HEADER VIRAL PROTEIN/IMMUNE SYSTEM 08-JUN-20 6XCJ TITLE CRYSTAL STRUCTURE OF DH650 FAB FROM A RHESUS MACAQUE IN COMPLEX WITH TITLE 2 HIV-1 GP120 CORE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN GP120; COMPND 3 CHAIN: G; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DH650 FAB HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DH650 FAB LIGHT CHAIN; COMPND 11 CHAIN: L; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK 293S; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 9 ORGANISM_TAXID: 9544; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 MOL_ID: 3; SOURCE 13 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 14 ORGANISM_TAXID: 9544; SOURCE 15 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS HIV, FAB, ANTIBODY, NEUTRALIZING, VIRAL PROTEIN, VIRAL PROTEIN-IMMUNE KEYWDS 2 SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.D.RAYMOND,H.CHUG,S.C.HARRISON REVDAT 3 18-OCT-23 6XCJ 1 REMARK REVDAT 2 20-JAN-21 6XCJ 1 JRNL REVDAT 1 02-DEC-20 6XCJ 0 JRNL AUTH R.S.ROARK,H.LI,W.B.WILLIAMS,H.CHUG,R.D.MASON,J.GORMAN, JRNL AUTH 2 S.WANG,F.H.LEE,J.RANDO,M.BONSIGNORI,K.K.HWANG,K.O.SAUNDERS, JRNL AUTH 3 K.WIEHE,M.A.MOODY,P.T.HRABER,K.WAGH,E.E.GIORGI,R.M.RUSSELL, JRNL AUTH 4 F.BIBOLLET-RUCHE,W.LIU,J.CONNELL,A.G.SMITH,J.DEVOTO, JRNL AUTH 5 A.I.MURPHY,J.SMITH,W.DING,C.ZHAO,N.CHOHAN,M.OKUMURA, JRNL AUTH 6 C.ROSARIO,Y.DING,E.LINDEMUTH,A.M.BAUER,K.J.BAR,D.AMBROZAK, JRNL AUTH 7 C.W.CHAO,G.Y.CHUANG,H.GENG,B.C.LIN,M.K.LOUDER,R.NGUYEN, JRNL AUTH 8 B.ZHANG,M.G.LEWIS,D.D.RAYMOND,N.A.DORIA-ROSE,C.A.SCHRAMM, JRNL AUTH 9 D.C.DOUEK,M.ROEDERER,T.B.KEPLER,G.KELSOE,J.R.MASCOLA, JRNL AUTH10 P.D.KWONG,B.T.KORBER,S.C.HARRISON,B.F.HAYNES,B.H.HAHN, JRNL AUTH11 G.M.SHAW JRNL TITL RECAPITULATION OF HIV-1 ENV-ANTIBODY COEVOLUTION IN MACAQUES JRNL TITL 2 LEADING TO NEUTRALIZATION BREADTH. JRNL REF SCIENCE V. 371 2021 JRNL REFN ESSN 1095-9203 JRNL PMID 33214287 JRNL DOI 10.1126/SCIENCE.ABD2638 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 3 NUMBER OF REFLECTIONS : 20060 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1009 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 26.38 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3292 REMARK 3 BIN FREE R VALUE : 0.4196 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 14 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5565 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 126 REMARK 3 SOLVENT ATOMS : 21 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.82190 REMARK 3 B22 (A**2) : 0.87410 REMARK 3 B33 (A**2) : -1.69600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.430 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.437 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.904 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.844 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 11408 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 20583 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 3451 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1785 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5824 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 805 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7793 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.02 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.96 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.57 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XCJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000249929. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999919 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23016 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 49.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4LST REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8K, 100MM TRIS PH 8, 500MM REMARK 280 NACL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 69.26000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.05000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 69.26000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 61.05000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL G 45 REMARK 465 TRP G 46 REMARK 465 LYS G 47 REMARK 465 GLU G 48 REMARK 465 ALA G 49 REMARK 465 LYS G 50 REMARK 465 THR G 51 REMARK 465 SER G 56A REMARK 465 ASP G 56B REMARK 465 ALA G 56C REMARK 465 LYS G 56D REMARK 465 ALA G 56E REMARK 465 TYR G 56F REMARK 465 GLU G 56G REMARK 465 LYS G 56H REMARK 465 GLU G 56I REMARK 465 VAL G 56J REMARK 465 HIS G 56K REMARK 465 ASN G 56L REMARK 465 VAL G 56M REMARK 465 TRP G 56N REMARK 465 ALA G 56O REMARK 465 THR G 56P REMARK 465 HIS G 56Q REMARK 465 ALA G 56R REMARK 465 CYS G 56S REMARK 465 VAL G 56T REMARK 465 PRO G 56U REMARK 465 THR G 56V REMARK 465 ASP G 56W REMARK 465 PRO G 56X REMARK 465 ASN G 56Y REMARK 465 THR G 202 REMARK 465 GLN G 203 REMARK 465 ALA G 204 REMARK 465 CYS G 205 REMARK 465 PRO G 206 REMARK 465 GLY G 316 REMARK 465 ASN G 317 REMARK 465 GLY G 318 REMARK 465 GLY G 319 REMARK 465 SER G 320 REMARK 465 GLY G 321 REMARK 465 SER G 322 REMARK 465 GLY G 323 REMARK 465 GLY G 324 REMARK 465 ASP G 325 REMARK 465 ILE G 326 REMARK 465 ASN G 397 REMARK 465 SER G 398 REMARK 465 THR G 399 REMARK 465 ASP G 400 REMARK 465 MET G 401 REMARK 465 ALA G 402 REMARK 465 ASN G 403 REMARK 465 SER G 404 REMARK 465 THR G 405 REMARK 465 GLU G 406 REMARK 465 THR G 407 REMARK 465 ASN G 408 REMARK 465 ILE G 422 REMARK 465 ILE G 423 REMARK 465 ASN G 424 REMARK 465 MET G 425 REMARK 465 TRP G 426 REMARK 465 GLN G 427 REMARK 465 GLU G 428 REMARK 465 VAL G 429 REMARK 465 GLY G 430 REMARK 465 ARG G 431 REMARK 465 ALA G 432 REMARK 465 MET G 433 REMARK 465 TYR G 434 REMARK 465 ALA G 435 REMARK 465 PRO G 436 REMARK 465 PRO G 437 REMARK 465 ILE G 438 REMARK 465 LYS G 489 REMARK 465 CYS H 224 REMARK 465 ASP H 225 REMARK 465 LYS H 226 REMARK 465 CYS L 220 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP L 34 HH TYR L 38 1.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH11 ARG H 87 HH11 ARG H 87 2555 1.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP G 113 -9.30 -57.64 REMARK 500 GLN G 114 37.20 -82.61 REMARK 500 SER G 115 35.80 -94.69 REMARK 500 LEU G 122 -65.54 -121.03 REMARK 500 GLN G 258 -57.69 77.73 REMARK 500 ARG G 298 -170.00 -117.75 REMARK 500 GLU G 335 -71.19 69.95 REMARK 500 PHE G 353 74.57 -118.21 REMARK 500 PHE G 390 78.91 -113.24 REMARK 500 ASN G 391 60.80 -157.97 REMARK 500 ASN G 460 -81.12 -11.21 REMARK 500 ARG H 67 15.81 -143.49 REMARK 500 GLU H 102 -71.41 75.29 REMARK 500 ARG H 107 64.97 71.29 REMARK 500 THR H 124 96.47 -67.41 REMARK 500 LYS H 137 -73.87 -96.25 REMARK 500 THR H 139 -8.68 72.87 REMARK 500 ASP H 152 70.76 53.97 REMARK 500 PRO H 155 -158.36 -90.15 REMARK 500 LEU L 11 86.96 -155.12 REMARK 500 LEU L 53 -65.57 -105.55 REMARK 500 VAL L 57 -56.15 71.80 REMARK 500 ASP L 74 -71.72 70.78 REMARK 500 ASN L 144 83.65 54.21 REMARK 500 ASN L 158 -19.81 76.78 REMARK 500 LYS L 175 -64.25 -94.32 REMARK 500 ARG L 217 98.30 -60.01 REMARK 500 REMARK 500 REMARK: NULL DBREF 6XCJ G 45 489 PDB 6XCJ 6XCJ 45 489 DBREF 6XCJ H 1 226 PDB 6XCJ 6XCJ 1 226 DBREF 6XCJ L 1 220 PDB 6XCJ 6XCJ 1 220 SEQRES 1 G 357 VAL TRP LYS GLU ALA LYS THR THR LEU PHE CYS ALA SER SEQRES 2 G 357 ASP ALA LYS ALA TYR GLU LYS GLU VAL HIS ASN VAL TRP SEQRES 3 G 357 ALA THR HIS ALA CYS VAL PRO THR ASP PRO ASN PRO GLN SEQRES 4 G 357 GLU MET VAL LEU LYS ASN VAL THR GLU ASN PHE ASN MET SEQRES 5 G 357 TRP LYS ASN ASP MET VAL ASP GLN MET HIS GLU ASP VAL SEQRES 6 G 357 ILE SER LEU TRP ASP GLN SER LEU LYS PRO CYS VAL LYS SEQRES 7 G 357 LEU THR GLY GLY SER VAL ILE THR GLN ALA CYS PRO LYS SEQRES 8 G 357 VAL SER PHE ASP PRO ILE PRO ILE HIS TYR CYS ALA PRO SEQRES 9 G 357 ALA GLY TYR ALA ILE LEU LYS CYS ASN ASN LYS THR PHE SEQRES 10 G 357 THR GLY THR GLY PRO CYS ASN ASN VAL SER THR VAL GLN SEQRES 11 G 357 CYS THR HIS GLY ILE LYS PRO VAL VAL SER THR GLN LEU SEQRES 12 G 357 LEU LEU ASN GLY SER LEU ALA GLU GLY GLU ILE ILE ILE SEQRES 13 G 357 ARG SER GLU ASN ILE THR ASN ASN VAL LYS THR ILE ILE SEQRES 14 G 357 VAL HIS LEU ASN GLU SER VAL LYS ILE GLU CYS THR ARG SEQRES 15 G 357 PRO GLY ASN GLY GLY SER GLY SER GLY GLY ASP ILE ARG SEQRES 16 G 357 GLU ALA TYR CYS ASN ILE ASN GLU SER LYS TRP ASN GLU SEQRES 17 G 357 THR LEU GLN ARG VAL SER LYS LYS LEU LYS GLU TYR PHE SEQRES 18 G 357 PRO HIS LYS ASN ILE THR PHE GLN PRO SER SER GLY GLY SEQRES 19 G 357 ASP LEU GLU ILE THR THR HIS SER PHE ASN CYS GLY GLY SEQRES 20 G 357 GLU PHE PHE TYR CYS ASN THR SER SER LEU PHE ASN ARG SEQRES 21 G 357 THR TYR MET ALA ASN SER THR ASP MET ALA ASN SER THR SEQRES 22 G 357 GLU THR ASN SER THR ARG THR ILE THR ILE HIS CYS ARG SEQRES 23 G 357 ILE LYS GLN ILE ILE ASN MET TRP GLN GLU VAL GLY ARG SEQRES 24 G 357 ALA MET TYR ALA PRO PRO ILE ALA GLY ASN ILE THR CYS SEQRES 25 G 357 ILE SER ILE ILE THR GLY LEU LEU LEU THR ARG ASP GLY SEQRES 26 G 357 GLY LYS ASN ASN THR GLU THR PHE ARG PRO GLY GLY GLY SEQRES 27 G 357 ASN MET LYS ASP ASN TRP ARG SER GLU LEU TYR LYS TYR SEQRES 28 G 357 LYS VAL VAL GLU VAL LYS SEQRES 1 H 226 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 226 PRO GLY ALA SER VAL LYS LEU SER CYS LYS ALA SER GLY SEQRES 3 H 226 TYR GLY PHE THR ILE TYR SER ILE ASN TRP VAL ARG GLN SEQRES 4 H 226 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE ASN SEQRES 5 H 226 PRO ARG ASN GLY ARG ILE GLY TYR ALA GLN LYS PHE GLN SEQRES 6 H 226 ASP ARG VAL THR MET THR ARG ASP THR SER THR SER ILE SEQRES 7 H 226 ALA TYR MET GLU LEU GLY SER LEU ARG TYR GLU ASP THR SEQRES 8 H 226 ALA VAL TYR PHE CYS THR ARG GLY GLN LEU GLU LEU THR SEQRES 9 H 226 ALA SER ARG PHE ASP LYS TRP GLY GLN GLY VAL PRO VAL SEQRES 10 H 226 THR VAL SER GLY ALA SER THR LYS GLY PRO SER VAL PHE SEQRES 11 H 226 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 H 226 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 H 226 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 H 226 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 H 226 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 H 226 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 H 226 LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO SEQRES 18 H 226 LYS SER CYS ASP LYS SEQRES 1 L 220 ASP ILE VAL MET THR GLN SER PRO LEU SER LEU PRO VAL SEQRES 2 L 220 THR PRO GLY GLU PRO ALA ALA ILE SER CYS ARG SER SER SEQRES 3 L 220 GLN SER LEU LEU ASP ARG ALA ASP GLY ASN THR TYR LEU SEQRES 4 L 220 ASP TRP TYR LEU GLN LYS PRO GLY GLN SER PRO GLN LEU SEQRES 5 L 220 LEU ILE TYR GLU VAL SER ASN ARG ALA SER GLY VAL PRO SEQRES 6 L 220 ASP ARG PHE SER GLY SER GLY SER ASP THR ASP PHE THR SEQRES 7 L 220 LEU LYS ILE SER ARG VAL GLU ALA GLU ASP VAL GLY VAL SEQRES 8 L 220 TYR TYR CYS MET GLN GLY LEU GLU PHE PRO TYR SER PHE SEQRES 9 L 220 GLY GLN GLY THR LYS VAL GLU ILE LYS ARG THR VAL ALA SEQRES 10 L 220 ALA PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN SEQRES 11 L 220 LEU LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN SEQRES 12 L 220 ASN PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL SEQRES 13 L 220 ASP ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL SEQRES 14 L 220 THR GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SEQRES 15 L 220 SER THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS SEQRES 16 L 220 LYS VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SEQRES 17 L 220 SER PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS HET NAG G 501 27 HET NAG G 502 27 HET NAG G 503 27 HET NAG G 504 27 HET NAG G 505 27 HET NAG G 506 27 HET NAG G 507 27 HET NAG G 508 27 HET NAG G 509 27 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 9(C8 H15 N O6) FORMUL 13 HOH *21(H2 O) HELIX 1 AA1 ASN G 98 ASP G 113 1 16 HELIX 2 AA2 GLU G 335 PHE G 353 1 19 HELIX 3 AA3 ASP G 367 THR G 372 1 6 HELIX 4 AA4 ASN G 471 TYR G 481 1 11 HELIX 5 AA5 GLY H 28 TYR H 32 5 5 HELIX 6 AA6 PHE H 64 ASP H 66 5 3 HELIX 7 AA7 ARG H 87 THR H 91 5 5 HELIX 8 AA8 LYS H 137 GLY H 141 5 5 HELIX 9 AA9 SER H 164 ALA H 166 5 3 HELIX 10 AB1 SER H 195 LEU H 197 5 3 HELIX 11 AB2 GLU L 85 VAL L 89 5 5 HELIX 12 AB3 SER L 127 SER L 133 1 7 HELIX 13 AB4 LYS L 189 GLU L 193 1 5 SHEET 1 AA1 2 PHE G 54 ALA G 56 0 SHEET 2 AA1 2 HIS G 216 CYS G 218 -1 O CYS G 218 N PHE G 54 SHEET 1 AA2 4 GLU G 83 VAL G 85 0 SHEET 2 AA2 4 VAL G 242 VAL G 245 -1 O THR G 244 N MET G 84 SHEET 3 AA2 4 TYR G 223 CYS G 228 -1 N ILE G 225 O VAL G 245 SHEET 4 AA2 4 TYR G 483 GLU G 487 -1 O VAL G 486 N ALA G 224 SHEET 1 AA3 2 GLU G 91 PHE G 93 0 SHEET 2 AA3 2 GLY G 237 CYS G 239 -1 O GLY G 237 N PHE G 93 SHEET 1 AA4 2 CYS G 119 LYS G 121 0 SHEET 2 AA4 2 GLY G 125 VAL G 127 -1 O SER G 126 N VAL G 120 SHEET 1 AA5 7 LEU G 259 LEU G 261 0 SHEET 2 AA5 7 THR G 443 ARG G 455 -1 O GLY G 450 N LEU G 260 SHEET 3 AA5 7 ILE G 284 THR G 297 -1 N ILE G 284 O LEU G 453 SHEET 4 AA5 7 GLU G 328 ILE G 333 -1 O TYR G 330 N THR G 297 SHEET 5 AA5 7 ILE G 413 LYS G 420 -1 O CYS G 417 N ALA G 329 SHEET 6 AA5 7 PHE G 381 CYS G 384 -1 N PHE G 381 O LYS G 420 SHEET 7 AA5 7 HIS G 373 ASN G 376 -1 N HIS G 373 O CYS G 384 SHEET 1 AA6 6 ILE G 271 ILE G 272 0 SHEET 2 AA6 6 ILE G 284 THR G 297 -1 O HIS G 287 N ILE G 271 SHEET 3 AA6 6 THR G 443 ARG G 455 -1 O LEU G 453 N ILE G 284 SHEET 4 AA6 6 THR G 462 PRO G 467 -1 O ARG G 466 N THR G 454 SHEET 5 AA6 6 ASN G 357 PHE G 360 1 N THR G 359 O GLU G 463 SHEET 6 AA6 6 ARG G 392 TYR G 394 -1 O ARG G 392 N PHE G 360 SHEET 1 AA7 2 GLN H 3 GLN H 6 0 SHEET 2 AA7 2 CYS H 22 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 1 AA8 6 GLU H 10 LYS H 12 0 SHEET 2 AA8 6 VAL H 115 VAL H 119 1 O THR H 118 N LYS H 12 SHEET 3 AA8 6 ALA H 92 GLY H 99 -1 N TYR H 94 O VAL H 115 SHEET 4 AA8 6 SER H 33 GLN H 39 -1 N VAL H 37 O PHE H 95 SHEET 5 AA8 6 GLU H 46 ILE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 AA8 6 ILE H 58 TYR H 60 -1 O GLY H 59 N TRP H 50 SHEET 1 AA9 4 GLU H 10 LYS H 12 0 SHEET 2 AA9 4 VAL H 115 VAL H 119 1 O THR H 118 N LYS H 12 SHEET 3 AA9 4 ALA H 92 GLY H 99 -1 N TYR H 94 O VAL H 115 SHEET 4 AA9 4 LYS H 110 TRP H 111 -1 O LYS H 110 N ARG H 98 SHEET 1 AB1 3 VAL H 18 LEU H 20 0 SHEET 2 AB1 3 ILE H 78 LEU H 83 -1 O MET H 81 N LEU H 20 SHEET 3 AB1 3 VAL H 68 ASP H 73 -1 N THR H 71 O TYR H 80 SHEET 1 AB2 4 SER H 128 LEU H 132 0 SHEET 2 AB2 4 THR H 143 TYR H 153 -1 O LEU H 149 N PHE H 130 SHEET 3 AB2 4 TYR H 184 PRO H 193 -1 O TYR H 184 N TYR H 153 SHEET 4 AB2 4 VAL H 171 THR H 173 -1 N HIS H 172 O VAL H 189 SHEET 1 AB3 4 SER H 128 LEU H 132 0 SHEET 2 AB3 4 THR H 143 TYR H 153 -1 O LEU H 149 N PHE H 130 SHEET 3 AB3 4 TYR H 184 PRO H 193 -1 O TYR H 184 N TYR H 153 SHEET 4 AB3 4 VAL H 177 LEU H 178 -1 N VAL H 177 O SER H 185 SHEET 1 AB4 3 THR H 159 TRP H 162 0 SHEET 2 AB4 3 TYR H 202 HIS H 208 -1 O ASN H 205 N SER H 161 SHEET 3 AB4 3 THR H 213 VAL H 219 -1 O VAL H 215 N VAL H 206 SHEET 1 AB5 4 MET L 4 SER L 7 0 SHEET 2 AB5 4 ALA L 19 SER L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AB5 4 ASP L 76 ILE L 81 -1 O ILE L 81 N ALA L 19 SHEET 4 AB5 4 PHE L 68 SER L 73 -1 N SER L 69 O LYS L 80 SHEET 1 AB6 6 SER L 10 VAL L 13 0 SHEET 2 AB6 6 THR L 108 ILE L 112 1 O GLU L 111 N VAL L 13 SHEET 3 AB6 6 GLY L 90 GLN L 96 -1 N GLY L 90 O VAL L 110 SHEET 4 AB6 6 LEU L 39 GLN L 44 -1 N TYR L 42 O TYR L 93 SHEET 5 AB6 6 GLN L 51 TYR L 55 -1 O LEU L 53 N TRP L 41 SHEET 6 AB6 6 ASN L 59 ARG L 60 -1 O ASN L 59 N TYR L 55 SHEET 1 AB7 4 SER L 120 PHE L 124 0 SHEET 2 AB7 4 THR L 135 PHE L 145 -1 O VAL L 139 N PHE L 124 SHEET 3 AB7 4 TYR L 179 SER L 188 -1 O LEU L 187 N ALA L 136 SHEET 4 AB7 4 SER L 165 VAL L 169 -1 N GLN L 166 O THR L 184 SHEET 1 AB8 4 ALA L 159 LEU L 160 0 SHEET 2 AB8 4 LYS L 151 VAL L 156 -1 N VAL L 156 O ALA L 159 SHEET 3 AB8 4 VAL L 197 THR L 203 -1 O ALA L 199 N LYS L 155 SHEET 4 AB8 4 VAL L 211 ASN L 216 -1 O PHE L 215 N TYR L 198 SSBOND 1 CYS G 218 CYS G 247 1555 1555 2.04 SSBOND 2 CYS G 228 CYS G 239 1555 1555 2.05 SSBOND 3 CYS G 296 CYS G 331 1555 1555 2.04 SSBOND 4 CYS G 377 CYS G 444 1555 1555 2.03 SSBOND 5 CYS G 384 CYS G 417 1555 1555 2.05 SSBOND 6 CYS H 22 CYS H 96 1555 1555 2.03 SSBOND 7 CYS H 148 CYS H 204 1555 1555 2.04 SSBOND 8 CYS L 23 CYS L 94 1555 1555 2.04 SSBOND 9 CYS L 140 CYS L 200 1555 1555 2.05 LINK ND2 ASN G 230 C1 NAG G 508 1555 1555 1.43 LINK ND2 ASN G 241 C1 NAG G 503 1555 1555 1.44 LINK ND2 ASN G 262 C1 NAG G 504 1555 1555 1.43 LINK ND2 ASN G 276 C1 NAG G 505 1555 1555 1.43 LINK ND2 ASN G 289 C1 NAG G 509 1555 1555 1.43 LINK ND2 ASN G 334 C1 NAG G 507 1555 1555 1.43 LINK ND2 ASN G 339 C1 NAG G 506 1555 1555 1.44 LINK ND2 ASN G 385 C1 NAG G 501 1555 1555 1.43 LINK ND2 ASN G 391 C1 NAG G 502 1555 1555 1.43 CISPEP 1 PHE H 154 PRO H 155 0 -3.61 CISPEP 2 GLU H 156 PRO H 157 0 3.91 CISPEP 3 SER L 7 PRO L 8 0 3.23 CISPEP 4 PHE L 100 PRO L 101 0 -7.62 CISPEP 5 TYR L 146 PRO L 147 0 2.85 CRYST1 138.520 122.100 53.400 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007219 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008190 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018727 0.00000