HEADER CYTOSOLIC PROTEIN 04-JUN-20 6XA8 TITLE CRYSTAL STRUCTURE OF HUMAN SCRIBBLE PDZ1:VANGL2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN SCRIBBLE HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HSCRIB,PROTEIN LAP4; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: C-TERMINAL PEPTIDE OF VANGL2; COMPND 8 CHAIN: C, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SCRIB, CRIB1, KIAA0147, LAP4, SCRB1, VARTUL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS CELL POLARITY, SCRIBBLE, CYTOSOLIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.Y.HOW,M.KVANSAKUL REVDAT 3 18-OCT-23 6XA8 1 REMARK REVDAT 2 21-APR-21 6XA8 1 JRNL REVDAT 1 24-MAR-21 6XA8 0 JRNL AUTH J.Y.HOW,R.K.STEPHENS,K.Y.B.LIM,P.O.HUMBERT,M.KVANSAKUL JRNL TITL STRUCTURAL BASIS OF THE HUMAN SCRIBBLE-VANGL2 ASSOCIATION IN JRNL TITL 2 HEALTH AND DISEASE. JRNL REF BIOCHEM.J. V. 478 1321 2021 JRNL REFN ESSN 1470-8728 JRNL PMID 33684218 JRNL DOI 10.1042/BCJ20200816 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.470 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 15606 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.259 REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 778 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.7000 - 4.0000 1.00 2559 142 0.2213 0.2190 REMARK 3 2 4.0000 - 3.1700 1.00 2486 134 0.2634 0.2810 REMARK 3 3 3.1700 - 2.7700 1.00 2433 123 0.3175 0.3527 REMARK 3 4 2.7700 - 2.5200 0.99 2446 136 0.2996 0.3813 REMARK 3 5 2.5200 - 2.3400 1.00 2440 114 0.3155 0.3434 REMARK 3 6 2.3400 - 2.2000 0.99 2464 129 0.3477 0.3283 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.277 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.287 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1625 REMARK 3 ANGLE : 0.522 2190 REMARK 3 CHIRALITY : 0.048 250 REMARK 3 PLANARITY : 0.003 290 REMARK 3 DIHEDRAL : 30.193 589 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XA8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000249536. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9357 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15662 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 51.703 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.77800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6MS1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M PHOSPHATE/CITRATE PH 4.2 AND 40% REMARK 280 (V/V) PEG 300, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z+1/2 REMARK 290 7555 -X,Y+1/2,-Z+1/2 REMARK 290 8555 X,-Y+1/2,-Z+1/2 REMARK 290 9555 X+1/2,Y,Z+1/2 REMARK 290 10555 -X+1/2,-Y,Z+1/2 REMARK 290 11555 -X+1/2,Y,-Z+1/2 REMARK 290 12555 X+1/2,-Y,-Z+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z REMARK 290 14555 -X+1/2,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y+1/2,-Z REMARK 290 16555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.68950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 106.36900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.68950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 106.36900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.68950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 106.36900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.68950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 106.36900 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 37.68950 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 106.36900 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 37.68950 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 106.36900 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 37.68950 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 106.36900 REMARK 290 SMTRY1 12 1.000000 0.000000 0.000000 37.68950 REMARK 290 SMTRY2 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 106.36900 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 37.68950 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 37.68950 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 37.68950 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 37.68950 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 37.68950 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 37.68950 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 37.68950 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 37.68950 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B1104 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 501 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 401 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 695 REMARK 465 PRO A 696 REMARK 465 LEU A 697 REMARK 465 GLY A 698 REMARK 465 SER A 699 REMARK 465 SER A 700 REMARK 465 ALA A 701 REMARK 465 PRO A 702 REMARK 465 SER A 703 REMARK 465 VAL A 704 REMARK 465 LYS A 705 REMARK 465 GLY A 706 REMARK 465 VAL A 707 REMARK 465 SER A 708 REMARK 465 PHE A 709 REMARK 465 ASP A 710 REMARK 465 GLN A 711 REMARK 465 ALA A 712 REMARK 465 ASN A 713 REMARK 465 ASN A 714 REMARK 465 GLY B 695 REMARK 465 PRO B 696 REMARK 465 LEU B 697 REMARK 465 GLY B 698 REMARK 465 SER B 699 REMARK 465 SER B 700 REMARK 465 ALA B 701 REMARK 465 PRO B 702 REMARK 465 SER B 703 REMARK 465 VAL B 704 REMARK 465 LYS B 705 REMARK 465 GLY B 706 REMARK 465 VAL B 707 REMARK 465 SER B 708 REMARK 465 PHE B 709 REMARK 465 ASP B 710 REMARK 465 GLN B 711 REMARK 465 ALA B 712 REMARK 465 ASN B 713 REMARK 465 ASN B 714 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 715 CG CD1 CD2 REMARK 470 LEU A 716 CG CD1 CD2 REMARK 470 LYS A 746 CG CD CE NZ REMARK 470 GLU A 766 CG CD OE1 OE2 REMARK 470 GLN A 789 CG CD OE1 NE2 REMARK 470 ARG A 801 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 715 CG CD1 CD2 REMARK 470 LEU B 716 CG CD1 CD2 REMARK 470 ARG B 762 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 789 CG CD OE1 NE2 REMARK 470 ARG B 801 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH11 ARG A 733 O ALA A 803 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 C 401 DBREF 6XA8 A 700 816 UNP Q14160 SCRIB_HUMAN 700 816 DBREF 6XA8 B 700 816 UNP Q14160 SCRIB_HUMAN 700 816 DBREF 6XA8 C 205 211 PDB 6XA8 6XA8 205 211 DBREF 6XA8 D 385 391 PDB 6XA8 6XA8 385 391 SEQADV 6XA8 GLY A 695 UNP Q14160 EXPRESSION TAG SEQADV 6XA8 PRO A 696 UNP Q14160 EXPRESSION TAG SEQADV 6XA8 LEU A 697 UNP Q14160 EXPRESSION TAG SEQADV 6XA8 GLY A 698 UNP Q14160 EXPRESSION TAG SEQADV 6XA8 SER A 699 UNP Q14160 EXPRESSION TAG SEQADV 6XA8 GLY B 695 UNP Q14160 EXPRESSION TAG SEQADV 6XA8 PRO B 696 UNP Q14160 EXPRESSION TAG SEQADV 6XA8 LEU B 697 UNP Q14160 EXPRESSION TAG SEQADV 6XA8 GLY B 698 UNP Q14160 EXPRESSION TAG SEQADV 6XA8 SER B 699 UNP Q14160 EXPRESSION TAG SEQRES 1 A 122 GLY PRO LEU GLY SER SER ALA PRO SER VAL LYS GLY VAL SEQRES 2 A 122 SER PHE ASP GLN ALA ASN ASN LEU LEU ILE GLU PRO ALA SEQRES 3 A 122 ARG ILE GLU GLU GLU GLU LEU THR LEU THR ILE LEU ARG SEQRES 4 A 122 GLN THR GLY GLY LEU GLY ILE SER ILE ALA GLY GLY LYS SEQRES 5 A 122 GLY SER THR PRO TYR LYS GLY ASP ASP GLU GLY ILE PHE SEQRES 6 A 122 ILE SER ARG VAL SER GLU GLU GLY PRO ALA ALA ARG ALA SEQRES 7 A 122 GLY VAL ARG VAL GLY ASP LYS LEU LEU GLU VAL ASN GLY SEQRES 8 A 122 VAL ALA LEU GLN GLY ALA GLU HIS HIS GLU ALA VAL GLU SEQRES 9 A 122 ALA LEU ARG GLY ALA GLY THR ALA VAL GLN MET ARG VAL SEQRES 10 A 122 TRP ARG GLU ARG MET SEQRES 1 B 122 GLY PRO LEU GLY SER SER ALA PRO SER VAL LYS GLY VAL SEQRES 2 B 122 SER PHE ASP GLN ALA ASN ASN LEU LEU ILE GLU PRO ALA SEQRES 3 B 122 ARG ILE GLU GLU GLU GLU LEU THR LEU THR ILE LEU ARG SEQRES 4 B 122 GLN THR GLY GLY LEU GLY ILE SER ILE ALA GLY GLY LYS SEQRES 5 B 122 GLY SER THR PRO TYR LYS GLY ASP ASP GLU GLY ILE PHE SEQRES 6 B 122 ILE SER ARG VAL SER GLU GLU GLY PRO ALA ALA ARG ALA SEQRES 7 B 122 GLY VAL ARG VAL GLY ASP LYS LEU LEU GLU VAL ASN GLY SEQRES 8 B 122 VAL ALA LEU GLN GLY ALA GLU HIS HIS GLU ALA VAL GLU SEQRES 9 B 122 ALA LEU ARG GLY ALA GLY THR ALA VAL GLN MET ARG VAL SEQRES 10 B 122 TRP ARG GLU ARG MET SEQRES 1 C 7 LEU GLN SER GLU THR SER VAL SEQRES 1 D 7 LEU GLN SER GLU THR SER VAL HET EDO A1101 10 HET PO4 A1102 5 HET PO4 A1103 5 HET EDO B1001 10 HET EDO B1002 10 HET PO4 B1003 5 HET PO4 C 401 5 HETNAM EDO 1,2-ETHANEDIOL HETNAM PO4 PHOSPHATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 5 EDO 3(C2 H6 O2) FORMUL 6 PO4 4(O4 P 3-) FORMUL 12 HOH *11(H2 O) HELIX 1 AA1 GLY A 767 ALA A 772 1 6 HELIX 2 AA2 GLU A 792 GLY A 802 1 11 HELIX 3 AA3 GLY B 767 GLY B 773 1 7 HELIX 4 AA4 GLU B 792 GLY B 802 1 11 SHEET 1 AA110 VAL A 786 ALA A 787 0 SHEET 2 AA110 LYS A 779 VAL A 783 -1 N VAL A 783 O VAL A 786 SHEET 3 AA110 ALA A 806 GLU A 814 -1 O TRP A 812 N LYS A 779 SHEET 4 AA110 ARG A 721 LEU A 732 -1 N GLU A 725 O ARG A 813 SHEET 5 AA110 ARG B 721 LEU B 732 -1 O GLU B 726 N GLU A 723 SHEET 6 AA110 ALA B 806 GLU B 814 -1 O MET B 809 N LEU B 729 SHEET 7 AA110 LYS B 779 VAL B 783 -1 N LYS B 779 O TRP B 812 SHEET 8 AA110 ILE B 758 VAL B 763 -1 N ILE B 758 O LEU B 780 SHEET 9 AA110 ILE B 740 ALA B 743 -1 N SER B 741 O SER B 761 SHEET 10 AA110 GLU C 208 SER C 210 -1 O THR C 209 N ILE B 742 SHEET 1 AA210 VAL B 786 ALA B 787 0 SHEET 2 AA210 LYS B 779 VAL B 783 -1 N VAL B 783 O VAL B 786 SHEET 3 AA210 ALA B 806 GLU B 814 -1 O TRP B 812 N LYS B 779 SHEET 4 AA210 ARG B 721 LEU B 732 -1 N LEU B 729 O MET B 809 SHEET 5 AA210 ARG A 721 LEU A 732 -1 N GLU A 723 O GLU B 726 SHEET 6 AA210 ALA A 806 GLU A 814 -1 O ARG A 813 N GLU A 725 SHEET 7 AA210 LYS A 779 VAL A 783 -1 N LYS A 779 O TRP A 812 SHEET 8 AA210 ILE A 758 VAL A 763 -1 N ILE A 758 O LEU A 780 SHEET 9 AA210 ILE A 740 ALA A 743 -1 N SER A 741 O SER A 761 SHEET 10 AA210 GLU D 388 SER D 390 -1 O THR D 389 N ILE A 742 SITE 1 AC1 1 LYS A 779 SITE 1 AC2 6 GLU A 792 HIS A 793 HIS A 794 VAL A 797 SITE 2 AC2 6 GLU A 798 LEU D 385 SITE 1 AC3 5 GLY A 739 ARG A 762 SER A 764 SER D 390 SITE 2 AC3 5 VAL D 391 SITE 1 AC4 1 LYS B 779 SITE 1 AC5 5 SER B 748 HIS B 793 HIS B 794 GLU B 798 SITE 2 AC5 5 SER C 207 SITE 1 AC6 3 GLY B 737 GLY B 739 SER B 764 CRYST1 75.379 75.379 212.738 90.00 90.00 90.00 F 2 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013266 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013266 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004701 0.00000