HEADER TRANSLATION/RNA/INHIBITOR 26-JUN-20 6XKI TITLE CRYSTAL STRUCTURE OF EIF4A-I IN COMPLEX WITH RNA BOUND TO DES-MEPATEA, TITLE 2 A PATEAMINE A ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC INITIATION FACTOR 4A-I; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EIF4A-I,ATP-DEPENDENT RNA HELICASE EIF4A-1; COMPND 5 EC: 3.6.4.13; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'-R(*AP*GP*AP*GP*AP*GP*AP*GP*AP*G)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: EIF4A1, DDX2A, EIF4A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS INHIBITOR, RNA, TRANSLATION INITIATION, TRANSLATION, TRANSLATION-RNA- KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.LIANG,S.K.NAINENI,J.PELLETIER,B.NAGAR REVDAT 4 18-OCT-23 6XKI 1 REMARK REVDAT 3 30-JUN-21 6XKI 1 JRNL REVDAT 2 20-JAN-21 6XKI 1 JRNL REVDAT 1 06-JAN-21 6XKI 0 JRNL AUTH S.K.NAINENI,J.LIANG,K.HULL,R.CENCIC,M.ZHU,P.NORTHCOTE, JRNL AUTH 2 P.TEESDALE-SPITTLE,D.ROMO,B.NAGAR,J.PELLETIER JRNL TITL FUNCTIONAL MIMICRY REVEALED BY THE CRYSTAL STRUCTURE OF AN JRNL TITL 2 EIF4A:RNA COMPLEX BOUND TO THE INTERFACIAL INHIBITOR, JRNL TITL 3 DESMETHYL PATEAMINE A. JRNL REF CELL CHEM BIOL V. 28 825 2021 JRNL REFN ESSN 2451-9456 JRNL PMID 33412110 JRNL DOI 10.1016/J.CHEMBIOL.2020.12.006 REMARK 2 REMARK 2 RESOLUTION. 2.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18_3861 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.8 REMARK 3 NUMBER OF REFLECTIONS : 10624 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 536 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5800 - 4.5600 1.00 2981 161 0.2036 0.2519 REMARK 3 2 4.5600 - 3.6200 1.00 2871 140 0.2100 0.2521 REMARK 3 3 3.6200 - 3.1600 0.93 2641 130 0.2504 0.2859 REMARK 3 4 3.1600 - 2.8700 0.57 1595 105 0.2882 0.2929 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.272 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3389 REMARK 3 ANGLE : 0.470 4632 REMARK 3 CHIRALITY : 0.040 536 REMARK 3 PLANARITY : 0.002 550 REMARK 3 DIHEDRAL : 11.421 1311 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5687 -29.2218 -1.0022 REMARK 3 T TENSOR REMARK 3 T11: 1.8843 T22: 0.8344 REMARK 3 T33: 0.6332 T12: -0.1983 REMARK 3 T13: -0.6429 T23: -0.1322 REMARK 3 L TENSOR REMARK 3 L11: 0.6940 L22: 0.5747 REMARK 3 L33: 0.4858 L12: 0.5189 REMARK 3 L13: 0.2382 L23: 0.2148 REMARK 3 S TENSOR REMARK 3 S11: 0.0274 S12: -0.6083 S13: -0.1242 REMARK 3 S21: 0.8040 S22: -0.1291 S23: -0.3435 REMARK 3 S31: 0.3426 S32: 0.0086 S33: 0.0004 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 167 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8200 -39.7255 -16.0258 REMARK 3 T TENSOR REMARK 3 T11: 0.6625 T22: 0.4416 REMARK 3 T33: 0.4778 T12: 0.0157 REMARK 3 T13: -0.3331 T23: -0.0600 REMARK 3 L TENSOR REMARK 3 L11: 0.7238 L22: 2.3779 REMARK 3 L33: 2.5306 L12: 0.8199 REMARK 3 L13: 0.8204 L23: -0.5822 REMARK 3 S TENSOR REMARK 3 S11: -0.0460 S12: -0.3627 S13: 0.0861 REMARK 3 S21: 1.3838 S22: -0.1751 S23: -1.2182 REMARK 3 S31: -0.4312 S32: 0.7883 S33: -0.0285 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 168 THROUGH 226 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.5198 -42.4982 -19.1648 REMARK 3 T TENSOR REMARK 3 T11: 0.4151 T22: 0.3343 REMARK 3 T33: 0.2193 T12: 0.0132 REMARK 3 T13: -0.0457 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 2.2970 L22: 5.6192 REMARK 3 L33: 2.2071 L12: -0.4187 REMARK 3 L13: -0.6578 L23: -0.0570 REMARK 3 S TENSOR REMARK 3 S11: 0.0439 S12: -0.2127 S13: -0.0599 REMARK 3 S21: 1.0694 S22: 0.0187 S23: 0.1225 REMARK 3 S31: -0.0448 S32: -0.2319 S33: -0.0667 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 227 THROUGH 255 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.9545 -20.2683 -17.5595 REMARK 3 T TENSOR REMARK 3 T11: 1.2343 T22: 0.7066 REMARK 3 T33: 0.6788 T12: 0.2298 REMARK 3 T13: 0.3063 T23: -0.1106 REMARK 3 L TENSOR REMARK 3 L11: 0.9781 L22: 4.5780 REMARK 3 L33: 0.7865 L12: 0.4490 REMARK 3 L13: -0.0694 L23: -1.8784 REMARK 3 S TENSOR REMARK 3 S11: -0.0159 S12: -0.3107 S13: 0.6703 REMARK 3 S21: 0.7717 S22: -0.0047 S23: 0.2998 REMARK 3 S31: -0.0087 S32: -0.2200 S33: -0.1788 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 256 THROUGH 353 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5292 -17.7441 -34.2059 REMARK 3 T TENSOR REMARK 3 T11: 0.1769 T22: 0.4178 REMARK 3 T33: 0.6963 T12: -0.0064 REMARK 3 T13: -0.0516 T23: 0.0300 REMARK 3 L TENSOR REMARK 3 L11: 1.2887 L22: 2.2311 REMARK 3 L33: 1.6316 L12: -0.4547 REMARK 3 L13: -0.3687 L23: -0.7064 REMARK 3 S TENSOR REMARK 3 S11: -0.0178 S12: 0.2708 S13: 0.2516 REMARK 3 S21: 0.2017 S22: -0.0231 S23: -0.9422 REMARK 3 S31: -0.1885 S32: 0.2566 S33: 0.0205 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 354 THROUGH 390 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.9058 -14.7792 -24.9228 REMARK 3 T TENSOR REMARK 3 T11: 0.5595 T22: 0.4748 REMARK 3 T33: 0.7936 T12: 0.1513 REMARK 3 T13: 0.1872 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 1.5245 L22: 8.3253 REMARK 3 L33: 3.8098 L12: -0.7955 REMARK 3 L13: -2.2445 L23: -0.7600 REMARK 3 S TENSOR REMARK 3 S11: 0.1973 S12: 0.0490 S13: 0.8104 REMARK 3 S21: 0.9584 S22: 0.3305 S23: 0.5359 REMARK 3 S31: -0.5265 S32: -0.5358 S33: -0.3647 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 391 THROUGH 406 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.3937 -4.9146 -21.8201 REMARK 3 T TENSOR REMARK 3 T11: 1.0846 T22: 0.6600 REMARK 3 T33: 0.9754 T12: 0.1466 REMARK 3 T13: 0.2323 T23: 0.0468 REMARK 3 L TENSOR REMARK 3 L11: 3.5226 L22: 2.2374 REMARK 3 L33: 1.0818 L12: -0.1617 REMARK 3 L13: 0.5583 L23: 1.2528 REMARK 3 S TENSOR REMARK 3 S11: 0.1149 S12: -0.1060 S13: 1.0675 REMARK 3 S21: 0.8167 S22: 0.3150 S23: -0.4019 REMARK 3 S31: -0.1850 S32: 0.2463 S33: -0.3644 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.3908 -36.8300 -36.1051 REMARK 3 T TENSOR REMARK 3 T11: -0.8622 T22: 0.6565 REMARK 3 T33: 0.5976 T12: -0.1451 REMARK 3 T13: 0.1667 T23: 0.0783 REMARK 3 L TENSOR REMARK 3 L11: 0.6278 L22: 1.5419 REMARK 3 L33: 1.8103 L12: -0.1629 REMARK 3 L13: 0.4631 L23: -0.2090 REMARK 3 S TENSOR REMARK 3 S11: -0.1899 S12: 0.2821 S13: 0.0736 REMARK 3 S21: -0.0383 S22: 0.0898 S23: 1.0273 REMARK 3 S31: 0.2214 S32: -0.5414 S33: 0.0918 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XKI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1000250105. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11588 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.870 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 11.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5ZC9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.7, 1.9 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.39250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.97100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 76.83150 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.39250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.97100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 76.83150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.39250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.97100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 76.83150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.39250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.97100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 76.83150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 18 REMARK 465 PRO A 19 REMARK 465 GLU A 20 REMARK 465 GLY A 21 REMARK 465 VAL A 22 REMARK 465 ILE A 23 REMARK 465 GLU A 24 REMARK 465 SER A 25 REMARK 465 ASN A 26 REMARK 465 TRP A 27 REMARK 465 ASN A 28 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 53 -41.51 -138.74 REMARK 500 SER A 56 -177.19 -69.52 REMARK 500 CYS A 134 74.56 -117.94 REMARK 500 SER A 213 141.56 -173.95 REMARK 500 MET A 216 77.99 -152.55 REMARK 500 PHE A 227 23.24 -145.54 REMARK 500 ASP A 230 80.29 35.05 REMARK 500 GLU A 254 -64.19 68.17 REMARK 500 THR A 273 -126.11 -147.74 REMARK 500 MET A 302 116.80 -160.81 REMARK 500 PHE A 366 79.50 53.45 REMARK 500 ASN A 392 70.27 46.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP A 501 O3G REMARK 620 2 ANP A 501 O1B 87.0 REMARK 620 3 HOH A 601 O 98.7 87.7 REMARK 620 4 HOH A 602 O 168.6 92.1 92.6 REMARK 620 5 HOH A 613 O 85.3 84.9 171.4 83.3 REMARK 620 6 HOH A 617 O 90.6 173.0 86.1 91.6 101.5 REMARK 620 N 1 2 3 4 5 DBREF 6XKI A 19 406 UNP P60843 IF4A1_MOUSE 19 406 DBREF 6XKI B 1 10 PDB 6XKI 6XKI 1 10 SEQADV 6XKI GLY A 18 UNP P60843 EXPRESSION TAG SEQRES 1 A 389 GLY PRO GLU GLY VAL ILE GLU SER ASN TRP ASN GLU ILE SEQRES 2 A 389 VAL ASP SER PHE ASP ASP MET ASN LEU SER GLU SER LEU SEQRES 3 A 389 LEU ARG GLY ILE TYR ALA TYR GLY PHE GLU LYS PRO SER SEQRES 4 A 389 ALA ILE GLN GLN ARG ALA ILE LEU PRO CYS ILE LYS GLY SEQRES 5 A 389 TYR ASP VAL ILE ALA GLN ALA GLN SER GLY THR GLY LYS SEQRES 6 A 389 THR ALA THR PHE ALA ILE SER ILE LEU GLN GLN ILE GLU SEQRES 7 A 389 LEU ASP LEU LYS ALA THR GLN ALA LEU VAL LEU ALA PRO SEQRES 8 A 389 THR ARG GLU LEU ALA GLN GLN ILE GLN LYS VAL VAL MET SEQRES 9 A 389 ALA LEU GLY ASP TYR MET GLY ALA SER CYS HIS ALA CYS SEQRES 10 A 389 ILE GLY GLY THR ASN VAL ARG ALA GLU VAL GLN LYS LEU SEQRES 11 A 389 GLN MET GLU ALA PRO HIS ILE ILE VAL GLY THR PRO GLY SEQRES 12 A 389 ARG VAL PHE ASP MET LEU ASN ARG ARG TYR LEU SER PRO SEQRES 13 A 389 LYS TYR ILE LYS MET PHE VAL LEU ASP GLU ALA ASP GLU SEQRES 14 A 389 MET LEU SER ARG GLY PHE LYS ASP GLN ILE TYR ASP ILE SEQRES 15 A 389 PHE GLN LYS LEU ASN SER ASN THR GLN VAL VAL LEU LEU SEQRES 16 A 389 SER ALA THR MET PRO SER ASP VAL LEU GLU VAL THR LYS SEQRES 17 A 389 LYS PHE MET ARG ASP PRO ILE ARG ILE LEU VAL LYS LYS SEQRES 18 A 389 GLU GLU LEU THR LEU GLU GLY ILE ARG GLN PHE TYR ILE SEQRES 19 A 389 ASN VAL GLU ARG GLU GLU TRP LYS LEU ASP THR LEU CYS SEQRES 20 A 389 ASP LEU TYR GLU THR LEU THR ILE THR GLN ALA VAL ILE SEQRES 21 A 389 PHE ILE ASN THR ARG ARG LYS VAL ASP TRP LEU THR GLU SEQRES 22 A 389 LYS MET HIS ALA ARG ASP PHE THR VAL SER ALA MET HIS SEQRES 23 A 389 GLY ASP MET ASP GLN LYS GLU ARG ASP VAL ILE MET ARG SEQRES 24 A 389 GLU PHE ARG SER GLY SER SER ARG VAL LEU ILE THR THR SEQRES 25 A 389 ASP LEU LEU ALA ARG GLY ILE ASP VAL GLN GLN VAL SER SEQRES 26 A 389 LEU VAL ILE ASN TYR ASP LEU PRO THR ASN ARG GLU ASN SEQRES 27 A 389 TYR ILE HIS ARG ILE GLY ARG GLY GLY ARG PHE GLY ARG SEQRES 28 A 389 LYS GLY VAL ALA ILE ASN MET VAL THR GLU GLU ASP LYS SEQRES 29 A 389 ARG THR LEU ARG ASP ILE GLU THR PHE TYR ASN THR SER SEQRES 30 A 389 ILE GLU GLU MET PRO LEU ASN VAL ALA ASP LEU ILE SEQRES 1 B 10 A G A G A G A G A G HET ANP A 501 43 HET MG A 502 1 HET V6D A 503 81 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM V6D (3S,6Z,8E,11S,15R)-15-AMINO-3-[(1E,3E,5E)-7- HETNAM 2 V6D (DIMETHYLAMINO)-2,5-DIMETHYLHEPTA-1,3,5-TRIEN-1-YL]-9, HETNAM 3 V6D 11-DIMETHYL-4,12-DIOXA-20-THIA-21- HETNAM 4 V6D AZABICYCLO[16.2.1]HENICOSA-1(21),6,8,18-TETRAENE-5,13- HETNAM 5 V6D DIONE HETSYN V6D DES-METHYL PATEAMINE A FORMUL 3 ANP C10 H17 N6 O12 P3 FORMUL 4 MG MG 2+ FORMUL 5 V6D C30 H43 N3 O4 S FORMUL 6 HOH *26(H2 O) HELIX 1 AA1 SER A 33 ASN A 38 5 6 HELIX 2 AA2 SER A 40 GLY A 51 1 12 HELIX 3 AA3 SER A 56 LYS A 68 1 13 HELIX 4 AA4 GLY A 81 ILE A 94 1 14 HELIX 5 AA5 THR A 109 GLY A 124 1 16 HELIX 6 AA6 ASP A 125 GLY A 128 5 4 HELIX 7 AA7 ASN A 139 GLU A 150 1 12 HELIX 8 AA8 THR A 158 ARG A 168 1 11 HELIX 9 AA9 GLU A 183 LEU A 188 1 6 HELIX 10 AB1 SER A 189 GLN A 201 1 13 HELIX 11 AB2 PRO A 217 LYS A 225 1 9 HELIX 12 AB3 LYS A 237 LEU A 241 5 5 HELIX 13 AB4 ARG A 255 GLU A 257 5 3 HELIX 14 AB5 TRP A 258 LEU A 266 1 9 HELIX 15 AB6 LEU A 266 THR A 271 1 6 HELIX 16 AB7 THR A 281 ALA A 294 1 14 HELIX 17 AB8 ASP A 307 SER A 320 1 14 HELIX 18 AB9 ASP A 330 ALA A 333 5 4 HELIX 19 AC1 GLU A 354 GLY A 361 1 8 HELIX 20 AC2 GLU A 378 ASN A 392 1 15 HELIX 21 AC3 LEU A 400 LEU A 405 5 6 SHEET 1 AA1 7 CYS A 131 CYS A 134 0 SHEET 2 AA1 7 ILE A 154 GLY A 157 1 O VAL A 156 N HIS A 132 SHEET 3 AA1 7 ALA A 103 LEU A 106 1 N VAL A 105 O ILE A 155 SHEET 4 AA1 7 MET A 178 ASP A 182 1 O VAL A 180 N LEU A 104 SHEET 5 AA1 7 GLN A 208 LEU A 212 1 O GLN A 208 N PHE A 179 SHEET 6 AA1 7 VAL A 72 ALA A 74 1 N VAL A 72 O LEU A 211 SHEET 7 AA1 7 ILE A 232 ILE A 234 1 O ILE A 232 N ILE A 73 SHEET 1 AA2 7 SER A 300 MET A 302 0 SHEET 2 AA2 7 VAL A 325 THR A 328 1 O ILE A 327 N SER A 300 SHEET 3 AA2 7 GLN A 274 PHE A 278 1 N ILE A 277 O LEU A 326 SHEET 4 AA2 7 VAL A 341 ASN A 346 1 O ILE A 345 N VAL A 276 SHEET 5 AA2 7 GLY A 370 THR A 377 1 O ILE A 373 N ASN A 346 SHEET 6 AA2 7 ILE A 246 GLU A 254 1 N PHE A 249 O ALA A 372 SHEET 7 AA2 7 GLU A 396 GLU A 397 1 O GLU A 396 N GLN A 248 LINK O3G ANP A 501 MG MG A 502 1555 1555 2.16 LINK O1B ANP A 501 MG MG A 502 1555 1555 2.12 LINK MG MG A 502 O HOH A 601 1555 1555 2.20 LINK MG MG A 502 O HOH A 602 1555 1555 2.15 LINK MG MG A 502 O HOH A 613 1555 1555 1.99 LINK MG MG A 502 O HOH A 617 1555 1555 1.97 CRYST1 66.785 99.942 153.663 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014973 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010006 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006508 0.00000