HEADER LIPID BINDING PROTEIN 29-JUN-20 6XLP
TITLE STRUCTURE OF THE ESSENTIAL INNER MEMBRANE LIPOPOLYSACCHARIDE-PBGA
TITLE 2 COMPLEX
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: LPS BINDING PROTEIN;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: DUF3413 DOMAIN-CONTAINING PROTEIN,HYDROLASE OF ALKALINE
COMPND 5 PHOSPHATASE SUPERFAMILY,HYDROLASE,INNER MEMBRANE,INNER MEMBRANE
COMPND 6 PROTEIN YEJM,MEMBRANE PROTEIN,PUTATIVE HYDROLASE,PUTATIVE SULFATASE,
COMPND 7 SULFATASE;
COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;
SOURCE 3 ORGANISM_TAXID: 562;
SOURCE 4 GENE: YEJM, PBGA, YEJM_2;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS LIPOPOLYSACCHARIDE, LPS; MEMBRANE PROTEIN, LIPID BINDING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR J.PAYANDEH,T.CLAIREFEUILLE
REVDAT 3 18-OCT-23 6XLP 1 COMPND HETNAM HETSYN
REVDAT 2 02-SEP-20 6XLP 1 JRNL
REVDAT 1 26-AUG-20 6XLP 0
JRNL AUTH T.CLAIRFEUILLE,K.R.BUCHHOLZ,Q.LI,E.VERSCHUEREN,P.LIU,
JRNL AUTH 2 D.SANGARAJU,S.PARK,C.L.NOLAND,K.M.STOREK,N.N.NICKERSON,
JRNL AUTH 3 L.MARTIN,T.DELA VEGA,A.MIU,J.REEDER,M.RUIZ-GONZALEZ,D.SWEM,
JRNL AUTH 4 G.HAN,D.P.DEPONTE,M.S.HUNTER,C.GATI,S.SHAHIDI-LATHAM,M.XU,
JRNL AUTH 5 N.SKELTON,B.D.SELLERS,E.SKIPPINGTON,W.SANDOVAL,E.J.HANAN,
JRNL AUTH 6 J.PAYANDEH,S.T.RUTHERFORD
JRNL TITL STRUCTURE OF THE ESSENTIAL INNER MEMBRANE
JRNL TITL 2 LIPOPOLYSACCHARIDE-PBGA COMPLEX.
JRNL REF NATURE V. 584 479 2020
JRNL REFN ESSN 1476-4687
JRNL PMID 32788728
JRNL DOI 10.1038/S41586-020-2597-X
REMARK 2
REMARK 2 RESOLUTION. 2.00 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX DEV_2747
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.24
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350
REMARK 3 COMPLETENESS FOR RANGE (%) : 88.0
REMARK 3 NUMBER OF REFLECTIONS : 53215
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.194
REMARK 3 R VALUE (WORKING SET) : 0.193
REMARK 3 FREE R VALUE : 0.211
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.370
REMARK 3 FREE R VALUE TEST SET COUNT : 1791
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 24.2400 - 4.6922 0.97 4504 157 0.1884 0.1973
REMARK 3 2 4.6922 - 3.7287 0.99 4469 156 0.1745 0.1943
REMARK 3 3 3.7287 - 3.2586 0.97 4388 153 0.1825 0.1813
REMARK 3 4 3.2586 - 2.9613 0.98 4390 153 0.1890 0.2240
REMARK 3 5 2.9613 - 2.7493 0.96 4342 152 0.1850 0.2089
REMARK 3 6 2.7493 - 2.5874 0.96 4281 148 0.1929 0.2217
REMARK 3 7 2.5874 - 2.4580 0.95 4261 148 0.2033 0.2320
REMARK 3 8 2.4580 - 2.3511 0.92 4124 144 0.2202 0.2325
REMARK 3 9 2.3511 - 2.2606 0.84 3741 129 0.2203 0.2646
REMARK 3 10 2.2606 - 2.1827 0.79 3552 124 0.2267 0.2427
REMARK 3 11 2.1827 - 2.1145 0.76 3382 118 0.2379 0.2890
REMARK 3 12 2.1145 - 2.0541 0.70 3111 109 0.2530 0.2630
REMARK 3 13 2.0541 - 2.0000 0.64 2879 100 0.2710 0.3067
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.080
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.56
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : NULL NULL
REMARK 3 ANGLE : NULL NULL
REMARK 3 CHIRALITY : NULL NULL
REMARK 3 PLANARITY : NULL NULL
REMARK 3 DIHEDRAL : NULL NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: ( CHAIN A AND RESID 1:246 )
REMARK 3 ORIGIN FOR THE GROUP (A): 5.6720 32.6590 86.2840
REMARK 3 T TENSOR
REMARK 3 T11: 0.2671 T22: 0.1311
REMARK 3 T33: 0.2445 T12: 0.0066
REMARK 3 T13: 0.0065 T23: -0.0231
REMARK 3 L TENSOR
REMARK 3 L11: 0.9444 L22: 1.6903
REMARK 3 L33: 3.2777 L12: -0.3366
REMARK 3 L13: 0.4102 L23: -1.0461
REMARK 3 S TENSOR
REMARK 3 S11: -0.0236 S12: -0.0265 S13: -0.0447
REMARK 3 S21: 0.1550 S22: 0.0324 S23: 0.0799
REMARK 3 S31: 0.0976 S32: -0.0261 S33: -0.0172
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: ( CHAIN A AND RESID 247:586 )
REMARK 3 ORIGIN FOR THE GROUP (A): 10.8800 32.1150 42.6190
REMARK 3 T TENSOR
REMARK 3 T11: 0.2316 T22: 0.4701
REMARK 3 T33: 0.3043 T12: -0.0049
REMARK 3 T13: -0.0105 T23: -0.0559
REMARK 3 L TENSOR
REMARK 3 L11: 1.4967 L22: 2.1600
REMARK 3 L33: 2.2149 L12: -0.1893
REMARK 3 L13: -0.0923 L23: -0.3645
REMARK 3 S TENSOR
REMARK 3 S11: 0.0366 S12: 0.3136 S13: -0.0709
REMARK 3 S21: -0.1722 S22: -0.0510 S23: 0.2475
REMARK 3 S31: 0.0719 S32: 0.1146 S33: 0.0190
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6XLP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-20.
REMARK 100 THE DEPOSITION ID IS D_1000250357.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 30-MAY-17
REMARK 200 TEMPERATURE (KELVIN) : 77
REMARK 200 PH : 8
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SSRL
REMARK 200 BEAMLINE : BL12-2
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53215
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000
REMARK 200 RESOLUTION RANGE LOW (A) : 24.242
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 88.0
REMARK 200 DATA REDUNDANCY : 2.600
REMARK 200 R MERGE (I) : 0.06800
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.5000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03
REMARK 200 COMPLETENESS FOR SHELL (%) : 62.1
REMARK 200 DATA REDUNDANCY IN SHELL : 1.90
REMARK 200 R MERGE FOR SHELL (I) : 0.37900
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 5I5H
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 62.59
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.29
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: LCP WAS FORMULATED FROM MONOOLEIN
REMARK 280 (SIGMA): PHOSPHATIDYLETHANOLAMINE (E. COLI PE, AVANTI POLAR
REMARK 280 LIPIDS) 99.5:0.5% M/M MIXTURE AT 40% HYDRATION; CRYSTALLIZATION
REMARK 280 SOLUTION CONTAINED 0.1 M TRIS PH 8.0, 0.2 M AMMONIUM SULFATE, 40%
REMARK 280 PEG200, LIPIDIC CUBIC PHASE, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 85.63600
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.16400
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 85.63600
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.16400
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A -2
REMARK 465 GLY A -1
REMARK 465 SER A 0
REMARK 465 GLY A 587
REMARK 465 GLU A 588
REMARK 465 ASN A 589
REMARK 465 LEU A 590
REMARK 465 TYR A 591
REMARK 465 PHE A 592
REMARK 465 GLN A 593
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLU A 128 CG CD OE1 OE2
REMARK 470 ARG A 133 CG CD NE CZ NH1 NH2
REMARK 470 ARG A 385 CG CD NE CZ NH1 NH2
REMARK 470 GLN A 388 CG CD OE1 NE2
REMARK 470 ASP A 390 CG OD1 OD2
REMARK 470 ASP A 405 CG OD1 OD2
REMARK 470 ASP A 406 CG OD1 OD2
REMARK 470 SER A 407 OG
REMARK 470 ASN A 408 CG OD1 ND2
REMARK 470 GLN A 409 CG CD OE1 NE2
REMARK 470 GLN A 410 CG CD OE1 NE2
REMARK 470 LYS A 439 CG CD CE NZ
REMARK 470 GLU A 458 CG CD OE1 OE2
REMARK 470 LYS A 552 CG CD CE NZ
REMARK 470 ARG A 559 CG CD NE CZ NH1 NH2
REMARK 470 GLU A 561 CG CD OE1 OE2
REMARK 470 LYS A 564 CG CD CE NZ
REMARK 470 GLU A 566 CG CD OE1 OE2
REMARK 470 LYS A 567 CG CD CE NZ
REMARK 470 GLN A 569 CG CD OE1 NE2
REMARK 470 LEU A 570 CG CD1 CD2
REMARK 470 SER A 571 OG
REMARK 470 LYS A 581 CG CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O5 VJ4 B 1 O6 VJ1 B 2 2.03
REMARK 500 OD2 ASP A 240 O HOH A 701 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ILE A 140 -57.25 -122.64
REMARK 500 ALA A 214 44.47 -147.04
REMARK 500 ASP A 255 -164.89 -163.10
REMARK 500 ASN A 289 -145.96 -139.60
REMARK 500 ASN A 400 13.16 -141.70
REMARK 500 ASP A 517 119.41 -27.42
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 OLB A 610
REMARK 610 OLB A 611
REMARK 610 OLB A 612
REMARK 610 OLB A 613
REMARK 610 OLB A 614
REMARK 610 OLB A 615
REMARK 610 OLB A 616
REMARK 610 PG4 A 619
REMARK 610 3PE A 620
DBREF 6XLP A 1 586 UNP C3T3G2 C3T3G2_ECOLX 1 586
SEQADV 6XLP MET A -2 UNP C3T3G2 INITIATING METHIONINE
SEQADV 6XLP GLY A -1 UNP C3T3G2 EXPRESSION TAG
SEQADV 6XLP SER A 0 UNP C3T3G2 EXPRESSION TAG
SEQADV 6XLP GLY A 587 UNP C3T3G2 EXPRESSION TAG
SEQADV 6XLP GLU A 588 UNP C3T3G2 EXPRESSION TAG
SEQADV 6XLP ASN A 589 UNP C3T3G2 EXPRESSION TAG
SEQADV 6XLP LEU A 590 UNP C3T3G2 EXPRESSION TAG
SEQADV 6XLP TYR A 591 UNP C3T3G2 EXPRESSION TAG
SEQADV 6XLP PHE A 592 UNP C3T3G2 EXPRESSION TAG
SEQADV 6XLP GLN A 593 UNP C3T3G2 EXPRESSION TAG
SEQRES 1 A 596 MET GLY SER MET VAL THR HIS ARG GLN ARG TYR ARG GLU
SEQRES 2 A 596 LYS VAL SER GLN MET VAL SER TRP GLY HIS TRP PHE ALA
SEQRES 3 A 596 LEU PHE ASN ILE LEU LEU SER LEU VAL ILE GLY SER ARG
SEQRES 4 A 596 TYR LEU PHE ILE ALA ASP TRP PRO THR THR LEU ALA GLY
SEQRES 5 A 596 ARG ILE TYR SER TYR VAL SER ILE ILE GLY HIS PHE SER
SEQRES 6 A 596 PHE LEU VAL PHE ALA THR TYR LEU LEU ILE LEU PHE PRO
SEQRES 7 A 596 LEU THR PHE ILE VAL GLY SER GLN ARG LEU MET ARG PHE
SEQRES 8 A 596 LEU SER VAL ILE LEU ALA THR ALA GLY MET THR LEU LEU
SEQRES 9 A 596 LEU ILE ASP SER GLU VAL PHE THR ARG PHE HIS LEU HIS
SEQRES 10 A 596 LEU ASN PRO ILE VAL TRP GLN LEU VAL ILE ASN PRO ASP
SEQRES 11 A 596 GLU ASN GLU MET ALA ARG ASP TRP GLN LEU MET PHE ILE
SEQRES 12 A 596 SER VAL PRO VAL ILE LEU LEU LEU GLU LEU VAL PHE ALA
SEQRES 13 A 596 THR TRP SER TRP GLN LYS LEU ARG SER LEU THR ARG ARG
SEQRES 14 A 596 ARG ARG PHE ALA ARG PRO LEU ALA ALA PHE LEU PHE ILE
SEQRES 15 A 596 ALA PHE ILE ALA SER HIS VAL VAL TYR ILE TRP ALA ASP
SEQRES 16 A 596 ALA ASN PHE TYR ARG PRO ILE THR MET GLN ARG ALA ASN
SEQRES 17 A 596 LEU PRO LEU SER TYR PRO MET THR ALA ARG ARG PHE LEU
SEQRES 18 A 596 GLU LYS HIS GLY LEU LEU ASP ALA GLN GLU TYR GLN ARG
SEQRES 19 A 596 ARG LEU ILE GLU GLN GLY ASN PRO ASP ALA VAL SER VAL
SEQRES 20 A 596 GLN TYR PRO LEU SER GLU LEU ARG TYR ARG ASP MET GLY
SEQRES 21 A 596 THR GLY GLN ASN VAL LEU LEU ILE THR VAL ASP GLY LEU
SEQRES 22 A 596 ASN TYR SER ARG PHE GLU LYS GLN MET PRO ALA LEU ALA
SEQRES 23 A 596 GLY PHE ALA GLU GLN ASN ILE SER PHE THR ARG HIS MET
SEQRES 24 A 596 SER SER GLY ASN THR THR ASP ASN GLY ILE PHE GLY LEU
SEQRES 25 A 596 PHE TYR GLY ILE SER PRO SER TYR MET ASP GLY ILE LEU
SEQRES 26 A 596 SER THR ARG THR PRO ALA ALA LEU ILE THR ALA LEU ASN
SEQRES 27 A 596 GLN GLN GLY TYR GLN LEU GLY LEU PHE SER SER ASP GLY
SEQRES 28 A 596 PHE THR SER PRO LEU TYR ARG GLN ALA LEU LEU SER ASP
SEQRES 29 A 596 PHE SER MET PRO SER VAL ARG THR GLN SER ASP GLU GLN
SEQRES 30 A 596 THR ALA THR GLN TRP ILE ASN TRP LEU GLY ARG TYR ALA
SEQRES 31 A 596 GLN GLU ASP ASN ARG TRP PHE SER TRP VAL SER PHE ASN
SEQRES 32 A 596 GLY THR ASN ILE ASP ASP SER ASN GLN GLN ALA PHE ALA
SEQRES 33 A 596 ARG LYS TYR SER ARG ALA ALA GLY ASN VAL ASP ASP GLN
SEQRES 34 A 596 ILE ASN ARG VAL LEU ASN ALA LEU ARG ASP SER GLY LYS
SEQRES 35 A 596 LEU ASP ASN THR VAL VAL ILE ILE THR ALA GLY ARG GLY
SEQRES 36 A 596 ILE PRO LEU SER GLU GLU GLU GLU THR PHE ASP TRP SER
SEQRES 37 A 596 HIS GLY HIS LEU GLN VAL PRO LEU VAL ILE HIS TRP PRO
SEQRES 38 A 596 GLY THR PRO ALA GLN ARG ILE ASN ALA LEU THR ASP HIS
SEQRES 39 A 596 THR ASP LEU MET THR THR LEU MET GLN ARG LEU LEU HIS
SEQRES 40 A 596 VAL SER THR PRO ALA SER GLU TYR SER GLN GLY GLN ASP
SEQRES 41 A 596 LEU PHE ASN PRO GLN ARG ARG HIS TYR TRP VAL THR ALA
SEQRES 42 A 596 ALA ASP ASN ASP THR LEU ALA ILE THR THR PRO LYS LYS
SEQRES 43 A 596 THR LEU VAL LEU ASN ASN ASN GLY LYS TYR ARG THR TYR
SEQRES 44 A 596 ASN LEU ARG GLY GLU ARG VAL LYS ASP GLU LYS PRO GLN
SEQRES 45 A 596 LEU SER LEU LEU LEU GLN VAL LEU THR ASP GLU LYS ARG
SEQRES 46 A 596 PHE ILE ALA ASN GLY GLU ASN LEU TYR PHE GLN
HET VJ4 B 1 34
HET VJ1 B 2 48
HET KDO B 3 15
HET SO4 A 601 5
HET SO4 A 602 5
HET SO4 A 603 5
HET SO4 A 604 5
HET SO4 A 605 5
HET SO4 A 606 5
HET SO4 A 607 5
HET SO4 A 608 5
HET OLB A 609 25
HET OLB A 610 19
HET OLB A 611 18
HET OLB A 612 23
HET OLB A 613 14
HET OLB A 614 19
HET OLB A 615 5
HET OLB A 616 19
HET PG4 A 617 13
HET PG4 A 618 13
HET PG4 A 619 10
HET 3PE A 620 27
HETNAM VJ4 2-DEOXY-2-{[(1S,3R)-1-HYDROXY-3-(PENTANOYLOXY)
HETNAM 2 VJ4 UNDECYL]AMINO}-4-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE
HETNAM VJ1 2-DEOXY-3-O-[(1R,3R)-1,3-DIHYDROXYTETRADECYL]-2-{[(3R)-
HETNAM 2 VJ1 3-HYDROXYTETRADECANOYL]AMINO}-1-O-PHOSPHONO-ALPHA-D-
HETNAM 3 VJ1 GLUCOPYRANOSE
HETNAM KDO 3-DEOXY-ALPHA-D-MANNO-OCT-2-ULOPYRANOSONIC ACID
HETNAM SO4 SULFATE ION
HETNAM OLB (2S)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
HETNAM PG4 TETRAETHYLENE GLYCOL
HETNAM 3PE 1,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMINE
HETSYN KDO 3-DEOXY-D-MANNO-OCT-2-ULOPYRANOSONIC ACID; 2-KETO-3-
HETSYN 2 KDO DEOXY-D-MANNOOCTANOIC ACID; 3-DEOXY-ALPHA-D-MANNO-OCT-
HETSYN 3 KDO 2-ULOSONIC ACID; 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID;
HETSYN 4 KDO 3-DEOXY-MANNO-OCT-2-ULOSONIC ACID
HETSYN 3PE 3-SN-PHOSPHATIDYLETHANOLAMINE; 1,2-DIACYL-SN-GLYCERO-3-
HETSYN 2 3PE PHOSPHOETHANOLAMINE
FORMUL 2 VJ4 C22 H44 N O11 P
FORMUL 2 VJ1 C34 H68 N O12 P
FORMUL 2 KDO C8 H14 O8
FORMUL 3 SO4 8(O4 S 2-)
FORMUL 11 OLB 8(C21 H40 O4)
FORMUL 19 PG4 3(C8 H18 O5)
FORMUL 22 3PE C41 H82 N O8 P
FORMUL 23 HOH *146(H2 O)
HELIX 1 AA1 THR A 3 ALA A 41 1 39
HELIX 2 AA2 THR A 46 ILE A 72 1 27
HELIX 3 AA3 ILE A 72 PHE A 78 1 7
HELIX 4 AA4 SER A 82 HIS A 112 1 31
HELIX 5 AA5 ASN A 116 ILE A 124 1 9
HELIX 6 AA6 ASP A 127 ILE A 140 1 14
HELIX 7 AA7 ILE A 140 LYS A 159 1 20
HELIX 8 AA8 LYS A 159 ARG A 166 1 8
HELIX 9 AA9 ARG A 167 PHE A 169 5 3
HELIX 10 AB1 ALA A 170 ASN A 194 1 25
HELIX 11 AB2 TYR A 196 MET A 201 1 6
HELIX 12 AB3 ALA A 214 HIS A 221 1 8
HELIX 13 AB4 ASP A 225 GLY A 237 1 13
HELIX 14 AB5 ARG A 274 MET A 279 1 6
HELIX 15 AB6 MET A 279 GLN A 288 1 10
HELIX 16 AB7 THR A 301 GLY A 312 1 12
HELIX 17 AB8 SER A 314 SER A 316 5 3
HELIX 18 AB9 TYR A 317 ARG A 325 1 9
HELIX 19 AC1 ALA A 328 GLN A 337 1 10
HELIX 20 AC2 ASP A 347 SER A 351 5 5
HELIX 21 AC3 SER A 371 TYR A 386 1 16
HELIX 22 AC4 ASN A 408 SER A 437 1 30
HELIX 23 AC5 LYS A 439 ASP A 441 5 3
HELIX 24 AC6 GLU A 457 THR A 461 5 5
HELIX 25 AC7 SER A 465 GLN A 470 1 6
HELIX 26 AC8 HIS A 491 LEU A 502 1 12
HELIX 27 AC9 PRO A 508 TYR A 512 5 5
HELIX 28 AD1 GLN A 569 GLU A 580 1 12
SHEET 1 AA1 7 GLN A 340 SER A 345 0
SHEET 2 AA1 7 TRP A 393 PHE A 399 1 O SER A 398 N PHE A 344
SHEET 3 AA1 7 ASN A 261 LEU A 270 1 N LEU A 264 O SER A 395
SHEET 4 AA1 7 THR A 443 GLY A 452 1 O ILE A 446 N ILE A 265
SHEET 5 AA1 7 LEU A 473 HIS A 476 -1 O HIS A 476 N VAL A 445
SHEET 6 AA1 7 ILE A 290 PHE A 292 -1 N ILE A 290 O ILE A 475
SHEET 7 AA1 7 GLN A 483 ILE A 485 1 O ILE A 485 N SER A 291
SHEET 1 AA2 2 HIS A 295 MET A 296 0
SHEET 2 AA2 2 THR A 489 ASP A 490 1 O THR A 489 N MET A 296
SHEET 1 AA3 5 VAL A 528 ALA A 531 0
SHEET 2 AA3 5 THR A 535 THR A 539 -1 O ALA A 537 N ALA A 530
SHEET 3 AA3 5 THR A 544 ASN A 548 -1 O LEU A 545 N ILE A 538
SHEET 4 AA3 5 TYR A 553 TYR A 556 -1 O ARG A 554 N VAL A 546
SHEET 5 AA3 5 ARG A 562 VAL A 563 -1 O VAL A 563 N THR A 555
LINK C1 VJ4 B 1 O6 VJ1 B 2 1555 1555 1.37
LINK O6 VJ4 B 1 C2 KDO B 3 1555 1555 1.45
CISPEP 1 TYR A 246 PRO A 247 0 -10.98
CRYST1 171.272 56.328 97.359 90.00 106.45 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.005839 0.000000 0.001724 0.00000
SCALE2 0.000000 0.017753 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010709 0.00000