HEADER DNA BINDING PROTEIN/DNA/RNA 07-JUN-20 6XBU TITLE POLYMERASE DOMAIN OF POLYMERASE-THETA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE THETA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DNA POLYMERASE ETA,DNA POLYMERASE ETA,DNA POLYMERASE ETA,DNA COMPND 5 POLYMERASE ETA,DNA POLYMERASE ETA,DNA POLYMERASE ETA; COMPND 6 EC: 2.7.7.7; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(P*GP*TP*CP*AP*TP*TP*G)-3'); COMPND 10 CHAIN: F; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: RNA (5'-R(P*CP*CP*AP*AP*UP*GP*A)-3'); COMPND 14 CHAIN: E; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POLQ, POLH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS REPLICATION, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.CHEN,R.POMERANTZ,J.ZHAO REVDAT 3 18-OCT-23 6XBU 1 REMARK REVDAT 2 22-SEP-21 6XBU 1 JRNL REVDAT 1 09-JUN-21 6XBU 0 JRNL AUTH G.CHANDRAMOULY,J.ZHAO,S.MCDEVITT,T.RUSANOV,T.HOANG, JRNL AUTH 2 N.BORISONNIK,T.TREDDINICK,F.W.LOPEZCOLORADO,T.KENT, JRNL AUTH 3 L.A.SIDDIQUE,J.MALLON,J.HUHN,Z.SHODA,E.KASHKINA,A.BRAMBATI, JRNL AUTH 4 J.M.STARK,X.S.CHEN,R.T.POMERANTZ JRNL TITL POL THETA REVERSE TRANSCRIBES RNA AND PROMOTES RNA-TEMPLATED JRNL TITL 2 DNA REPAIR. JRNL REF SCI ADV V. 7 2021 JRNL REFN ESSN 2375-2548 JRNL PMID 34117057 JRNL DOI 10.1126/SCIADV.ABF1771 REMARK 2 REMARK 2 RESOLUTION. 3.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12-2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 32393 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2171 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.7600 - 8.2787 1.00 1889 138 0.2011 0.2311 REMARK 3 2 8.2787 - 6.5759 1.00 1873 134 0.2396 0.2239 REMARK 3 3 6.5759 - 5.7460 1.00 1905 150 0.2756 0.2898 REMARK 3 4 5.7460 - 5.2213 1.00 1878 138 0.2534 0.3101 REMARK 3 5 5.2213 - 4.8474 1.00 1921 128 0.2267 0.3134 REMARK 3 6 4.8474 - 4.5618 1.00 1893 130 0.2193 0.2776 REMARK 3 7 4.5618 - 4.3335 1.00 1854 134 0.2216 0.2658 REMARK 3 8 4.3335 - 4.1449 1.00 1920 132 0.2471 0.2431 REMARK 3 9 4.1449 - 3.9854 0.99 1846 137 0.2750 0.2754 REMARK 3 10 3.9854 - 3.8480 1.00 1916 134 0.2701 0.3064 REMARK 3 11 3.8480 - 3.7277 1.00 1924 126 0.2681 0.2716 REMARK 3 12 3.7277 - 3.6212 1.00 1879 134 0.2999 0.3573 REMARK 3 13 3.6212 - 3.5259 0.99 1872 138 0.3316 0.3605 REMARK 3 14 3.5259 - 3.4399 1.00 1845 134 0.3783 0.3824 REMARK 3 15 3.4399 - 3.3617 0.99 1930 146 0.3656 0.4363 REMARK 3 16 3.3617 - 3.2902 1.00 1877 138 0.3820 0.3851 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.540 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 108.6 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 121.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 5240 REMARK 3 ANGLE : 1.763 7134 REMARK 3 CHIRALITY : 0.089 807 REMARK 3 PLANARITY : 0.004 853 REMARK 3 DIHEDRAL : 22.257 1980 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XBU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000249890. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : PROCOR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32393 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 49.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.30400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 13.20 REMARK 200 R MERGE FOR SHELL (I) : 3.25100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.0 REMARK 200 STARTING MODEL: 4X0Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) ETHANOL, PH 8.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.38333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 128.76667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 128.76667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 64.38333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 58290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -64.38333 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1819 REMARK 465 SER A 1820 REMARK 465 SER A 1821 REMARK 465 SER A 1822 REMARK 465 SER A 1894 REMARK 465 GLY A 1930 REMARK 465 GLY A 1931 REMARK 465 SER A 1932 REMARK 465 GLY A 1933 REMARK 465 GLY A 1934 REMARK 465 ASN A 2035 REMARK 465 ALA A 2036 REMARK 465 GLY A 2037 REMARK 465 ALA A 2117 REMARK 465 TYR A 2118 REMARK 465 GLN A 2119 REMARK 465 LEU A 2120 REMARK 465 ALA A 2121 REMARK 465 GLY A 2122 REMARK 465 HIS A 2123 REMARK 465 SER A 2124 REMARK 465 PHE A 2125 REMARK 465 GLU A 2165 REMARK 465 LEU A 2166 REMARK 465 LYS A 2167 REMARK 465 LEU A 2168 REMARK 465 PRO A 2169 REMARK 465 PRO A 2170 REMARK 465 GLY A 2171 REMARK 465 GLY A 2172 REMARK 465 SER A 2173 REMARK 465 GLY A 2174 REMARK 465 GLY A 2175 REMARK 465 GLN A 2176 REMARK 465 PHE A 2177 REMARK 465 GLY A 2303 REMARK 465 GLY A 2304 REMARK 465 SER A 2305 REMARK 465 GLY A 2306 REMARK 465 GLY A 2522 REMARK 465 GLY A 2523 REMARK 465 SER A 2524 REMARK 465 GLY A 2525 REMARK 465 GLY A 2526 REMARK 465 PHE A 2588 REMARK 465 ASP A 2589 REMARK 465 VAL A 2590 REMARK 465 DG F 1 REMARK 465 DC F 2 REMARK 465 DG F 3 REMARK 465 DG F 4 REMARK 465 DC F 5 REMARK 465 C E 1 REMARK 465 G E 2 REMARK 465 U E 3 REMARK 465 C E 11 REMARK 465 A E 12 REMARK 465 G E 13 REMARK 465 C E 14 REMARK 465 C E 15 REMARK 465 G E 16 REMARK 465 C E 17 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A2139 CG CD1 CD2 REMARK 470 GLU A2365 CG CD OE1 OE2 REMARK 470 GLU A2370 CG CD OE1 OE2 REMARK 470 PRO A2371 CG CD REMARK 470 GLU A2372 CG CD OE1 OE2 REMARK 470 VAL A2374 CG1 CG2 REMARK 470 ASP A2376 CG OD1 OD2 REMARK 470 DG F 13 O3' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 DG F 7 C2 A E 10 1.97 REMARK 500 N7 DG F 7 N6 A E 10 2.06 REMARK 500 O6 DG F 7 N1 A E 10 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A2371 N - CA - CB ANGL. DEV. = 7.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A1825 110.75 67.37 REMARK 500 ASP A1829 91.43 -59.20 REMARK 500 ASP A1833 -141.87 -148.48 REMARK 500 GLN A1834 -46.99 -149.41 REMARK 500 PHE A1850 149.37 -175.81 REMARK 500 ASP A1896 53.52 -101.66 REMARK 500 ALA A1904 51.99 -154.56 REMARK 500 TRP A1907 27.90 -152.83 REMARK 500 PRO A1937 71.61 -26.82 REMARK 500 ARG A1953 117.69 -164.57 REMARK 500 SER A1956 178.89 64.19 REMARK 500 ASP A1957 -77.83 60.96 REMARK 500 TYR A1965 -73.17 -67.59 REMARK 500 SER A1977 -60.10 -140.57 REMARK 500 SER A2011 -81.60 -74.75 REMARK 500 LEU A2013 60.51 64.15 REMARK 500 GLU A2024 70.39 57.76 REMARK 500 GLN A2027 -80.55 -158.60 REMARK 500 ILE A2029 171.20 -57.79 REMARK 500 ASN A2068 -7.94 80.19 REMARK 500 VAL A2076 -63.26 -140.36 REMARK 500 LYS A2109 39.16 -98.07 REMARK 500 ALA A2112 -138.26 -99.85 REMARK 500 THR A2115 -100.46 -75.47 REMARK 500 THR A2128 -134.83 -125.88 REMARK 500 SER A2129 -81.27 -85.45 REMARK 500 SER A2130 -60.09 -139.98 REMARK 500 ASP A2132 -56.57 -155.80 REMARK 500 PHE A2138 -65.98 -122.80 REMARK 500 THR A2179 31.35 -141.26 REMARK 500 SER A2180 -145.96 -103.26 REMARK 500 LYS A2181 -129.56 -121.43 REMARK 500 ASP A2182 -69.57 73.51 REMARK 500 VAL A2183 -37.84 80.85 REMARK 500 ASN A2185 53.73 -91.25 REMARK 500 LYS A2188 -101.19 -104.96 REMARK 500 LEU A2190 -78.61 -81.91 REMARK 500 PRO A2192 98.23 -64.61 REMARK 500 LEU A2193 167.76 63.11 REMARK 500 LEU A2196 46.94 -93.44 REMARK 500 VAL A2210 -50.26 -154.84 REMARK 500 GLN A2215 3.64 -64.65 REMARK 500 GLN A2234 -67.27 -109.61 REMARK 500 SER A2235 -160.20 54.91 REMARK 500 GLU A2246 -163.27 59.66 REMARK 500 PRO A2247 85.29 -27.14 REMARK 500 ILE A2258 -127.74 -142.70 REMARK 500 SER A2313 164.75 173.42 REMARK 500 SER A2332 98.10 54.06 REMARK 500 PHE A2359 -37.78 -142.42 REMARK 500 REMARK 500 THIS ENTRY HAS 68 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 2499 LYS A 2500 -139.99 REMARK 500 REMARK 500 REMARK: NULL DBREF 6XBU A 1819 1860 UNP O75417 DPOLQ_HUMAN 1819 1860 DBREF 6XBU A 1896 1917 UNP O75417 DPOLQ_HUMAN 1068 1089 DBREF 6XBU A 1935 2170 UNP O75417 DPOLQ_HUMAN 1935 2145 DBREF 6XBU A 2176 2260 UNP O75417 DPOLQ_HUMAN 2176 2260 DBREF 6XBU A 2307 2512 UNP O75417 DPOLQ_HUMAN 2307 2512 DBREF 6XBU A 2527 2590 UNP O75417 DPOLQ_HUMAN 2527 2590 DBREF 6XBU F 1 13 PDB 6XBU 6XBU 1 13 DBREF 6XBU E 1 17 PDB 6XBU 6XBU 1 17 SEQADV 6XBU GLY A 1861 UNP O75417 LINKER SEQADV 6XBU SER A 1894 UNP O75417 LINKER SEQADV 6XBU GLY A 1895 UNP O75417 LINKER SEQADV 6XBU GLY A 1930 UNP O75417 LINKER SEQADV 6XBU GLY A 1931 UNP O75417 LINKER SEQADV 6XBU SER A 1932 UNP O75417 LINKER SEQADV 6XBU GLY A 1933 UNP O75417 LINKER SEQADV 6XBU GLY A 1934 UNP O75417 LINKER SEQADV 6XBU GLY A 2171 UNP O75417 LINKER SEQADV 6XBU GLY A 2172 UNP O75417 LINKER SEQADV 6XBU SER A 2173 UNP O75417 LINKER SEQADV 6XBU GLY A 2174 UNP O75417 LINKER SEQADV 6XBU GLY A 2175 UNP O75417 LINKER SEQADV 6XBU GLY A 2303 UNP O75417 LINKER SEQADV 6XBU GLY A 2304 UNP O75417 LINKER SEQADV 6XBU SER A 2305 UNP O75417 LINKER SEQADV 6XBU GLY A 2306 UNP O75417 LINKER SEQADV 6XBU ASP A 2378 UNP O75417 LEU 2378 CONFLICT SEQADV 6XBU GLY A 2522 UNP O75417 LINKER SEQADV 6XBU GLY A 2523 UNP O75417 LINKER SEQADV 6XBU SER A 2524 UNP O75417 LINKER SEQADV 6XBU GLY A 2525 UNP O75417 LINKER SEQADV 6XBU GLY A 2526 UNP O75417 LINKER SEQRES 1 A 652 SER SER SER SER GLU SER LEU SER ILE ILE ASP VAL ALA SEQRES 2 A 652 SER ASP GLN ASN LEU PHE GLN THR PHE ILE LYS GLU TRP SEQRES 3 A 652 ARG CYS LYS LYS ARG PHE SER ILE SER LEU ALA CYS GLU SEQRES 4 A 652 LYS ILE ARG GLY SER GLY ASP ASP THR LEU VAL VAL GLY SEQRES 5 A 652 LEU ALA VAL CYS TRP GLY GLY ARG ASP ALA TYR TYR PHE SEQRES 6 A 652 SER LEU GLY GLY SER GLY GLY LEU ASP PRO SER LEU THR SEQRES 7 A 652 LEU LYS ASP ARG MET TRP TYR LEU GLN SER CYS LEU ARG SEQRES 8 A 652 LYS GLU SER ASP LYS GLU CYS SER VAL VAL ILE TYR ASP SEQRES 9 A 652 PHE ILE GLN SER TYR LYS ILE LEU LEU LEU SER CYS GLY SEQRES 10 A 652 ILE SER LEU GLU GLN SER TYR GLU ASP PRO LYS VAL ALA SEQRES 11 A 652 CYS TRP LEU LEU ASP PRO ASP SER GLN GLU PRO THR LEU SEQRES 12 A 652 HIS SER ILE VAL THR SER PHE LEU PRO HIS GLU LEU PRO SEQRES 13 A 652 LEU LEU GLU GLY MET GLU THR SER GLN GLY ILE GLN SER SEQRES 14 A 652 LEU GLY LEU ASN ALA GLY SER GLU HIS SER GLY ARG TYR SEQRES 15 A 652 ARG ALA SER VAL GLU SER ILE LEU ILE PHE ASN SER MET SEQRES 16 A 652 ASN GLN LEU ASN SER LEU LEU GLN LYS GLU ASN LEU GLN SEQRES 17 A 652 ASP VAL PHE ARG LYS VAL GLU MET PRO SER GLN TYR CYS SEQRES 18 A 652 LEU ALA LEU LEU GLU LEU ASN GLY ILE GLY PHE SER THR SEQRES 19 A 652 ALA GLU CYS GLU SER GLN LYS HIS ILE MET GLN ALA LYS SEQRES 20 A 652 LEU ASP ALA ILE GLU THR GLN ALA TYR GLN LEU ALA GLY SEQRES 21 A 652 HIS SER PHE SER PHE THR SER SER ASP ASP ILE ALA GLU SEQRES 22 A 652 VAL LEU PHE LEU GLU LEU LYS LEU PRO PRO GLY GLY SER SEQRES 23 A 652 GLY GLY GLN PHE SER THR SER LYS ASP VAL LEU ASN LYS SEQRES 24 A 652 LEU LYS ALA LEU HIS PRO LEU PRO GLY LEU ILE LEU GLU SEQRES 25 A 652 TRP ARG ARG ILE THR ASN ALA ILE THR LYS VAL VAL PHE SEQRES 26 A 652 PRO LEU GLN ARG GLU LYS CYS LEU ASN PRO PHE LEU GLY SEQRES 27 A 652 MET GLU ARG ILE TYR PRO VAL SER GLN SER HIS THR ALA SEQRES 28 A 652 THR GLY ARG ILE THR PHE THR GLU PRO ASN ILE GLN ASN SEQRES 29 A 652 VAL PRO ARG ASP PHE GLU ILE LYS MET GLY GLY SER GLY SEQRES 30 A 652 GLY MET PRO PHE SER ILE SER MET ARG HIS ALA PHE VAL SEQRES 31 A 652 PRO PHE PRO GLY GLY SER ILE LEU ALA ALA ASP TYR SER SEQRES 32 A 652 GLN LEU GLU LEU ARG ILE LEU ALA HIS LEU SER HIS ASP SEQRES 33 A 652 ARG ARG LEU ILE GLN VAL LEU ASN THR GLY ALA ASP VAL SEQRES 34 A 652 PHE ARG SER ILE ALA ALA GLU TRP LYS MET ILE GLU PRO SEQRES 35 A 652 GLU SER VAL GLY ASP ASP ASP ARG GLN GLN ALA LYS GLN SEQRES 36 A 652 ILE CYS TYR GLY ILE ILE TYR GLY MET GLY ALA LYS SER SEQRES 37 A 652 LEU GLY GLU GLN MET GLY ILE LYS GLU ASN ASP ALA ALA SEQRES 38 A 652 CYS TYR ILE ASP SER PHE LYS SER ARG TYR THR GLY ILE SEQRES 39 A 652 ASN GLN PHE MET THR GLU THR VAL LYS ASN CYS LYS ARG SEQRES 40 A 652 ASP GLY PHE VAL GLN THR ILE LEU GLY ARG ARG ARG TYR SEQRES 41 A 652 LEU PRO GLY ILE LYS ASP ASN ASN PRO TYR ARG LYS ALA SEQRES 42 A 652 HIS ALA GLU ARG GLN ALA ILE ASN THR ILE VAL GLN GLY SEQRES 43 A 652 SER ALA ALA ASP ILE VAL LYS ILE ALA THR VAL ASN ILE SEQRES 44 A 652 GLN LYS GLN LEU GLU THR PHE HIS SER THR PHE LYS SER SEQRES 45 A 652 HIS GLY HIS ARG GLU GLY MET LEU GLN SER ASP GLY GLY SEQRES 46 A 652 SER GLY GLY CYS PRO ILE ARG GLY GLY PHE PHE ILE LEU SEQRES 47 A 652 GLN LEU HIS ASP GLU LEU LEU TYR GLU VAL ALA GLU GLU SEQRES 48 A 652 ASP VAL VAL GLN VAL ALA GLN ILE VAL LYS ASN GLU MET SEQRES 49 A 652 GLU SER ALA VAL LYS LEU SER VAL LYS LEU LYS VAL LYS SEQRES 50 A 652 VAL LYS ILE GLY ALA SER TRP GLY GLU LEU LYS ASP PHE SEQRES 51 A 652 ASP VAL SEQRES 1 F 13 DG DC DG DG DC DT DG DT DC DA DT DT DG SEQRES 1 E 17 C G U C C A A U G A C A G SEQRES 2 E 17 C C G C HET DG3 A2601 30 HETNAM DG3 2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE FORMUL 4 DG3 C10 H16 N5 O12 P3 HELIX 1 AA1 ALA A 1831 ASP A 1833 5 3 HELIX 2 AA2 GLN A 1834 ARG A 1845 1 12 HELIX 3 AA3 ASP A 1943 LEU A 1952 1 10 HELIX 4 AA4 ASP A 1966 LEU A 1974 1 9 HELIX 5 AA5 ASP A 1988 ASP A 1997 1 10 HELIX 6 AA6 THR A 2004 PHE A 2012 1 9 HELIX 7 AA7 GLU A 2016 GLU A 2021 5 6 HELIX 8 AA8 SER A 2041 GLU A 2067 1 27 HELIX 9 AA9 ASN A 2068 VAL A 2076 1 9 HELIX 10 AB1 VAL A 2076 GLY A 2091 1 16 HELIX 11 AB2 THR A 2096 LYS A 2109 1 14 HELIX 12 AB3 LEU A 2196 ALA A 2206 1 11 HELIX 13 AB4 ASN A 2248 VAL A 2252 5 5 HELIX 14 AB5 SER A 2313 ALA A 2317 5 5 HELIX 15 AB6 GLN A 2333 SER A 2343 1 11 HELIX 16 AB7 ASP A 2345 THR A 2354 1 10 HELIX 17 AB8 PHE A 2359 TRP A 2366 1 8 HELIX 18 AB9 ASP A 2378 GLY A 2392 1 15 HELIX 19 AC1 GLY A 2394 GLY A 2403 1 10 HELIX 20 AC2 LYS A 2405 SER A 2418 1 14 HELIX 21 AC3 THR A 2421 GLY A 2438 1 18 HELIX 22 AC4 PRO A 2451 ASP A 2455 5 5 HELIX 23 AC5 ASN A 2457 GLY A 2475 1 19 HELIX 24 AC6 GLY A 2475 GLU A 2493 1 19 HELIX 25 AC7 HIS A 2502 GLY A 2507 1 6 HELIX 26 AC8 ASP A 2550 GLU A 2563 1 14 SHEET 1 AA1 3 SER A1826 ASP A1829 0 SHEET 2 AA1 3 ASP A1911 TYR A1914 1 O ALA A1912 N SER A1826 SHEET 3 AA1 3 VAL A1905 CYS A1906 -1 N VAL A1905 O TYR A1913 SHEET 1 AA2 3 ARG A1849 SER A1851 0 SHEET 2 AA2 3 SER A1961 VAL A1963 1 O SER A1961 N PHE A1850 SHEET 3 AA2 3 SER A1985 TYR A1986 1 O SER A1985 N VAL A1962 SHEET 1 AA3 2 ALA A1855 LYS A1858 0 SHEET 2 AA3 2 THR A1898 GLY A1902 -1 O GLY A1902 N ALA A1855 SHEET 1 AA4 3 ILE A2092 GLY A2093 0 SHEET 2 AA4 3 GLU A2227 ILE A2229 -1 O ILE A2229 N ILE A2092 SHEET 3 AA4 3 CYS A2219 LEU A2220 -1 N CYS A2219 O ARG A2228 SHEET 1 AA5 2 PHE A2256 GLU A2257 0 SHEET 2 AA5 2 SER A2311 ILE A2312 -1 O ILE A2312 N PHE A2256 SHEET 1 AA6 4 GLY A2532 LEU A2538 0 SHEET 2 AA6 4 GLU A2541 ALA A2547 -1 O GLU A2541 N LEU A2538 SHEET 3 AA6 4 GLY A2324 ASP A2330 -1 N LEU A2327 O TYR A2544 SHEET 4 AA6 4 LYS A2575 GLY A2579 -1 O LYS A2577 N ALA A2328 SHEET 1 AA7 2 PHE A2439 GLN A2441 0 SHEET 2 AA7 2 ARG A2447 TYR A2449 -1 O ARG A2448 N VAL A2440 CRYST1 99.520 99.520 193.150 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010048 0.005801 0.000000 0.00000 SCALE2 0.000000 0.011603 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005177 0.00000