HEADER HYDROLASE 24-JUN-20 6XJN TITLE HUMAN ATLASTIN-1 (RESIDUES 1-439) BOUND TO GDP-MG2+ EXHIBITS AN TITLE 2 ORDERED AMINO TERMINUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATLASTIN-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BRAIN-SPECIFIC GTP-BINDING PROTEIN,GTP-BINDING PROTEIN 3, COMPND 5 HGBP3,GUANINE NUCLEOTIDE-BINDING PROTEIN 3,SPASTIC PARAPLEGIA 3 COMPND 6 PROTEIN A; COMPND 7 EC: 3.6.5.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ATL1, GBP3, SPG3A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GTPASE, FUSOGEN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.P.O'DONNELL,H.SONDERMANN REVDAT 3 22-MAY-24 6XJN 1 REMARK REVDAT 2 10-NOV-21 6XJN 1 JRNL REVDAT 1 30-JUN-21 6XJN 0 JRNL AUTH C.M.KELLY,L.J.BYRNES,N.NEELA,H.SONDERMANN,J.P.O'DONNELL JRNL TITL THE HYPERVARIABLE REGION OF ATLASTIN-1 IS A SITE FOR JRNL TITL 2 INTRINSIC AND EXTRINSIC REGULATION. JRNL REF J.CELL BIOL. V. 220 2021 JRNL REFN ESSN 1540-8140 JRNL PMID 34546351 JRNL DOI 10.1083/JCB.202104128 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 39256 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1520 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.8600 - 4.8900 1.00 3632 146 0.1810 0.2281 REMARK 3 2 4.8900 - 3.8800 1.00 3464 141 0.1577 0.1769 REMARK 3 3 3.8800 - 3.3900 1.00 3444 139 0.1840 0.2024 REMARK 3 4 3.3900 - 3.0800 1.00 3454 138 0.2334 0.2840 REMARK 3 5 3.0800 - 2.8600 1.00 3411 138 0.2429 0.2893 REMARK 3 6 2.8600 - 2.6900 1.00 3406 137 0.2484 0.3123 REMARK 3 7 2.6900 - 2.5600 1.00 3383 137 0.2424 0.2631 REMARK 3 8 2.5600 - 2.4500 1.00 3420 137 0.2515 0.3439 REMARK 3 9 2.4500 - 2.3500 1.00 3361 136 0.2439 0.2971 REMARK 3 10 2.3500 - 2.2700 1.00 3391 137 0.2422 0.2998 REMARK 3 11 2.2700 - 2.2000 1.00 3370 134 0.2438 0.2867 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.244 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.892 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3384 REMARK 3 ANGLE : 0.898 4586 REMARK 3 CHIRALITY : 0.053 509 REMARK 3 PLANARITY : 0.006 583 REMARK 3 DIHEDRAL : 15.535 453 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 19:35) REMARK 3 ORIGIN FOR THE GROUP (A): 53.3986 41.9598 77.2758 REMARK 3 T TENSOR REMARK 3 T11: 0.5818 T22: 1.1031 REMARK 3 T33: 0.7424 T12: -0.1458 REMARK 3 T13: 0.0315 T23: -0.2412 REMARK 3 L TENSOR REMARK 3 L11: 3.0410 L22: 4.6918 REMARK 3 L33: 1.6033 L12: -3.5009 REMARK 3 L13: 0.7989 L23: -0.5443 REMARK 3 S TENSOR REMARK 3 S11: 0.1371 S12: 0.2606 S13: -0.3439 REMARK 3 S21: 0.1652 S22: -0.0812 S23: -0.7355 REMARK 3 S31: 0.4901 S32: 0.3099 S33: 0.0370 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 36:334) REMARK 3 ORIGIN FOR THE GROUP (A): 27.0555 51.2550 79.2411 REMARK 3 T TENSOR REMARK 3 T11: 0.3987 T22: 0.3093 REMARK 3 T33: 0.2734 T12: -0.0140 REMARK 3 T13: 0.0189 T23: -0.0559 REMARK 3 L TENSOR REMARK 3 L11: 2.3393 L22: 2.9100 REMARK 3 L33: 4.5758 L12: 0.0752 REMARK 3 L13: 0.3658 L23: 2.1273 REMARK 3 S TENSOR REMARK 3 S11: -0.0725 S12: 0.2089 S13: -0.1368 REMARK 3 S21: -0.2267 S22: -0.0637 S23: 0.0577 REMARK 3 S31: -0.0543 S32: 0.0776 S33: 0.1134 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 335:439) REMARK 3 ORIGIN FOR THE GROUP (A): 27.0073 27.2927 56.5891 REMARK 3 T TENSOR REMARK 3 T11: 0.7072 T22: 0.4775 REMARK 3 T33: 0.5222 T12: -0.0686 REMARK 3 T13: 0.0462 T23: -0.2323 REMARK 3 L TENSOR REMARK 3 L11: 3.2832 L22: 4.8550 REMARK 3 L33: 2.8685 L12: -2.8831 REMARK 3 L13: -1.9776 L23: 2.3865 REMARK 3 S TENSOR REMARK 3 S11: -0.2956 S12: 0.1156 S13: -0.5068 REMARK 3 S21: 0.0696 S22: -0.1880 S23: 0.5472 REMARK 3 S31: 0.4025 S32: -0.1437 S33: 0.4440 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XJN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000250075. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9767 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39278 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.73500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5 M SODIUM FORMATE PH 7, CRYSTALS REMARK 280 TRANSFERRED TO CRYO SOLUTION SUPPLEMENTED WITH 25% GLYCEROL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.08500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.43000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 101.09500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.08500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.43000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 101.09500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.08500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.43000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 101.09500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.08500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 69.43000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 101.09500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 ASN A 4 REMARK 465 ARG A 5 REMARK 465 ARG A 6 REMARK 465 ASP A 7 REMARK 465 ARG A 8 REMARK 465 ASN A 9 REMARK 465 SER A 10 REMARK 465 TRP A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 PHE A 14 REMARK 465 SER A 15 REMARK 465 GLU A 16 REMARK 465 LYS A 17 REMARK 465 GLY A 114 REMARK 465 GLY A 115 REMARK 465 SER A 116 REMARK 465 GLU A 117 REMARK 465 ARG A 118 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 26 CG CD OE1 OE2 REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 ARG A 77 NE CZ NH1 NH2 REMARK 470 GLU A 95 CG CD OE1 OE2 REMARK 470 THR A 108 OG1 CG2 REMARK 470 ARG A 113 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 119 CG CD OE1 OE2 REMARK 470 ASP A 152 CG OD1 OD2 REMARK 470 GLN A 154 CG CD OE1 NE2 REMARK 470 GLN A 188 CG CD OE1 NE2 REMARK 470 ASN A 245 CG OD1 ND2 REMARK 470 HIS A 247 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 248 CG CD OE1 OE2 REMARK 470 GLU A 249 CG CD OE1 OE2 REMARK 470 GLN A 251 CG CD OE1 NE2 REMARK 470 ASN A 252 CG OD1 ND2 REMARK 470 ASP A 283 CG OD1 OD2 REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 LYS A 390 CG CD CE NZ REMARK 470 LYS A 406 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 263 O HOH A 601 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 23 -20.62 63.03 REMARK 500 ASP A 98 41.36 -103.01 REMARK 500 LEU A 107 86.91 -68.31 REMARK 500 SER A 155 -10.03 -153.69 REMARK 500 GLN A 180 -29.83 76.84 REMARK 500 THR A 194 -71.92 -58.07 REMARK 500 GLN A 210 -92.82 -94.84 REMARK 500 HIS A 247 -138.89 44.02 REMARK 500 ASN A 281 77.62 48.96 REMARK 500 ASP A 283 72.69 46.04 REMARK 500 CYS A 375 14.31 -145.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 146 OD2 REMARK 620 2 GDP A 501 O3B 154.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502 DBREF 6XJN A 1 439 UNP Q8WXF7 ATLA1_HUMAN 1 439 SEQRES 1 A 439 MET ALA LYS ASN ARG ARG ASP ARG ASN SER TRP GLY GLY SEQRES 2 A 439 PHE SER GLU LYS THR TYR GLU TRP SER SER GLU GLU GLU SEQRES 3 A 439 GLU PRO VAL LYS LYS ALA GLY PRO VAL GLN VAL LEU ILE SEQRES 4 A 439 VAL LYS ASP ASP HIS SER PHE GLU LEU ASP GLU THR ALA SEQRES 5 A 439 LEU ASN ARG ILE LEU LEU SER GLU ALA VAL ARG ASP LYS SEQRES 6 A 439 GLU VAL VAL ALA VAL SER VAL ALA GLY ALA PHE ARG LYS SEQRES 7 A 439 GLY LYS SER PHE LEU MET ASP PHE MET LEU ARG TYR MET SEQRES 8 A 439 TYR ASN GLN GLU SER VAL ASP TRP VAL GLY ASP TYR ASN SEQRES 9 A 439 GLU PRO LEU THR GLY PHE SER TRP ARG GLY GLY SER GLU SEQRES 10 A 439 ARG GLU THR THR GLY ILE GLN ILE TRP SER GLU ILE PHE SEQRES 11 A 439 LEU ILE ASN LYS PRO ASP GLY LYS LYS VAL ALA VAL LEU SEQRES 12 A 439 LEU MET ASP THR GLN GLY THR PHE ASP SER GLN SER THR SEQRES 13 A 439 LEU ARG ASP SER ALA THR VAL PHE ALA LEU SER THR MET SEQRES 14 A 439 ILE SER SER ILE GLN VAL TYR ASN LEU SER GLN ASN VAL SEQRES 15 A 439 GLN GLU ASP ASP LEU GLN HIS LEU GLN LEU PHE THR GLU SEQRES 16 A 439 TYR GLY ARG LEU ALA MET GLU GLU THR PHE LEU LYS PRO SEQRES 17 A 439 PHE GLN SER LEU ILE PHE LEU VAL ARG ASP TRP SER PHE SEQRES 18 A 439 PRO TYR GLU PHE SER TYR GLY ALA ASP GLY GLY ALA LYS SEQRES 19 A 439 PHE LEU GLU LYS ARG LEU LYS VAL SER GLY ASN GLN HIS SEQRES 20 A 439 GLU GLU LEU GLN ASN VAL ARG LYS HIS ILE HIS SER CYS SEQRES 21 A 439 PHE THR ASN ILE SER CYS PHE LEU LEU PRO HIS PRO GLY SEQRES 22 A 439 LEU LYS VAL ALA THR ASN PRO ASN PHE ASP GLY LYS LEU SEQRES 23 A 439 LYS GLU ILE ASP ASP GLU PHE ILE LYS ASN LEU LYS ILE SEQRES 24 A 439 LEU ILE PRO TRP LEU LEU SER PRO GLU SER LEU ASP ILE SEQRES 25 A 439 LYS GLU ILE ASN GLY ASN LYS ILE THR CYS ARG GLY LEU SEQRES 26 A 439 VAL GLU TYR PHE LYS ALA TYR ILE LYS ILE TYR GLN GLY SEQRES 27 A 439 GLU GLU LEU PRO HIS PRO LYS SER MET LEU GLN ALA THR SEQRES 28 A 439 ALA GLU ALA ASN ASN LEU ALA ALA VAL ALA THR ALA LYS SEQRES 29 A 439 ASP THR TYR ASN LYS LYS MET GLU GLU ILE CYS GLY GLY SEQRES 30 A 439 ASP LYS PRO PHE LEU ALA PRO ASN ASP LEU GLN THR LYS SEQRES 31 A 439 HIS LEU GLN LEU LYS GLU GLU SER VAL LYS LEU PHE ARG SEQRES 32 A 439 GLY VAL LYS LYS MET GLY GLY GLU GLU PHE SER ARG ARG SEQRES 33 A 439 TYR LEU GLN GLN LEU GLU SER GLU ILE ASP GLU LEU TYR SEQRES 34 A 439 ILE GLN TYR ILE LYS HIS ASN ASP SER LYS HET GDP A 501 28 HET MG A 502 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 MG MG 2+ FORMUL 4 HOH *85(H2 O) HELIX 1 AA1 ASP A 49 LEU A 58 1 10 HELIX 2 AA2 GLY A 79 ASN A 93 1 15 HELIX 3 AA3 ARG A 158 SER A 171 1 14 HELIX 4 AA4 GLN A 183 HIS A 189 1 7 HELIX 5 AA5 LEU A 190 LEU A 192 5 3 HELIX 6 AA6 PHE A 193 PHE A 205 1 13 HELIX 7 AA7 GLY A 228 LEU A 240 1 13 HELIX 8 AA8 GLU A 249 CYS A 260 1 12 HELIX 9 AA9 GLY A 273 THR A 278 1 6 HELIX 10 AB1 LYS A 285 ILE A 289 5 5 HELIX 11 AB2 ASP A 290 SER A 306 1 17 HELIX 12 AB3 PRO A 307 LEU A 310 5 4 HELIX 13 AB4 THR A 321 GLN A 337 1 17 HELIX 14 AB5 HIS A 343 GLY A 376 1 34 HELIX 15 AB6 ALA A 383 VAL A 405 1 23 HELIX 16 AB7 GLY A 410 ASP A 437 1 28 SHEET 1 AA1 2 TYR A 19 TRP A 21 0 SHEET 2 AA1 2 PRO A 28 LYS A 30 -1 O VAL A 29 N GLU A 20 SHEET 1 AA2 5 PHE A 46 LEU A 48 0 SHEET 2 AA2 5 PRO A 34 VAL A 40 -1 N ILE A 39 O GLU A 47 SHEET 3 AA2 5 GLY A 122 TRP A 126 -1 O ILE A 123 N VAL A 37 SHEET 4 AA2 5 LYS A 139 GLY A 149 -1 O ASP A 146 N GLN A 124 SHEET 5 AA2 5 PHE A 130 ASN A 133 -1 N ILE A 132 O VAL A 140 SHEET 1 AA3 8 PHE A 46 LEU A 48 0 SHEET 2 AA3 8 PRO A 34 VAL A 40 -1 N ILE A 39 O GLU A 47 SHEET 3 AA3 8 GLY A 122 TRP A 126 -1 O ILE A 123 N VAL A 37 SHEET 4 AA3 8 LYS A 139 GLY A 149 -1 O ASP A 146 N GLN A 124 SHEET 5 AA3 8 VAL A 67 ALA A 75 1 N VAL A 68 O LEU A 143 SHEET 6 AA3 8 ILE A 173 SER A 179 1 O VAL A 175 N SER A 71 SHEET 7 AA3 8 PHE A 209 ARG A 217 1 O ARG A 217 N LEU A 178 SHEET 8 AA3 8 PHE A 261 LEU A 268 1 O PHE A 267 N VAL A 216 SHEET 1 AA4 2 GLU A 314 ILE A 315 0 SHEET 2 AA4 2 ASN A 318 LYS A 319 -1 O ASN A 318 N ILE A 315 LINK OD2 ASP A 146 MG MG A 502 1555 1555 2.52 LINK O3B GDP A 501 MG MG A 502 1555 1555 2.55 SITE 1 AC1 16 ARG A 77 LYS A 78 GLY A 79 LYS A 80 SITE 2 AC1 16 SER A 81 PHE A 82 GLN A 148 ARG A 217 SITE 3 AC1 16 ASP A 218 HIS A 271 PRO A 272 VAL A 276 SITE 4 AC1 16 ASN A 279 PRO A 280 MG A 502 HOH A 624 SITE 1 AC2 4 SER A 81 ASP A 146 GLN A 148 GDP A 501 CRYST1 54.170 138.860 202.190 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018460 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007201 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004946 0.00000