HEADER HYDROLASE 15-JUN-20 6XFO TITLE ORTHORHOMBIC CRYSTAL FORM OF STRIGA HERMONTHICA DWARF14 (SHD14) COMPND MOL_ID: 1; COMPND 2 MOLECULE: D14; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STRIGA HERMONTHICA; SOURCE 3 ORGANISM_COMMON: PURPLE WITCHWEED; SOURCE 4 ORGANISM_TAXID: 68872; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA GAMI2 KEYWDS STRIGOLACTONE RECEPTOR, ALPHA/BETA HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.HAMIAUX,K.C.SNOWDEN REVDAT 2 18-OCT-23 6XFO 1 LINK REVDAT 1 24-JUN-20 6XFO 0 JRNL AUTH C.HAMIAUX,Y.ZHANG,K.C.SNOWDEN,H.J.BOUWMEESTER JRNL TITL TO BE PUBLISHED JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 68492 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3564 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.58 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5005 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 270 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4104 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 434 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.34000 REMARK 3 B22 (A**2) : -0.39000 REMARK 3 B33 (A**2) : 0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.779 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4230 ; 0.017 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4010 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5761 ; 2.074 ; 1.631 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9217 ; 1.607 ; 1.570 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 540 ; 6.465 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 228 ;27.222 ;20.088 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 676 ;12.509 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;15.549 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 540 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4809 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 966 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 266 REMARK 3 ORIGIN FOR THE GROUP (A): 30.3780 26.8200 101.4160 REMARK 3 T TENSOR REMARK 3 T11: 0.0432 T22: 0.0101 REMARK 3 T33: 0.0668 T12: 0.0048 REMARK 3 T13: -0.0381 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 2.0095 L22: 2.4325 REMARK 3 L33: 0.5993 L12: -0.9819 REMARK 3 L13: -0.1387 L23: -0.1580 REMARK 3 S TENSOR REMARK 3 S11: 0.1381 S12: -0.0526 S13: -0.0691 REMARK 3 S21: -0.1541 S22: -0.0957 S23: 0.1418 REMARK 3 S31: 0.0448 S32: 0.0429 S33: -0.0424 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 266 REMARK 3 ORIGIN FOR THE GROUP (A): 30.5260 26.0870 58.3080 REMARK 3 T TENSOR REMARK 3 T11: 0.0219 T22: 0.0106 REMARK 3 T33: 0.0828 T12: 0.0067 REMARK 3 T13: -0.0040 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.9249 L22: 4.1254 REMARK 3 L33: 1.0538 L12: -1.1888 REMARK 3 L13: -0.2176 L23: -0.4696 REMARK 3 S TENSOR REMARK 3 S11: 0.0489 S12: -0.0751 S13: 0.1562 REMARK 3 S21: 0.0059 S22: -0.0431 S23: -0.4191 REMARK 3 S31: -0.0080 S32: 0.0466 S33: -0.0059 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6XFO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000249998. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.6 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72148 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 46.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.20 REMARK 200 R MERGE FOR SHELL (I) : 1.03900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 4DNP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS/ACETATE PH 8.5, 0.2 M REMARK 280 MGCL2, 20% PEG 8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.11500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.31000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.66500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.31000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.11500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.66500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 401 O HOH A 439 2.00 REMARK 500 O HOH A 401 O HOH A 437 2.04 REMARK 500 O HOH A 419 O HOH A 554 2.05 REMARK 500 O GLY B 233 O ACT B 301 2.06 REMARK 500 OH TYR B 40 OD1 ASN B 254 2.08 REMARK 500 O HOH A 618 O HOH A 625 2.13 REMARK 500 OH TYR A 40 OD1 ASN A 254 2.13 REMARK 500 O GLY B 233 C ACT B 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP B 61 O ACT B 301 3656 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 61 CG ASP A 61 OD2 -0.146 REMARK 500 HIS A 95 CE1 HIS A 95 NE2 -0.076 REMARK 500 MET A 192 CB MET A 192 CG 0.311 REMARK 500 GLU B 169 CD GLU B 169 OE1 0.067 REMARK 500 HIS B 246 CE1 HIS B 246 NE2 -0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 43 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 PHE A 74 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 108 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 176 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG B 12 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG B 176 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG B 235 CG - CD - NE ANGL. DEV. = -18.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 68 59.10 -92.83 REMARK 500 SER A 96 -118.00 54.29 REMARK 500 LYS A 129 107.30 -49.68 REMARK 500 ASN A 150 80.84 -166.16 REMARK 500 ASP A 242 42.03 -97.35 REMARK 500 PRO A 265 -168.94 -75.45 REMARK 500 ASP B 44 18.34 -144.45 REMARK 500 SER B 96 -113.31 50.39 REMARK 500 ARG B 124 129.22 -172.14 REMARK 500 LYS B 129 109.85 -37.60 REMARK 500 ASN B 150 79.55 -161.22 REMARK 500 ASP B 242 43.74 -96.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 61 OD2 REMARK 620 2 GLY A 233 O 35.7 REMARK 620 3 HOH A 407 O 36.0 0.5 REMARK 620 4 HOH A 442 O 34.0 3.0 3.5 REMARK 620 5 HOH A 459 O 32.8 2.9 3.2 2.8 REMARK 620 6 HOH A 545 O 33.9 3.7 4.2 0.7 3.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 301 DBREF1 6XFO A 1 266 UNP A0A2U8XQ45_STRHE DBREF2 6XFO A A0A2U8XQ45 1 266 DBREF1 6XFO B 1 266 UNP A0A2U8XQ45_STRHE DBREF2 6XFO B A0A2U8XQ45 1 266 SEQRES 1 A 266 MET VAL GLN SER LEU LEU GLU ALA LEU ASN VAL ARG VAL SEQRES 2 A 266 VAL GLY SER GLY GLU LYS VAL LEU VAL LEU ALA HIS GLY SEQRES 3 A 266 VAL GLY THR ASP GLN SER ALA TRP GLN ARG ILE LEU PRO SEQRES 4 A 266 TYR PHE VAL ARG ASP HIS ARG VAL VAL LEU TYR ASP LEU SEQRES 5 A 266 VAL CYS ALA GLY SER VAL ASN PRO ASP TYR PHE ASP PHE SEQRES 6 A 266 ARG ARG TYR THR SER LEU ASP ALA PHE VAL ASP ASP LEU SEQRES 7 A 266 LEU ALA ILE LEU ASP ALA LEU ARG LEU GLY ARG CYS THR SEQRES 8 A 266 TYR VAL GLY HIS SER VAL SER ALA SER ILE GLY ILE LEU SEQRES 9 A 266 ALA SER ILE ARG ARG PRO ASP LEU PHE ALA LYS LEU ILE SEQRES 10 A 266 LEU ILE GLY ALA SER PRO ARG PHE LEU ASN ASP LYS ASN SEQRES 11 A 266 TYR HIS GLY GLY PHE ALA ASP GLY GLU ILE ASP THR VAL SEQRES 12 A 266 PHE ALA ALA MET GLU ALA ASN TYR ALA ALA TRP VAL SER SEQRES 13 A 266 GLY PHE ALA PRO LEU ALA VAL GLY ALA ASP VAL PRO GLU SEQRES 14 A 266 ALA VAL ARG GLU PHE SER ARG THR LEU PHE ASN MET ARG SEQRES 15 A 266 PRO ASP ILE THR LEU PHE VAL SER ARG MET VAL PHE ASN SEQRES 16 A 266 SER ASP LEU ARG GLY VAL LEU GLY LEU VAL THR VAL PRO SEQRES 17 A 266 CYS SER VAL LEU GLN THR SER LYS ASP HIS SER VAL PRO SEQRES 18 A 266 GLU SER MET ALA ALA TYR LEU LYS GLU ASN LEU GLY GLY SEQRES 19 A 266 ARG THR THR VAL HIS MET LEU ASP ILE GLU GLY HIS LEU SEQRES 20 A 266 PRO HIS LEU SER ALA PRO ASN LEU LEU ALA GLN GLU LEU SEQRES 21 A 266 ARG ARG ALA LEU PRO ARG SEQRES 1 B 266 MET VAL GLN SER LEU LEU GLU ALA LEU ASN VAL ARG VAL SEQRES 2 B 266 VAL GLY SER GLY GLU LYS VAL LEU VAL LEU ALA HIS GLY SEQRES 3 B 266 VAL GLY THR ASP GLN SER ALA TRP GLN ARG ILE LEU PRO SEQRES 4 B 266 TYR PHE VAL ARG ASP HIS ARG VAL VAL LEU TYR ASP LEU SEQRES 5 B 266 VAL CYS ALA GLY SER VAL ASN PRO ASP TYR PHE ASP PHE SEQRES 6 B 266 ARG ARG TYR THR SER LEU ASP ALA PHE VAL ASP ASP LEU SEQRES 7 B 266 LEU ALA ILE LEU ASP ALA LEU ARG LEU GLY ARG CYS THR SEQRES 8 B 266 TYR VAL GLY HIS SER VAL SER ALA SER ILE GLY ILE LEU SEQRES 9 B 266 ALA SER ILE ARG ARG PRO ASP LEU PHE ALA LYS LEU ILE SEQRES 10 B 266 LEU ILE GLY ALA SER PRO ARG PHE LEU ASN ASP LYS ASN SEQRES 11 B 266 TYR HIS GLY GLY PHE ALA ASP GLY GLU ILE ASP THR VAL SEQRES 12 B 266 PHE ALA ALA MET GLU ALA ASN TYR ALA ALA TRP VAL SER SEQRES 13 B 266 GLY PHE ALA PRO LEU ALA VAL GLY ALA ASP VAL PRO GLU SEQRES 14 B 266 ALA VAL ARG GLU PHE SER ARG THR LEU PHE ASN MET ARG SEQRES 15 B 266 PRO ASP ILE THR LEU PHE VAL SER ARG MET VAL PHE ASN SEQRES 16 B 266 SER ASP LEU ARG GLY VAL LEU GLY LEU VAL THR VAL PRO SEQRES 17 B 266 CYS SER VAL LEU GLN THR SER LYS ASP HIS SER VAL PRO SEQRES 18 B 266 GLU SER MET ALA ALA TYR LEU LYS GLU ASN LEU GLY GLY SEQRES 19 B 266 ARG THR THR VAL HIS MET LEU ASP ILE GLU GLY HIS LEU SEQRES 20 B 266 PRO HIS LEU SER ALA PRO ASN LEU LEU ALA GLN GLU LEU SEQRES 21 B 266 ARG ARG ALA LEU PRO ARG HET MG A 301 1 HET ACT B 301 4 HETNAM MG MAGNESIUM ION HETNAM ACT ACETATE ION FORMUL 3 MG MG 2+ FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 HOH *434(H2 O) HELIX 1 AA1 SER A 4 LEU A 9 1 6 HELIX 2 AA2 ASP A 30 GLN A 35 5 6 HELIX 3 AA3 ILE A 37 PHE A 41 5 5 HELIX 4 AA4 ASN A 59 PHE A 63 5 5 HELIX 5 AA5 SER A 70 ARG A 86 1 17 HELIX 6 AA6 SER A 96 ARG A 109 1 14 HELIX 7 AA7 ILE A 140 ASN A 150 1 11 HELIX 8 AA8 ASN A 150 GLY A 164 1 15 HELIX 9 AA9 VAL A 167 ASN A 180 1 14 HELIX 10 AB1 ARG A 182 ASN A 195 1 14 HELIX 11 AB2 LEU A 198 VAL A 205 5 8 HELIX 12 AB3 SER A 223 LEU A 232 1 10 HELIX 13 AB4 LEU A 247 ALA A 252 1 6 HELIX 14 AB5 ALA A 252 ALA A 263 1 12 HELIX 15 AB6 VAL B 2 LEU B 9 1 8 HELIX 16 AB7 ASP B 30 GLN B 35 5 6 HELIX 17 AB8 ILE B 37 PHE B 41 5 5 HELIX 18 AB9 ASN B 59 PHE B 63 5 5 HELIX 19 AC1 SER B 70 ARG B 86 1 17 HELIX 20 AC2 SER B 96 ARG B 109 1 14 HELIX 21 AC3 ILE B 140 ASN B 150 1 11 HELIX 22 AC4 ASN B 150 GLY B 164 1 15 HELIX 23 AC5 VAL B 167 ASN B 180 1 14 HELIX 24 AC6 ARG B 182 ASN B 195 1 14 HELIX 25 AC7 LEU B 198 VAL B 205 5 8 HELIX 26 AC8 SER B 223 LEU B 232 1 10 HELIX 27 AC9 LEU B 247 ALA B 252 1 6 HELIX 28 AD1 ALA B 252 LEU B 264 1 13 SHEET 1 AA1 7 ARG A 12 VAL A 14 0 SHEET 2 AA1 7 HIS A 45 LEU A 49 -1 O VAL A 47 N VAL A 14 SHEET 3 AA1 7 LYS A 19 ALA A 24 1 N LEU A 21 O VAL A 48 SHEET 4 AA1 7 CYS A 90 HIS A 95 1 O VAL A 93 N VAL A 22 SHEET 5 AA1 7 PHE A 113 ILE A 119 1 O ILE A 117 N TYR A 92 SHEET 6 AA1 7 CYS A 209 SER A 215 1 O SER A 210 N LEU A 118 SHEET 7 AA1 7 THR A 236 GLU A 244 1 O THR A 237 N VAL A 211 SHEET 1 AA2 7 ARG B 12 GLY B 15 0 SHEET 2 AA2 7 HIS B 45 LEU B 49 -1 O VAL B 47 N VAL B 14 SHEET 3 AA2 7 LYS B 19 ALA B 24 1 N LEU B 21 O VAL B 48 SHEET 4 AA2 7 CYS B 90 HIS B 95 1 O VAL B 93 N VAL B 22 SHEET 5 AA2 7 PHE B 113 ILE B 119 1 O ILE B 119 N GLY B 94 SHEET 6 AA2 7 CYS B 209 SER B 215 1 O SER B 210 N LEU B 118 SHEET 7 AA2 7 THR B 236 GLU B 244 1 O THR B 237 N VAL B 211 LINK OD2 ASP A 61 MG MG A 301 1555 3657 2.22 LINK O GLY A 233 MG MG A 301 1555 1555 2.06 LINK MG MG A 301 O HOH A 407 1555 1555 2.02 LINK MG MG A 301 O HOH A 442 1555 3647 2.18 LINK MG MG A 301 O HOH A 459 1555 1555 1.98 LINK MG MG A 301 O HOH A 545 1555 1555 1.73 SITE 1 AC1 6 ASP A 61 GLY A 233 HOH A 407 HOH A 442 SITE 2 AC1 6 HOH A 459 HOH A 545 SITE 1 AC2 4 ASP B 61 GLY B 233 HOH B 468 HOH B 495 CRYST1 72.230 83.330 86.620 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013845 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012000 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011545 0.00000