL L 51 -35.12 -13.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 50 VAL A 51 -138.25 REMARK 500 LEU L 50 VAL L 51 -137.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 L 301 DBREF 6X78 A 1 214 PDB 6X78 6X78 1 214 DBREF 6X78 B 1 232 PDB 6X78 6X78 1 232 DBREF 6X78 H 1 231 PDB 6X78 6X78 1 231 DBREF 6X78 L 1 214 PDB 6X78 6X78 1 214 DBREF 6X78 G 512 519 PDB 6X78 6X78 512 519 DBREF 6X78 I 512 519 PDB 6X78 6X78 512 519 SEQRES 1 A 219 ASP VAL VAL MET THR GLN THR ALA LEU THR LEU SER VAL SEQRES 2 A 219 THR ILE GLY GLN PRO ALA SER ILE SER CYS LYS SER SER SEQRES 3 A 219 GLN SER LEU LEU ASP SER ASP GLY LYS THR TYR LEU ASN SEQRES 4 A 219 TRP LEU LEU GLN ARG PRO GLY GLN SER PRO LYS ARG LEU SEQRES 5 A 219 ILE TYR LEU VAL SER LYS LEU ASP SER GLY VAL PRO ASP SEQRES 6 A 219 ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 A 219 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 A 219 TYR CYS TRP GLN GLY THR HIS PHE PRO GLN THR PHE GLY SEQRES 9 A 219 GLY GLY THR ARG LEU GLU ILE LYS ARG THR ASP ALA ALA SEQRES 10 A 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 A 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 A 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 A 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 A 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 A 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 A 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 A 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 B 234 GLN VAL GLN LEU GLN GLN PRO GLY ALA GLU PHE VAL LYS SEQRES 2 B 234 PRO GLY ALA SER VAL ARG MET SER CYS LYS ALA SER GLY SEQRES 3 B 234 TYR THR PHE THR SER TYR TRP ILE ALA TRP VAL LYS GLN SEQRES 4 B 234 ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY ASP ILE TYR SEQRES 5 B 234 PRO GLY SER GLY TYR THR ASN TYR ASN GLY LYS LEU LYS SEQRES 6 B 234 ASN ARG ALA THR LEU THR VAL ASP THR SER SER ASN THR SEQRES 7 B 234 ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 B 234 ALA VAL TYR TYR CYS THR ARG GLY GLY THR THR PHE VAL SEQRES 9 B 234 ALA GLU PRO TRP LEU ALA TYR TRP GLY GLN GLY THR LEU SEQRES 10 B 234 VAL ALA VAL SER ALA ALA SER THR THR PRO PRO SER VAL SEQRES 11 B 234 TYR PRO LEU ALA PRO GLY SER ALA ALA GLN THR ASN SER SEQRES 12 B 234 MET VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO SEQRES 13 B 234 GLU PRO VAL THR VAL THR TRP ASN SER GLY SER LEU SER SEQRES 14 B 234 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP SEQRES 15 B 234 LEU TYR THR LEU SER SER SER VAL THR VAL PRO SER SER SEQRES 16 B 234 THR TRP PRO SER GLU THR VAL THR CYS ASN VAL ALA HIS SEQRES 17 B 234 PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE VAL PRO SEQRES 18 B 234 ARG ASP CYS ASP LYS GLY LEU GLU VAL LEU PHE GLN GLY SEQRES 1 H 234 GLN VAL GLN LEU GLN GLN PRO GLY ALA GLU PHE VAL LYS SEQRES 2 H 234 PRO GLY ALA SER VAL ARG MET SER CYS LYS ALA SER GLY SEQRES 3 H 234 TYR THR PHE THR SER TYR TRP ILE ALA TRP VAL LYS GLN SEQRES 4 H 234 ARG PRO GLY GLN GLY LEU GLU TRP ILE GLY ASP ILE TYR SEQRES 5 H 234 PRO GLY SER GLY TYR THR ASN TYR ASN GLY LYS LEU LYS SEQRES 6 H 234 ASN ARG ALA THR LEU THR VAL ASP THR SER SER ASN THR SEQRES 7 H 234 ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 H 234 ALA VAL TYR TYR CYS THR ARG GLY GLY THR THR PHE VAL SEQRES 9 H 234 ALA GLU PRO TRP LEU ALA TYR TRP GLY GLN GLY THR LEU SEQRES 10 H 234 VAL ALA VAL SER ALA ALA SER THR THR PRO PRO SER VAL SEQRES 11 H 234 TYR PRO LEU ALA PRO GLY SER ALA ALA GLN THR ASN SER SEQRES 12 H 234 MET VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO SEQRES 13 H 234 GLU PRO VAL THR VAL THR TRP ASN SER GLY SER LEU SER SEQRES 14 H 234 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP SEQRES 15 H 234 LEU TYR THR LEU SER SER SER VAL THR VAL PRO SER SER SEQRES 16 H 234 THR TRP PRO SER GLU THR VAL THR CYS ASN VAL ALA HIS SEQRES 17 H 234 PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE VAL PRO SEQRES 18 H 234 ARG ASP CYS ASP LYS GLY LEU GLU VAL LEU PHE GLN GLY SEQRES 1 L 219 ASP VAL VAL MET THR GLN THR ALA LEU THR LEU SER VAL SEQRES 2 L 219 THR ILE GLY GLN PRO ALA SER ILE SER CYS LYS SER SER SEQRES 3 L 219 GLN SER LEU LEU ASP SER ASP GLY LYS THR TYR LEU ASN SEQRES 4 L 219 TRP LEU LEU GLN ARG PRO GLY GLN SER PRO LYS ARG LEU SEQRES 5 L 219 ILE TYR LEU VAL SER LYS LEU ASP SER GLY VAL PRO ASP SEQRES 6 L 219 ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 219 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 L 219 TYR CYS TRP GLN GLY THR HIS PHE PRO GLN THR PHE GLY SEQRES 9 L 219 GLY GLY THR ARG LEU GLU ILE LYS ARG THR ASP ALA ALA SEQRES 10 L 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 L 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 L 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 L 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 L 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 L 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 L 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 G 8 ALA VAL GLY LEU GLY ALA VAL PHE SEQRES 1 I 8 ALA VAL GLY LEU GLY ALA VAL PHE HET SO4 L 301 5 HETNAM SO4 SULFATE ION FORMUL 7 SO4 O4 S 2- FORMUL 8 HOH *496(H2 O) HELIX 1 AA1 GLU A 79 LEU A 83 5 5 HELIX 2 AA2 SER A 121 SER A 127 1 7 HELIX 3 AA3 LYS A 183 GLU A 187 1 5 HELIX 4 AA4 THR B 28 TYR B 32 5 5 HELIX 5 AA5 GLY B 61 LYS B 64 5 4 HELIX 6 AA6 THR B 83 SER B 87 5 5 HELIX 7 AA7 SER B 157 SER B 159 5 3 HELIX 8 AA8 PRO B 207 SER B 210 5 4 HELIX 9 AA9 THR H 28 TYR H 32 5 5 HELIX 10 AB1 THR H 83 SER H 87 5 5 HELIX 11 AB2 SER H 157 SER H 159 5 3 HELIX 12 AB3 SER H 189 TRP H 193 5 3 HELIX 13 AB4 PRO H 206 SER H 209 5 4 HELIX 14 AB5 GLU L 79 LEU L 83 5 5 HELIX 15 AB6 SER L 121 SER L 127 1 7 HELIX 16 AB7 LYS L 183 GLU L 187 1 5 SHEET 1 AA1 4 MET A 4 THR A 7 0 SHEET 2 AA1 4 ALA A 19 SER A 25 -1 O LYS A 24 N THR A 5 SHEET 3 AA1 4 ASP A 70 ILE A 75 -1 O PHE A 71 N CYS A 23 SHEET 4 AA1 4 PHE A 62 SER A 67 -1 N THR A 63 O LYS A 74 SHEET 1 AA2 6 THR A 10 VAL A 13 0 SHEET 2 AA2 6 THR A 102 ILE A 106 1 O GLU A 105 N VAL A 13 SHEET 3 AA2 6 GLY A 84 GLN A 90 -1 N GLY A 84 O LEU A 104 SHEET 4 AA2 6 LEU A 33 GLN A 38 -1 N LEU A 36 O TYR A 87 SHEET 5 AA2 6 LYS A 45 TYR A 49 -1 O LYS A 45 N LEU A 37 SHEET 6 AA2 6 LYS A 53 LEU A 54 -1 O LYS A 53 N TYR A 49 SHEET 1 AA3 4 THR A 10 VAL A 13 0 SHEET 2 AA3 4 THR A 102 ILE A 106 1 O GLU A 105 N VAL A 13 SHEET 3 AA3 4 GLY A 84 GLN A 90 -1 N GLY A 84 O LEU A 104 SHEET 4 AA3 4 THR A 97 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 AA4 4 THR A 114 PHE A 118 0 SHEET 2 AA4 4 GLY A 129 PHE A 139 -1 O PHE A 135 N SER A 116 SHEET 3 AA4 4 TYR A 173 THR A 182 -1 O LEU A 181 N ALA A 130 SHEET 4 AA4 4 VAL A 159 TRP A 163 -1 N SER A 162 O SER A 176 SHEET 1 AA5 4 SER A 153 ARG A 155 0 SHEET 2 AA5 4 ASN A 145 ILE A 150 -1 N ILE A 150 O SER A 153 SHEET 3 AA5 4 SER A 191 THR A 197 -1 O GLU A 195 N LYS A 147 SHEET 4 AA5 4 ILE A 205 ASN A 210 -1 O ILE A 205 N ALA A 196 SHEET 1 AA6 4 GLN B 3 GLN B 5 0 SHEET 2 AA6 4 VAL B 18 SER B 25 -1 O LYS B 23 N GLN B 5 SHEET 3 AA6 4 THR B 77 LEU B 82 -1 O MET B 80 N MET B 20 SHEET 4 AA6 4 ALA B 67 ASP B 72 -1 N THR B 70 O TYR B 79 SHEET 1 AA7 6 ALA B 9 VAL B 12 0 SHEET 2 AA7 6 THR B 107 VAL B 111 1 O LEU B 108 N GLU B 10 SHEET 3 AA7 6 ALA B 88 ARG B 94 -1 N ALA B 88 O VAL B 109 SHEET 4 AA7 6 ILE B 34 GLN B 39 -1 N ALA B 35 O THR B 93 SHEET 5 AA7 6 LEU B 45 ILE B 51 -1 O GLU B 46 N LYS B 38 SHEET 6 AA7 6 THR B 57 TYR B 59 -1 O ASN B 58 N ASP B 50 SHEET 1 AA8 4 SER B 120 LEU B 124 0 SHEET 2 AA8 4 MET B 135 TYR B 145 -1 O GLY B 139 N LEU B 124 SHEET 3 AA8 4 LEU B 178 PRO B 188 -1 O LEU B 181 N VAL B 142 SHEET 4 AA8 4 VAL B 165 THR B 167 -1 N HIS B 166 O SER B 184 SHEET 1 AA9 4 SER B 120 LEU B 124 0 SHEET 2 AA9 4 MET B 135 TYR B 145 -1 O GLY B 139 N LEU B 124 SHEET 3 AA9 4 LEU B 178 PRO B 188 -1 O LEU B 181 N VAL B 142 SHEET 4 AA9 4 VAL B 171 GLN B 173 -1 N GLN B 173 O LEU B 178 SHEET 1 AB1 3 THR B 151 TRP B 155 0 SHEET 2 AB1 3 THR B 201 HIS B 206 -1 O ASN B 203 N THR B 154 SHEET 3 AB1 3 THR B 211 LYS B 216 -1 O VAL B 213 N VAL B 204 SHEET 1 AB2 4 GLN H 3 GLN H 5 0 SHEET 2 AB2 4 VAL H 18 SER H 25 -1 O LYS H 23 N GLN H 5 SHEET 3 AB2 4 THR H 77 LEU H 82 -1 O MET H 80 N MET H 20 SHEET 4 AB2 4 ALA H 67 ASP H 72 -1 N THR H 70 O TYR H 79 SHEET 1 AB3 6 ALA H 9 VAL H 12 0 SHEET 2 AB3 6 THR H 107 VAL H 111 1 O LEU H 108 N GLU H 10 SHEET 3 AB3 6 ALA H 88 ARG H 94 -1 N ALA H 88 O VAL H 109 SHEET 4 AB3 6 ILE H 34 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AB3 6 GLU H 46 ILE H 51 -1 O GLU H 46 N LYS H 38 SHEET 6 AB3 6 THR H 57 TYR H 59 -1 O ASN H 58 N ASP H 50 SHEET 1 AB4 4 SER H 120 LEU H 124 0 SHEET 2 AB4 4 MET H 135 TYR H 145 -1 O LEU H 141 N TYR H 122 SHEET 3 AB4 4 LEU H 177 PRO H 187 -1 O VAL H 186 N VAL H 136 SHEET 4 AB4 4 VAL H 164 THR H 166 -1 N HIS H 165 O SER H 183 SHEET 1 AB5 4 SER H 120 LEU H 124 0 SHEET 2 AB5 4 MET H 135 TYR H 145 -1 O LEU H 141 N TYR H 122 SHEET 3 AB5 4 LEU H 177 PRO H 187 -1 O VAL H 186 N VAL H 136 SHEET 4 AB5 4 VAL H 170 GLN H 172 -1 N GLN H 172 O LEU H 177 SHEET 1 AB6 3 THR H 151 TRP H 155 0 SHEET 2 AB6 3 THR H 200 HIS H 205 -1 O ASN H 202 N THR H 154 SHEET 3 AB6 3 THR H 210 LYS H 215 -1 O VAL H 212 N VAL H 203 SHEET 1 AB7 4 MET L 4 THR L 7 0 SHEET 2 AB7 4 ALA L 19 SER L 25 -1 O LYS L 24 N THR L 5 SHEET 3 AB7 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AB7 4 PHE L 62 SER L 67 -1 N SER L 65 O THR L 72 SHEET 1 AB8 6 THR L 10 VAL L 13 0 SHEET 2 AB8 6 THR L 102 ILE L 106 1 O GLU L 105 N VAL L 13 SHEET 3 AB8 6 GLY L 84 GLN L 90 -1 N GLY L 84 O LEU L 104 SHEET 4 AB8 6 LEU L 33 GLN L 38 -1 N LEU L 36 O TYR L 87 SHEET 5 AB8 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AB8 6 LYS L 53 LEU L 54 -1 O LYS L 53 N TYR L 49 SHEET 1 AB9 4 THR L 10 VAL L 13 0 SHEET 2 AB9 4 THR L 102 ILE L 106 1 O GLU L 105 N VAL L 13 SHEET 3 AB9 4 GLY L 84 GLN L 90 -1 N GLY L 84 O LEU L 104 SHEET 4 AB9 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AC1 4 THR L 114 PHE L 118 0 SHEET 2 AC1 4 GLY L 129 PHE L 139 -1 O PHE L 135 N SER L 116 SHEET 3 AC1 4 TYR L 173 THR L 182 -1 O LEU L 181 N ALA L 130 SHEET 4 AC1 4 VAL L 159 TRP L 163 -1 N SER L 162 O SER L 176 SHEET 1 AC2 4 SER L 153 ARG L 155 0 SHEET 2 AC2 4 ASN L 145 ILE L 150 -1 N ILE L 150 O SER L 153 SHEET 3 AC2 4 SER L 191 THR L 197 -1 O THR L 197 N ASN L 145 SHEET 4 AC2 4 ILE L 205 ASN L 210 -1 O ILE L 205 N ALA L 196 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.02 SSBOND 2 CYS A 134 CYS A 194 1555 1555 2.05 SSBOND 3 CYS B 22 CYS B 92 1555 1555 2.03 SSBOND 4 CYS B 140 CYS B 202 1555 1555 2.06 SSBOND 5 CYS H 22 CYS H 92 1555 1555 2.02 SSBOND 6 CYS H 140 CYS H 201 1555 1555 2.00 SSBOND 7 CYS L 23 CYS L 88 1555 1555 2.08 SSBOND 8 CYS L 134 CYS L 194 1555 1555 2.06 CISPEP 1 PHE A 94 PRO A 95 0 -10.09 CISPEP 2 TYR A 140 PRO A 141 0 -0.55 CISPEP 3 PHE B 146 PRO B 147 0 -2.93 CISPEP 4 GLU B 148 PRO B 149 0 -1.23 CISPEP 5 TRP B 194 PRO B 196 0 8.53 CISPEP 6 PHE H 146 PRO H 147 0 -2.96 CISPEP 7 GLU H 148 PRO H 149 0 -0.93 CISPEP 8 TRP H 193 PRO H 195 0 11.83 CISPEP 9 TYR L 140 PRO L 141 0 0.19 SITE 1 AC1 6 SER B 161 SER B 162 ARG L 155 GLN L 156 SITE 2 AC1 6 ASN L 157 HOH L 441 CRYST1 81.993 92.733 143.424 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012196 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010784 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006972 0.00000