HEADER VIRAL PROTEIN/IMMUNE SYSTEM 26-JUN-20 6XKQ TITLE CRYSTAL STRUCTURE OF SARS-COV-2 RECEPTOR BINDING DOMAIN IN COMPLEX TITLE 2 WITH NEUTRALIZING ANTIBODY CV07-250 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE PROTEIN S1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CV07-250 HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: CV07-250 LIGHT CHAIN; COMPND 11 CHAIN: L; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: S, 2; SOURCE 7 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 10090 KEYWDS SARS-COV-2, ANTIBODY, SPIKE, CORONAVIRUS, COVID-19, IMMUNE SYSTEM, KEYWDS 2 VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.YUAN,H.LIU,X.ZHU,N.C.WU,I.A.WILSON REVDAT 4 18-OCT-23 6XKQ 1 REMARK REVDAT 3 25-NOV-20 6XKQ 1 JRNL REVDAT 2 04-NOV-20 6XKQ 1 JRNL REVDAT 1 14-OCT-20 6XKQ 0 JRNL AUTH J.KREYE,S.M.REINCKE,H.C.KORNAU,E.SANCHEZ-SENDIN,V.M.CORMAN, JRNL AUTH 2 H.LIU,M.YUAN,N.C.WU,X.ZHU,C.D.LEE,J.TRIMPERT,M.HOLTJE, JRNL AUTH 3 K.DIETERT,L.STOFFLER,N.VON WARDENBURG,S.VAN HOOF, JRNL AUTH 4 M.A.HOMEYER,J.HOFFMANN,A.ABDELGAWAD,A.D.GRUBER, JRNL AUTH 5 L.D.BERTZBACH,D.VLADIMIROVA,L.Y.LI,P.C.BARTHEL,K.SKRINER, JRNL AUTH 6 A.C.HOCKE,S.HIPPENSTIEL,M.WITZENRATH,N.SUTTORP,F.KURTH, JRNL AUTH 7 C.FRANKE,M.ENDRES,D.SCHMITZ,L.M.JEWOROWSKI,A.RICHTER, JRNL AUTH 8 M.L.SCHMIDT,T.SCHWARZ,M.A.MULLER,C.DROSTEN,D.WENDISCH, JRNL AUTH 9 L.E.SANDER,N.OSTERRIEDER,I.A.WILSON,H.PRUSS JRNL TITL A THERAPEUTIC NON-SELF-REACTIVE SARS-COV-2 ANTIBODY PROTECTS JRNL TITL 2 FROM LUNG PATHOLOGY IN A COVID-19 HAMSTER MODEL. JRNL REF CELL V. 183 1058 2020 JRNL REFN ISSN 1097-4172 JRNL PMID 33058755 JRNL DOI 10.1016/J.CELL.2020.09.049 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 27884 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1364 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.1020 - 5.4916 0.99 2837 141 0.2306 0.2729 REMARK 3 2 5.4916 - 4.3597 1.00 2709 145 0.1876 0.2170 REMARK 3 3 4.3597 - 3.8089 0.99 2625 153 0.1902 0.2637 REMARK 3 4 3.8089 - 3.4607 1.00 2684 125 0.1955 0.2312 REMARK 3 5 3.4607 - 3.2127 1.00 2635 129 0.1896 0.2615 REMARK 3 6 3.2127 - 3.0233 1.00 2667 142 0.2015 0.2487 REMARK 3 7 3.0233 - 2.8719 1.00 2610 149 0.2025 0.2750 REMARK 3 8 2.8719 - 2.7469 0.99 2617 121 0.2177 0.3060 REMARK 3 9 2.7469 - 2.6412 1.00 2594 145 0.2282 0.2584 REMARK 3 10 2.6412 - 2.5501 0.97 2542 114 0.2608 0.3335 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -26.0005 -32.7479 -26.7316 REMARK 3 T TENSOR REMARK 3 T11: 0.3786 T22: 0.3848 REMARK 3 T33: 0.3690 T12: -0.0274 REMARK 3 T13: 0.0099 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 0.3922 L22: 0.6965 REMARK 3 L33: 1.0629 L12: 0.0841 REMARK 3 L13: 0.5682 L23: 0.4249 REMARK 3 S TENSOR REMARK 3 S11: -0.0024 S12: 0.0635 S13: 0.0014 REMARK 3 S21: -0.2311 S22: 0.0701 S23: 0.0574 REMARK 3 S31: -0.0177 S32: 0.1029 S33: -0.0760 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XKQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000250321. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27942 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 8.800 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.94600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6W41 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.085 M HEPES PH 7.5 10% (V/V) REMARK 280 ETHYLENE GLYCOL 15% (V/V) GLYCEROL 8.5% (V/V) 2-PROPANOL 17% (W/ REMARK 280 V) POLYETHYLENE GLYCOL 4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.98500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.84250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.03500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.84250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.98500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.03500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 319 REMARK 465 VAL A 320 REMARK 465 GLN A 321 REMARK 465 PRO A 322 REMARK 465 THR A 323 REMARK 465 GLU A 324 REMARK 465 SER A 325 REMARK 465 ILE A 326 REMARK 465 VAL A 327 REMARK 465 ARG A 328 REMARK 465 PHE A 329 REMARK 465 PRO A 330 REMARK 465 ASN A 331 REMARK 465 ILE A 332 REMARK 465 THR A 333 REMARK 465 ASN A 334 REMARK 465 LEU A 335 REMARK 465 CYS A 336 REMARK 465 PRO A 337 REMARK 465 ARG A 357 REMARK 465 ILE A 358 REMARK 465 SER A 359 REMARK 465 ASN A 360 REMARK 465 CYS A 361 REMARK 465 VAL A 362 REMARK 465 ALA A 363 REMARK 465 ASP A 364 REMARK 465 TYR A 365 REMARK 465 SER A 366 REMARK 465 SER A 371 REMARK 465 ALA A 372 REMARK 465 SER A 373 REMARK 465 PHE A 374 REMARK 465 SER A 383 REMARK 465 PRO A 384 REMARK 465 THR A 385 REMARK 465 LYS A 386 REMARK 465 LEU A 387 REMARK 465 ASN A 388 REMARK 465 ASP A 389 REMARK 465 LEU A 390 REMARK 465 CYS A 391 REMARK 465 PHE A 392 REMARK 465 THR A 393 REMARK 465 ASN A 394 REMARK 465 VAL A 395 REMARK 465 TYR A 396 REMARK 465 PHE A 515 REMARK 465 GLU A 516 REMARK 465 LEU A 517 REMARK 465 LEU A 518 REMARK 465 HIS A 519 REMARK 465 ALA A 520 REMARK 465 PRO A 521 REMARK 465 ALA A 522 REMARK 465 THR A 523 REMARK 465 VAL A 524 REMARK 465 CYS A 525 REMARK 465 GLY A 526 REMARK 465 PRO A 527 REMARK 465 LYS A 528 REMARK 465 LYS A 529 REMARK 465 SER A 530 REMARK 465 THR A 531 REMARK 465 ASN A 532 REMARK 465 LEU A 533 REMARK 465 VAL A 534 REMARK 465 LYS A 535 REMARK 465 ASN A 536 REMARK 465 LYS A 537 REMARK 465 CYS A 538 REMARK 465 VAL A 539 REMARK 465 ASN A 540 REMARK 465 PHE A 541 REMARK 465 SER A 542 REMARK 465 GLY A 543 REMARK 465 HIS A 544 REMARK 465 HIS A 545 REMARK 465 HIS A 546 REMARK 465 HIS A 547 REMARK 465 HIS A 548 REMARK 465 HIS A 549 REMARK 465 SER H 214 REMARK 465 CYS H 215 REMARK 465 GLN L 1 REMARK 465 SER L 2 REMARK 465 CYS L 211 REMARK 465 SER L 212 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 340 CG CD OE1 OE2 REMARK 470 ASP A 427 CG OD1 OD2 REMARK 470 ASP A 428 CG OD1 OD2 REMARK 470 GLN H 1 CG CD OE1 NE2 REMARK 470 THR H 190 OG1 CG2 REMARK 470 LYS H 213 CE NZ REMARK 470 LYS L 156 CG CD CE NZ REMARK 470 LYS L 166 CD CE NZ REMARK 470 LYS L 186 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS H 139 SG CYS H 195 1.70 REMARK 500 OD1 ASP A 467 OG SER A 469 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 341 -68.42 -101.90 REMARK 500 ASN A 422 -66.25 -127.25 REMARK 500 GLN H 3 -24.18 -147.47 REMARK 500 PHE H 29 0.86 -67.21 REMARK 500 THR H 76 70.15 48.38 REMARK 500 ASP H 96 94.71 -68.58 REMARK 500 ASP H 143 62.96 62.28 REMARK 500 ASP L 27B -79.72 -132.40 REMARK 500 PHE L 32 57.90 -108.67 REMARK 500 VAL L 51 -32.58 -145.57 REMARK 500 ALA L 84 -179.85 -176.52 REMARK 500 LEU L 106A 106.08 -58.10 REMARK 500 SER L 152 -9.01 69.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6XKP RELATED DB: PDB DBREF 6XKQ A 319 541 UNP P0DTC2 SPIKE_SARS2 319 541 DBREF 6XKQ H 1 215 PDB 6XKQ 6XKQ 1 215 DBREF 6XKQ L 1 212 PDB 6XKQ 6XKQ 1 212 SEQADV 6XKQ SER A 542 UNP P0DTC2 EXPRESSION TAG SEQADV 6XKQ GLY A 543 UNP P0DTC2 EXPRESSION TAG SEQADV 6XKQ HIS A 544 UNP P0DTC2 EXPRESSION TAG SEQADV 6XKQ HIS A 545 UNP P0DTC2 EXPRESSION TAG SEQADV 6XKQ HIS A 546 UNP P0DTC2 EXPRESSION TAG SEQADV 6XKQ HIS A 547 UNP P0DTC2 EXPRESSION TAG SEQADV 6XKQ HIS A 548 UNP P0DTC2 EXPRESSION TAG SEQADV 6XKQ HIS A 549 UNP P0DTC2 EXPRESSION TAG SEQRES 1 A 231 ARG VAL GLN PRO THR GLU SER ILE VAL ARG PHE PRO ASN SEQRES 2 A 231 ILE THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA SEQRES 3 A 231 THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG SEQRES 4 A 231 ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SEQRES 5 A 231 SER ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER SEQRES 6 A 231 PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR SEQRES 7 A 231 ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN SEQRES 8 A 231 ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN SEQRES 9 A 231 TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA SEQRES 10 A 231 TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN SEQRES 11 A 231 TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU SEQRES 12 A 231 LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN SEQRES 13 A 231 ALA GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN SEQRES 14 A 231 CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR SEQRES 15 A 231 ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SEQRES 16 A 231 SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY SEQRES 17 A 231 PRO LYS LYS SER THR ASN LEU VAL LYS ASN LYS CYS VAL SEQRES 18 A 231 ASN PHE SER GLY HIS HIS HIS HIS HIS HIS SEQRES 1 H 224 GLN VAL GLN LEU VAL GLN SER GLU ALA GLU VAL LYS GLU SEQRES 2 H 224 PRO GLY ALA SER VAL GLU VAL SER CYS LYS ALA SER GLY SEQRES 3 H 224 TYR ASN PHE THR ASN PHE ALA ILE SER TRP VAL ARG GLN SEQRES 4 H 224 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE SER SEQRES 5 H 224 GLY TYR ASN GLY ASP THR ASN SER ALA GLN LYS PHE LEU SEQRES 6 H 224 GLY ARG VAL THR MET THR THR ASP THR SER THR THR THR SEQRES 7 H 224 ALA TYR MET GLU LEU ARG SER LEU ARG SER ASP ASP THR SEQRES 8 H 224 ALA VAL TYR TYR CYS ALA GLY SER ASP ASN TYR GLY PHE SEQRES 9 H 224 PRO TYR ASN GLY MET ASP VAL TRP GLY GLN GLY THR THR SEQRES 10 H 224 VAL THR VAL PHE ASN GLN ILE LYS PRO PRO SER VAL PHE SEQRES 11 H 224 PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY THR SEQRES 12 H 224 ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU SEQRES 13 H 224 PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER SEQRES 14 H 224 GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY SEQRES 15 H 224 LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER SEQRES 16 H 224 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 H 224 LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO SEQRES 18 H 224 LYS SER CYS SEQRES 1 L 216 GLN SER ALA LEU THR GLN PRO PRO SER ALA SER GLY SER SEQRES 2 L 216 PRO GLY GLN SER VAL THR ILE SER CYS THR GLY THR SER SEQRES 3 L 216 SER ASP LEU GLY ALA TYR HIS PHE VAL THR TRP TYR GLN SEQRES 4 L 216 HIS TYR PRO GLY LYS ALA PRO LYS VAL MET ILE TYR GLY SEQRES 5 L 216 VAL ARG LYS ARG PRO SER GLY VAL PRO ASP ARG PHE SER SEQRES 6 L 216 GLY SER LYS SER GLY ASN THR ALA SER LEU THR VAL SER SEQRES 7 L 216 GLY LEU GLN ASP GLU ASP GLU ALA ASP TYR TYR CYS SER SEQRES 8 L 216 SER TYR ALA GLY ASN ASN ASP PHE VAL PHE GLY GLY GLY SEQRES 9 L 216 THR LYS LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SEQRES 10 L 216 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 L 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 L 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 L 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 L 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 L 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 L 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 L 216 THR VAL ALA PRO THR GLU CYS SER HET NAG A 601 14 HET NAG H 301 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 2(C8 H15 N O6) FORMUL 6 HOH *77(H2 O) HELIX 1 AA1 PHE A 338 ASN A 343 1 6 HELIX 2 AA2 ASP A 405 ILE A 410 5 6 HELIX 3 AA3 GLY A 416 ASN A 422 1 7 HELIX 4 AA4 SER A 438 SER A 443 1 6 HELIX 5 AA5 GLY A 502 TYR A 505 5 4 HELIX 6 AA6 ASN H 28 THR H 30 5 3 HELIX 7 AA7 GLN H 61 LEU H 64 5 4 HELIX 8 AA8 ARG H 83 THR H 87 5 5 HELIX 9 AA9 SER H 155 ALA H 157 5 3 HELIX 10 AB1 SER H 186 THR H 190 5 5 HELIX 11 AB2 LYS H 200 ASN H 203 5 4 HELIX 12 AB3 GLN L 79 GLU L 83 5 5 HELIX 13 AB4 SER L 121 ALA L 127 1 7 HELIX 14 AB5 THR L 181 HIS L 188 1 8 SHEET 1 AA1 5 ASN A 354 ARG A 355 0 SHEET 2 AA1 5 ASP A 398 ARG A 403 -1 O SER A 399 N ASN A 354 SHEET 3 AA1 5 PRO A 507 LEU A 513 -1 O TYR A 508 N ILE A 402 SHEET 4 AA1 5 GLY A 431 ASN A 437 -1 N CYS A 432 O LEU A 513 SHEET 5 AA1 5 THR A 376 TYR A 380 -1 N TYR A 380 O GLY A 431 SHEET 1 AA2 2 LEU A 452 ARG A 454 0 SHEET 2 AA2 2 LEU A 492 SER A 494 -1 O GLN A 493 N TYR A 453 SHEET 1 AA3 2 TYR A 473 GLN A 474 0 SHEET 2 AA3 2 CYS A 488 TYR A 489 -1 O TYR A 489 N TYR A 473 SHEET 1 AA4 6 GLU H 10 LYS H 12 0 SHEET 2 AA4 6 THR H 107 VAL H 111 1 O THR H 108 N GLU H 10 SHEET 3 AA4 6 ALA H 88 ASP H 96 -1 N ALA H 88 O VAL H 109 SHEET 4 AA4 6 PHE H 32 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA4 6 GLU H 46 SER H 52 -1 O MET H 48 N TRP H 36 SHEET 6 AA4 6 THR H 57 SER H 59 -1 O ASN H 58 N TRP H 50 SHEET 1 AA5 8 GLU H 10 LYS H 12 0 SHEET 2 AA5 8 THR H 107 VAL H 111 1 O THR H 108 N GLU H 10 SHEET 3 AA5 8 ALA H 88 ASP H 96 -1 N ALA H 88 O VAL H 109 SHEET 4 AA5 8 VAL H 102 GLY H 104 -1 O VAL H 102 N GLY H 94 SHEET 5 AA5 8 VAL H 2 GLN H 6 1 N GLN H 3 O TRP H 103 SHEET 6 AA5 8 VAL H 18 LYS H 23 -1 O LYS H 23 N VAL H 5 SHEET 7 AA5 8 THR H 77 LEU H 82 -1 O ALA H 78 N CYS H 22 SHEET 8 AA5 8 VAL H 67 ASP H 72 -1 N THR H 68 O GLU H 81 SHEET 1 AA6 4 SER H 119 LEU H 123 0 SHEET 2 AA6 4 THR H 134 TYR H 144 -1 O LYS H 142 N SER H 119 SHEET 3 AA6 4 TYR H 175 PRO H 184 -1 O LEU H 177 N VAL H 141 SHEET 4 AA6 4 VAL H 162 THR H 164 -1 N HIS H 163 O VAL H 180 SHEET 1 AA7 4 SER H 119 LEU H 123 0 SHEET 2 AA7 4 THR H 134 TYR H 144 -1 O LYS H 142 N SER H 119 SHEET 3 AA7 4 TYR H 175 PRO H 184 -1 O LEU H 177 N VAL H 141 SHEET 4 AA7 4 VAL H 168 LEU H 169 -1 N VAL H 168 O SER H 176 SHEET 1 AA8 3 THR H 150 TRP H 153 0 SHEET 2 AA8 3 ILE H 194 HIS H 199 -1 O ASN H 196 N SER H 152 SHEET 3 AA8 3 THR H 204 LYS H 209 -1 O VAL H 206 N VAL H 197 SHEET 1 AA9 5 SER L 9 GLY L 13 0 SHEET 2 AA9 5 THR L 102 VAL L 106 1 O LYS L 103 N ALA L 11 SHEET 3 AA9 5 ALA L 84 TYR L 91 -1 N ALA L 84 O LEU L 104 SHEET 4 AA9 5 VAL L 33 HIS L 38 -1 N HIS L 38 O ASP L 85 SHEET 5 AA9 5 LYS L 45 ILE L 48 -1 O LYS L 45 N GLN L 37 SHEET 1 AB1 4 SER L 9 GLY L 13 0 SHEET 2 AB1 4 THR L 102 VAL L 106 1 O LYS L 103 N ALA L 11 SHEET 3 AB1 4 ALA L 84 TYR L 91 -1 N ALA L 84 O LEU L 104 SHEET 4 AB1 4 PHE L 96 PHE L 98 -1 O VAL L 97 N SER L 90 SHEET 1 AB2 3 VAL L 19 THR L 24 0 SHEET 2 AB2 3 THR L 70 VAL L 75 -1 O LEU L 73 N ILE L 21 SHEET 3 AB2 3 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AB3 4 SER L 114 PHE L 118 0 SHEET 2 AB3 4 ALA L 130 PHE L 139 -1 O LEU L 135 N THR L 116 SHEET 3 AB3 4 TYR L 172 LEU L 180 -1 O SER L 176 N CYS L 134 SHEET 4 AB3 4 VAL L 159 THR L 161 -1 N GLU L 160 O TYR L 177 SHEET 1 AB4 4 SER L 114 PHE L 118 0 SHEET 2 AB4 4 ALA L 130 PHE L 139 -1 O LEU L 135 N THR L 116 SHEET 3 AB4 4 TYR L 172 LEU L 180 -1 O SER L 176 N CYS L 134 SHEET 4 AB4 4 SER L 165 LYS L 166 -1 N SER L 165 O ALA L 173 SHEET 1 AB5 4 SER L 153 VAL L 155 0 SHEET 2 AB5 4 THR L 145 ALA L 150 -1 N TRP L 148 O VAL L 155 SHEET 3 AB5 4 TYR L 191 HIS L 197 -1 O THR L 196 N THR L 145 SHEET 4 AB5 4 SER L 200 VAL L 206 -1 O VAL L 202 N VAL L 195 SSBOND 1 CYS A 379 CYS A 432 1555 1555 2.04 SSBOND 2 CYS A 480 CYS A 488 1555 1555 2.07 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.04 SSBOND 4 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 5 CYS L 134 CYS L 193 1555 1555 2.06 LINK ND2 ASN A 343 C1 NAG A 601 1555 1555 1.44 LINK ND2 ASN H 28 C1 NAG H 301 1555 1555 1.45 CISPEP 1 PHE H 145 PRO H 146 0 -4.09 CISPEP 2 GLU H 147 PRO H 148 0 -0.66 CISPEP 3 TYR L 140 PRO L 141 0 2.82 CRYST1 67.970 80.070 153.685 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014712 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012489 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006507 0.00000