HEADER LIPID BINDING PROTEIN 29-JUN-20 6XLP TITLE STRUCTURE OF THE ESSENTIAL INNER MEMBRANE LIPOPOLYSACCHARIDE-PBGA TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: LPS BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DUF3413 DOMAIN-CONTAINING PROTEIN,HYDROLASE OF ALKALINE COMPND 5 PHOSPHATASE SUPERFAMILY,HYDROLASE,INNER MEMBRANE,INNER MEMBRANE COMPND 6 PROTEIN YEJM,MEMBRANE PROTEIN,PUTATIVE HYDROLASE,PUTATIVE SULFATASE, COMPND 7 SULFATASE; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: YEJM, PBGA, YEJM_2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIPOPOLYSACCHARIDE, LPS; MEMBRANE PROTEIN, LIPID BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.PAYANDEH,T.CLAIREFEUILLE REVDAT 3 18-OCT-23 6XLP 1 COMPND HETNAM HETSYN REVDAT 2 02-SEP-20 6XLP 1 JRNL REVDAT 1 26-AUG-20 6XLP 0 JRNL AUTH T.CLAIRFEUILLE,K.R.BUCHHOLZ,Q.LI,E.VERSCHUEREN,P.LIU, JRNL AUTH 2 D.SANGARAJU,S.PARK,C.L.NOLAND,K.M.STOREK,N.N.NICKERSON, JRNL AUTH 3 L.MARTIN,T.DELA VEGA,A.MIU,J.REEDER,M.RUIZ-GONZALEZ,D.SWEM, JRNL AUTH 4 G.HAN,D.P.DEPONTE,M.S.HUNTER,C.GATI,S.SHAHIDI-LATHAM,M.XU, JRNL AUTH 5 N.SKELTON,B.D.SELLERS,E.SKIPPINGTON,W.SANDOVAL,E.J.HANAN, JRNL AUTH 6 J.PAYANDEH,S.T.RUTHERFORD JRNL TITL STRUCTURE OF THE ESSENTIAL INNER MEMBRANE JRNL TITL 2 LIPOPOLYSACCHARIDE-PBGA COMPLEX. JRNL REF NATURE V. 584 479 2020 JRNL REFN ESSN 1476-4687 JRNL PMID 32788728 JRNL DOI 10.1038/S41586-020-2597-X REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2747 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 3 NUMBER OF REFLECTIONS : 53215 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.370 REMARK 3 FREE R VALUE TEST SET COUNT : 1791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.2400 - 4.6922 0.97 4504 157 0.1884 0.1973 REMARK 3 2 4.6922 - 3.7287 0.99 4469 156 0.1745 0.1943 REMARK 3 3 3.7287 - 3.2586 0.97 4388 153 0.1825 0.1813 REMARK 3 4 3.2586 - 2.9613 0.98 4390 153 0.1890 0.2240 REMARK 3 5 2.9613 - 2.7493 0.96 4342 152 0.1850 0.2089 REMARK 3 6 2.7493 - 2.5874 0.96 4281 148 0.1929 0.2217 REMARK 3 7 2.5874 - 2.4580 0.95 4261 148 0.2033 0.2320 REMARK 3 8 2.4580 - 2.3511 0.92 4124 144 0.2202 0.2325 REMARK 3 9 2.3511 - 2.2606 0.84 3741 129 0.2203 0.2646 REMARK 3 10 2.2606 - 2.1827 0.79 3552 124 0.2267 0.2427 REMARK 3 11 2.1827 - 2.1145 0.76 3382 118 0.2379 0.2890 REMARK 3 12 2.1145 - 2.0541 0.70 3111 109 0.2530 0.2630 REMARK 3 13 2.0541 - 2.0000 0.64 2879 100 0.2710 0.3067 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 1:246 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6720 32.6590 86.2840 REMARK 3 T TENSOR REMARK 3 T11: 0.2671 T22: 0.1311 REMARK 3 T33: 0.2445 T12: 0.0066 REMARK 3 T13: 0.0065 T23: -0.0231 REMARK 3 L TENSOR REMARK 3 L11: 0.9444 L22: 1.6903 REMARK 3 L33: 3.2777 L12: -0.3366 REMARK 3 L13: 0.4102 L23: -1.0461 REMARK 3 S TENSOR REMARK 3 S11: -0.0236 S12: -0.0265 S13: -0.0447 REMARK 3 S21: 0.1550 S22: 0.0324 S23: 0.0799 REMARK 3 S31: 0.0976 S32: -0.0261 S33: -0.0172 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 247:586 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8800 32.1150 42.6190 REMARK 3 T TENSOR REMARK 3 T11: 0.2316 T22: 0.4701 REMARK 3 T33: 0.3043 T12: -0.0049 REMARK 3 T13: -0.0105 T23: -0.0559 REMARK 3 L TENSOR REMARK 3 L11: 1.4967 L22: 2.1600 REMARK 3 L33: 2.2149 L12: -0.1893 REMARK 3 L13: -0.0923 L23: -0.3645 REMARK 3 S TENSOR REMARK 3 S11: 0.0366 S12: 0.3136 S13: -0.0709 REMARK 3 S21: -0.1722 S22: -0.0510 S23: 0.2475 REMARK 3 S31: 0.0719 S32: 0.1146 S33: 0.0190 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XLP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000250357. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53215 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 24.242 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.37900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5I5H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LCP WAS FORMULATED FROM MONOOLEIN REMARK 280 (SIGMA): PHOSPHATIDYLETHANOLAMINE (E. COLI PE, AVANTI POLAR REMARK 280 LIPIDS) 99.5:0.5% M/M MIXTURE AT 40% HYDRATION; CRYSTALLIZATION REMARK 280 SOLUTION CONTAINED 0.1 M TRIS PH 8.0, 0.2 M AMMONIUM SULFATE, 40% REMARK 280 PEG200, LIPIDIC CUBIC PHASE, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 85.63600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.16400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 85.63600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.16400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLY A 587 REMARK 465 GLU A 588 REMARK 465 ASN A 589 REMARK 465 LEU A 590 REMARK 465 TYR A 591 REMARK 465 PHE A 592 REMARK 465 GLN A 593 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 128 CG CD OE1 OE2 REMARK 470 ARG A 133 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 385 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 388 CG CD OE1 NE2 REMARK 470 ASP A 390 CG OD1 OD2 REMARK 470 ASP A 405 CG OD1 OD2 REMARK 470 ASP A 406 CG OD1 OD2 REMARK 470 SER A 407 OG REMARK 470 ASN A 408 CG OD1 ND2 REMARK 470 GLN A 409 CG CD OE1 NE2 REMARK 470 GLN A 410 CG CD OE1 NE2 REMARK 470 LYS A 439 CG CD CE NZ REMARK 470 GLU A 458 CG CD OE1 OE2 REMARK 470 LYS A 552 CG CD CE NZ REMARK 470 ARG A 559 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 561 CG CD OE1 OE2 REMARK 470 LYS A 564 CG CD CE NZ REMARK 470 GLU A 566 CG CD OE1 OE2 REMARK 470 LYS A 567 CG CD CE NZ REMARK 470 GLN A 569 CG CD OE1 NE2 REMARK 470 LEU A 570 CG CD1 CD2 REMARK 470 SER A 571 OG REMARK 470 LYS A 581 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O5 VJ4 B 1 O6 VJ1 B 2 2.03 REMARK 500 OD2 ASP A 240 O HOH A 701 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 140 -57.25 -122.64 REMARK 500 ALA A 214 44.47 -147.04 REMARK 500 ASP A 255 -164.89 -163.10 REMARK 500 ASN A 289 -145.96 -139.60 REMARK 500 ASN A 400 13.16 -141.70 REMARK 500 ASP A 517 119.41 -27.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLB A 610 REMARK 610 OLB A 611 REMARK 610 OLB A 612 REMARK 610 OLB A 613 REMARK 610 OLB A 614 REMARK 610 OLB A 615 REMARK 610 OLB A 616 REMARK 610 PG4 A 619 REMARK 610 3PE A 620 DBREF 6XLP A 1 586 UNP C3T3G2 C3T3G2_ECOLX 1 586 SEQADV 6XLP MET A -2 UNP C3T3G2 INITIATING METHIONINE SEQADV 6XLP GLY A -1 UNP C3T3G2 EXPRESSION TAG SEQADV 6XLP SER A 0 UNP C3T3G2 EXPRESSION TAG SEQADV 6XLP GLY A 587 UNP C3T3G2 EXPRESSION TAG SEQADV 6XLP GLU A 588 UNP C3T3G2 EXPRESSION TAG SEQADV 6XLP ASN A 589 UNP C3T3G2 EXPRESSION TAG SEQADV 6XLP LEU A 590 UNP C3T3G2 EXPRESSION TAG SEQADV 6XLP TYR A 591 UNP C3T3G2 EXPRESSION TAG SEQADV 6XLP PHE A 592 UNP C3T3G2 EXPRESSION TAG SEQADV 6XLP GLN A 593 UNP C3T3G2 EXPRESSION TAG SEQRES 1 A 596 MET GLY SER MET VAL THR HIS ARG GLN ARG TYR ARG GLU SEQRES 2 A 596 LYS VAL SER GLN MET VAL SER TRP GLY HIS TRP PHE ALA SEQRES 3 A 596 LEU PHE ASN ILE LEU LEU SER LEU VAL ILE GLY SER ARG SEQRES 4 A 596 TYR LEU PHE ILE ALA ASP TRP PRO THR THR LEU ALA GLY SEQRES 5 A 596 ARG ILE TYR SER TYR VAL SER ILE ILE GLY HIS PHE SER SEQRES 6 A 596 PHE LEU VAL PHE ALA THR TYR LEU LEU ILE LEU PHE PRO SEQRES 7 A 596 LEU THR PHE ILE VAL GLY SER GLN ARG LEU MET ARG PHE SEQRES 8 A 596 LEU SER VAL ILE LEU ALA THR ALA GLY MET THR LEU LEU SEQRES 9 A 596 LEU ILE ASP SER GLU VAL PHE THR ARG PHE HIS LEU HIS SEQRES 10 A 596 LEU ASN PRO ILE VAL TRP GLN LEU VAL ILE ASN PRO ASP SEQRES 11 A 596 GLU ASN GLU MET ALA ARG ASP TRP GLN LEU MET PHE ILE SEQRES 12 A 596 SER VAL PRO VAL ILE LEU LEU LEU GLU LEU VAL PHE ALA SEQRES 13 A 596 THR TRP SER TRP GLN LYS LEU ARG SER LEU THR ARG ARG SEQRES 14 A 596 ARG ARG PHE ALA ARG PRO LEU ALA ALA PHE LEU PHE ILE SEQRES 15 A 596 ALA PHE ILE ALA SER HIS VAL VAL TYR ILE TRP ALA ASP SEQRES 16 A 596 ALA ASN PHE TYR ARG PRO ILE THR MET GLN ARG ALA ASN SEQRES 17 A 596 LEU PRO LEU SER TYR PRO MET THR ALA ARG ARG PHE LEU SEQRES 18 A 596 GLU LYS HIS GLY LEU LEU ASP ALA GLN GLU TYR GLN ARG SEQRES 19 A 596 ARG LEU ILE GLU GLN GLY ASN PRO ASP ALA VAL SER VAL SEQRES 20 A 596 GLN TYR PRO LEU SER GLU LEU ARG TYR ARG ASP MET GLY SEQRES 21 A 596 THR GLY GLN ASN VAL LEU LEU ILE THR VAL ASP GLY LEU SEQRES 22 A 596 ASN TYR SER ARG PHE GLU LYS GLN MET PRO ALA LEU ALA SEQRES 23 A 596 GLY PHE ALA GLU GLN ASN ILE SER PHE THR ARG HIS MET SEQRES 24 A 596 SER SER GLY ASN THR THR ASP ASN GLY ILE PHE GLY LEU SEQRES 25 A 596 PHE TYR GLY ILE SER PRO SER TYR MET ASP GLY ILE LEU SEQRES 26 A 596 SER THR ARG THR PRO ALA ALA LEU ILE THR ALA LEU ASN SEQRES 27 A 596 GLN GLN GLY TYR GLN LEU GLY LEU PHE SER SER ASP GLY SEQRES 28 A 596 PHE THR SER PRO LEU TYR ARG GLN ALA LEU LEU SER ASP SEQRES 29 A 596 PHE SER MET PRO SER VAL ARG THR GLN SER ASP GLU GLN SEQRES 30 A 596 THR ALA THR GLN TRP ILE ASN TRP LEU GLY ARG TYR ALA SEQRES 31 A 596 GLN GLU ASP ASN ARG TRP PHE SER TRP VAL SER PHE ASN SEQRES 32 A 596 GLY THR ASN ILE ASP ASP SER ASN GLN GLN ALA PHE ALA SEQRES 33 A 596 ARG LYS TYR SER ARG ALA ALA GLY ASN VAL ASP ASP GLN SEQRES 34 A 596 ILE ASN ARG VAL LEU ASN ALA LEU ARG ASP SER GLY LYS SEQRES 35 A 596 LEU ASP ASN THR VAL VAL ILE ILE THR ALA GLY ARG GLY SEQRES 36 A 596 ILE PRO LEU SER GLU GLU GLU GLU THR PHE ASP TRP SER SEQRES 37 A 596 HIS GLY HIS LEU GLN VAL PRO LEU VAL ILE HIS TRP PRO SEQRES 38 A 596 GLY THR PRO ALA GLN ARG ILE ASN ALA LEU THR ASP HIS SEQRES 39 A 596 THR ASP LEU MET THR THR LEU MET GLN ARG LEU LEU HIS SEQRES 40 A 596 VAL SER THR PRO ALA SER GLU TYR SER GLN GLY GLN ASP SEQRES 41 A 596 LEU PHE ASN PRO GLN ARG ARG HIS TYR TRP VAL THR ALA SEQRES 42 A 596 ALA ASP ASN ASP THR LEU ALA ILE THR THR PRO LYS LYS SEQRES 43 A 596 THR LEU VAL LEU ASN ASN ASN GLY LYS TYR ARG THR TYR SEQRES 44 A 596 ASN LEU ARG GLY GLU ARG VAL LYS ASP GLU LYS PRO GLN SEQRES 45 A 596 LEU SER LEU LEU LEU GLN VAL LEU THR ASP GLU LYS ARG SEQRES 46 A 596 PHE ILE ALA ASN GLY GLU ASN LEU TYR PHE GLN HET VJ4 B 1 34 HET VJ1 B 2 48 HET KDO B 3 15 HET SO4 A 601 5 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HET SO4 A 605 5 HET SO4 A 606 5 HET SO4 A 607 5 HET SO4 A 608 5 HET OLB A 609 25 HET OLB A 610 19 HET OLB A 611 18 HET OLB A 612 23 HET OLB A 613 14 HET OLB A 614 19 HET OLB A 615 5 HET OLB A 616 19 HET PG4 A 617 13 HET PG4 A 618 13 HET PG4 A 619 10 HET 3PE A 620 27 HETNAM VJ4 2-DEOXY-2-{[(1S,3R)-1-HYDROXY-3-(PENTANOYLOXY) HETNAM 2 VJ4 UNDECYL]AMINO}-4-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE HETNAM VJ1 2-DEOXY-3-O-[(1R,3R)-1,3-DIHYDROXYTETRADECYL]-2-{[(3R)- HETNAM 2 VJ1 3-HYDROXYTETRADECANOYL]AMINO}-1-O-PHOSPHONO-ALPHA-D- HETNAM 3 VJ1 GLUCOPYRANOSE HETNAM KDO 3-DEOXY-ALPHA-D-MANNO-OCT-2-ULOPYRANOSONIC ACID HETNAM SO4 SULFATE ION HETNAM OLB (2S)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM 3PE 1,2-DISTEAROYL-SN-GLYCEROPHOSPHOETHANOLAMINE HETSYN KDO 3-DEOXY-D-MANNO-OCT-2-ULOPYRANOSONIC ACID; 2-KETO-3- HETSYN 2 KDO DEOXY-D-MANNOOCTANOIC ACID; 3-DEOXY-ALPHA-D-MANNO-OCT- HETSYN 3 KDO 2-ULOSONIC ACID; 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID; HETSYN 4 KDO 3-DEOXY-MANNO-OCT-2-ULOSONIC ACID HETSYN 3PE 3-SN-PHOSPHATIDYLETHANOLAMINE; 1,2-DIACYL-SN-GLYCERO-3- HETSYN 2 3PE PHOSPHOETHANOLAMINE FORMUL 2 VJ4 C22 H44 N O11 P FORMUL 2 VJ1 C34 H68 N O12 P FORMUL 2 KDO C8 H14 O8 FORMUL 3 SO4 8(O4 S 2-) FORMUL 11 OLB 8(C21 H40 O4) FORMUL 19 PG4 3(C8 H18 O5) FORMUL 22 3PE C41 H82 N O8 P FORMUL 23 HOH *146(H2 O) HELIX 1 AA1 THR A 3 ALA A 41 1 39 HELIX 2 AA2 THR A 46 ILE A 72 1 27 HELIX 3 AA3 ILE A 72 PHE A 78 1 7 HELIX 4 AA4 SER A 82 HIS A 112 1 31 HELIX 5 AA5 ASN A 116 ILE A 124 1 9 HELIX 6 AA6 ASP A 127 ILE A 140 1 14 HELIX 7 AA7 ILE A 140 LYS A 159 1 20 HELIX 8 AA8 LYS A 159 ARG A 166 1 8 HELIX 9 AA9 ARG A 167 PHE A 169 5 3 HELIX 10 AB1 ALA A 170 ASN A 194 1 25 HELIX 11 AB2 TYR A 196 MET A 201 1 6 HELIX 12 AB3 ALA A 214 HIS A 221 1 8 HELIX 13 AB4 ASP A 225 GLY A 237 1 13 HELIX 14 AB5 ARG A 274 MET A 279 1 6 HELIX 15 AB6 MET A 279 GLN A 288 1 10 HELIX 16 AB7 THR A 301 GLY A 312 1 12 HELIX 17 AB8 SER A 314 SER A 316 5 3 HELIX 18 AB9 TYR A 317 ARG A 325 1 9 HELIX 19 AC1 ALA A 328 GLN A 337 1 10 HELIX 20 AC2 ASP A 347 SER A 351 5 5 HELIX 21 AC3 SER A 371 TYR A 386 1 16 HELIX 22 AC4 ASN A 408 SER A 437 1 30 HELIX 23 AC5 LYS A 439 ASP A 441 5 3 HELIX 24 AC6 GLU A 457 THR A 461 5 5 HELIX 25 AC7 SER A 465 GLN A 470 1 6 HELIX 26 AC8 HIS A 491 LEU A 502 1 12 HELIX 27 AC9 PRO A 508 TYR A 512 5 5 HELIX 28 AD1 GLN A 569 GLU A 580 1 12 SHEET 1 AA1 7 GLN A 340 SER A 345 0 SHEET 2 AA1 7 TRP A 393 PHE A 399 1 O SER A 398 N PHE A 344 SHEET 3 AA1 7 ASN A 261 LEU A 270 1 N LEU A 264 O SER A 395 SHEET 4 AA1 7 THR A 443 GLY A 452 1 O ILE A 446 N ILE A 265 SHEET 5 AA1 7 LEU A 473 HIS A 476 -1 O HIS A 476 N VAL A 445 SHEET 6 AA1 7 ILE A 290 PHE A 292 -1 N ILE A 290 O ILE A 475 SHEET 7 AA1 7 GLN A 483 ILE A 485 1 O ILE A 485 N SER A 291 SHEET 1 AA2 2 HIS A 295 MET A 296 0 SHEET 2 AA2 2 THR A 489 ASP A 490 1 O THR A 489 N MET A 296 SHEET 1 AA3 5 VAL A 528 ALA A 531 0 SHEET 2 AA3 5 THR A 535 THR A 539 -1 O ALA A 537 N ALA A 530 SHEET 3 AA3 5 THR A 544 ASN A 548 -1 O LEU A 545 N ILE A 538 SHEET 4 AA3 5 TYR A 553 TYR A 556 -1 O ARG A 554 N VAL A 546 SHEET 5 AA3 5 ARG A 562 VAL A 563 -1 O VAL A 563 N THR A 555 LINK C1 VJ4 B 1 O6 VJ1 B 2 1555 1555 1.37 LINK O6 VJ4 B 1 C2 KDO B 3 1555 1555 1.45 CISPEP 1 TYR A 246 PRO A 247 0 -10.98 CRYST1 171.272 56.328 97.359 90.00 106.45 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005839 0.000000 0.001724 0.00000 SCALE2 0.000000 0.017753 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010709 0.00000