HEADER DE NOVO PROTEIN 12-JUN-20 6XEH TITLE SOLUTION NMR STRUCTURE OF DE NOVO DESIGNED ROSSMANN 2X3 FOLD PROTEIN TITLE 2 R2X3_168, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET TITLE 3 OR386 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DE NOVO DESIGNED OR386; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ROSEMANN 2X3 FOLD NMR, STRUCTURAL GENOMICS, PSI-BIOLOGY, NORTHEAST KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, NESG, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.LIU,G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 15-MAY-24 6XEH 1 REMARK REVDAT 2 14-JUN-23 6XEH 1 REMARK REVDAT 1 05-AUG-20 6XEH 0 JRNL AUTH N.KOGA,R.KOGA,G.LIU,J.CASTELLANOS,G.T.MONTELIONE,D.BAKER JRNL TITL ROLE OF BACKBONE STRAIN IN DE NOVO DESIGN OF COMPLEX JRNL TITL 2 ALPHA/BETA PROTEIN STRUCTURES ACCURATE DE NOVO DESIGN OF JRNL TITL 3 ASYMETRIC ALPHA/BETA PROTEINS WITH TEN OR MORE SECONDARY JRNL TITL 4 STRUCTURE ELEMENTS REQUIRES CONSIDERATION OF BACKBONE STRAIN JRNL TITL 5 DESIGN PRINCIPLE PROPOSED FROM DESIGNED LARGER JRNL TITL 6 ALPHA/BETA-PROTEINS NOT FOLDED AS DESIGNED: CONSISTENCY JRNL TITL 7 BETWEEN LOCAL, NON-LOCAL, AND GLOBAL STRUCTURES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CYANA REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XEH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000250023. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-13C; U-15N] OR386, 90% REMARK 210 H2O/10% D2O; 0.6 MM [U-10% 13C; REMARK 210 U-100% 15N] OR386, 90% H2O/10% REMARK 210 D2O; 0.6 MM [U-10% 13C; U-100% REMARK 210 15N] OR386, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCO; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 SIMUTANEOUS 1H, 15N, 13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ASDP, AUTOASSIGN, XEASY, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 3 95.82 -64.26 REMARK 500 1 LEU A 118 -62.69 -95.50 REMARK 500 1 HIS A 120 113.72 -165.60 REMARK 500 1 HIS A 121 -164.45 -77.28 REMARK 500 2 ASP A 55 96.82 -68.23 REMARK 500 2 SER A 117 175.70 62.08 REMARK 500 2 LEU A 118 -52.84 -122.88 REMARK 500 2 HIS A 123 53.60 -94.00 REMARK 500 3 ASP A 27 93.27 -68.09 REMARK 500 3 HIS A 121 -50.37 -149.87 REMARK 500 4 HIS A 121 89.11 -64.14 REMARK 500 5 ASP A 27 74.61 -100.15 REMARK 500 5 HIS A 122 93.75 -49.38 REMARK 500 6 ASP A 27 92.91 -69.80 REMARK 500 6 LEU A 118 -70.01 -81.15 REMARK 500 6 HIS A 120 55.33 -93.71 REMARK 500 6 HIS A 122 93.75 -67.03 REMARK 500 7 LYS A 3 131.14 173.51 REMARK 500 7 ASP A 27 92.08 -68.21 REMARK 500 7 LEU A 118 -62.31 -130.03 REMARK 500 7 HIS A 121 -68.31 -123.37 REMARK 500 7 HIS A 122 -48.38 -157.50 REMARK 500 7 HIS A 123 -77.76 -137.80 REMARK 500 8 LYS A 3 108.66 -161.61 REMARK 500 8 HIS A 122 86.23 -68.33 REMARK 500 9 HIS A 121 39.92 74.46 REMARK 500 10 LEU A 118 -78.01 -70.54 REMARK 500 10 GLU A 119 124.32 167.03 REMARK 500 10 HIS A 121 88.50 -63.76 REMARK 500 11 LYS A 3 97.58 -65.69 REMARK 500 11 LEU A 118 -50.53 -127.56 REMARK 500 11 HIS A 121 98.98 -66.72 REMARK 500 12 LYS A 3 108.28 -161.80 REMARK 500 12 HIS A 123 86.66 -63.54 REMARK 500 13 GLU A 54 33.04 -146.09 REMARK 500 13 GLU A 119 -161.77 -110.03 REMARK 500 13 HIS A 120 -66.17 71.95 REMARK 500 13 HIS A 124 96.07 -64.90 REMARK 500 14 LYS A 3 111.36 -167.68 REMARK 500 14 GLU A 119 103.64 -59.05 REMARK 500 15 HIS A 121 55.25 -103.75 REMARK 500 16 GLU A 119 98.86 -68.82 REMARK 500 16 HIS A 122 -156.92 -71.79 REMARK 500 16 HIS A 123 90.04 -52.34 REMARK 500 16 HIS A 124 15.28 -142.78 REMARK 500 17 ASP A 33 86.07 -68.63 REMARK 500 17 HIS A 123 101.89 -176.74 REMARK 500 18 ASP A 55 93.35 -69.65 REMARK 500 18 GLU A 119 30.47 -84.52 REMARK 500 19 LYS A 3 89.41 -173.45 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30763 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF DE NOVO DESIGNED ROSSMANN 2X3 FOLD REMARK 900 PROTEIN R2X3_168, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REMARK 900 TARGET OR386 DBREF 6XEH A 1 125 PDB 6XEH 6XEH 1 125 SEQRES 1 A 125 MET GLY LYS VAL VAL PHE LEU SER ASP ASP GLN GLU ILE SEQRES 2 A 125 ILE GLU GLU VAL SER LYS LYS ALA GLU GLU GLU GLY TYR SEQRES 3 A 125 ASP ILE GLN THR SER ASN ASP LYS LYS GLU ILE ILE ASP SEQRES 4 A 125 ARG LEU LYS ARG ARG ASN ILE ASP MET ILE ILE VAL LYS SEQRES 5 A 125 THR GLU ASP LYS GLU SER ILE SER GLU ILE ILE LYS GLN SEQRES 6 A 125 VAL LEU ASP SER GLY ALA LYS VAL LEU ILE LEU SER SER SEQRES 7 A 125 ASP GLU ASN ILE ILE GLU SER ILE ARG LYS GLN TYR PRO SEQRES 8 A 125 LYS VAL GLU THR ARG ARG ALA GLN ASP LYS GLU GLU VAL SEQRES 9 A 125 LYS ASP ALA VAL GLU GLU PHE LEU LYS GLU GLY GLY SER SEQRES 10 A 125 LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 AA1 ASP A 10 GLY A 25 1 16 HELIX 2 AA2 ASP A 33 ARG A 43 1 11 HELIX 3 AA3 ASP A 55 GLY A 70 1 16 HELIX 4 AA4 ASP A 79 TYR A 90 1 12 HELIX 5 AA5 ASP A 100 GLU A 114 1 15 SHEET 1 AA1 5 GLN A 29 SER A 31 0 SHEET 2 AA1 5 VAL A 4 SER A 8 1 N PHE A 6 O GLN A 29 SHEET 3 AA1 5 MET A 48 LYS A 52 1 O LYS A 52 N LEU A 7 SHEET 4 AA1 5 LYS A 72 SER A 77 1 O LEU A 76 N VAL A 51 SHEET 5 AA1 5 GLU A 94 ARG A 97 1 O GLU A 94 N VAL A 73 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1