HEADER OXIDOREDUCTASE 29-JUN-20 6XLT TITLE THE 1.48 ANGSTROM CRYSTAL STRUCTURE OF EVOLVED GALACTOSE OXIDASE TITLE 2 VARIANT A3.E7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALACTOSE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GOASE; COMPND 5 EC: 1.1.3.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GIBBERELLA ZEAE; SOURCE 3 ORGANISM_COMMON: WHEAT HEAD BLIGHT FUNGUS; SOURCE 4 ORGANISM_TAXID: 5518; SOURCE 5 GENE: GAOA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYS-TYR COFACTOR, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.LIU,J.LI REVDAT 2 18-OCT-23 6XLT 1 REMARK REVDAT 1 03-FEB-21 6XLT 0 JRNL AUTH J.LI,I.DAVIS,W.P.GRIFFITH,A.LIU JRNL TITL FORMATION OF MONOFLUORINATED RADICAL COFACTOR IN GALACTOSE JRNL TITL 2 OXIDASE THROUGH COPPER-MEDIATED C-F BOND SCISSION. JRNL REF J.AM.CHEM.SOC. V. 142 18753 2020 JRNL REFN ESSN 1520-5126 JRNL PMID 33091303 JRNL DOI 10.1021/JACS.0C08992 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 108106 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.850 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.4610 - 3.5603 0.99 7690 145 0.1194 0.1384 REMARK 3 2 3.5603 - 2.8267 1.00 7654 144 0.1357 0.1396 REMARK 3 3 2.8267 - 2.4697 1.00 7620 144 0.1478 0.1854 REMARK 3 4 2.4697 - 2.2439 1.00 7612 143 0.1477 0.1864 REMARK 3 5 2.2439 - 2.0832 1.00 7591 144 0.1451 0.1712 REMARK 3 6 2.0832 - 1.9604 1.00 7597 143 0.1464 0.1684 REMARK 3 7 1.9604 - 1.8622 1.00 7583 142 0.1512 0.1737 REMARK 3 8 1.8622 - 1.7812 1.00 7572 143 0.1568 0.1861 REMARK 3 9 1.7812 - 1.7126 1.00 7598 143 0.1688 0.1836 REMARK 3 10 1.7126 - 1.6535 1.00 7544 142 0.1766 0.1932 REMARK 3 11 1.6535 - 1.6018 1.00 7600 144 0.1958 0.2427 REMARK 3 12 1.6018 - 1.5560 1.00 7588 142 0.2228 0.2503 REMARK 3 13 1.5560 - 1.5151 1.00 7558 143 0.2461 0.2493 REMARK 3 14 1.5151 - 1.4781 0.97 7299 138 0.2718 0.3093 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5113 REMARK 3 ANGLE : 1.067 7003 REMARK 3 CHIRALITY : 0.045 760 REMARK 3 PLANARITY : 0.006 927 REMARK 3 DIHEDRAL : 11.969 1844 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -35.7023 -8.0380 20.4101 REMARK 3 T TENSOR REMARK 3 T11: 0.1334 T22: 0.1324 REMARK 3 T33: 0.1345 T12: 0.0190 REMARK 3 T13: -0.0025 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.4339 L22: 0.5014 REMARK 3 L33: 0.7534 L12: -0.0669 REMARK 3 L13: -0.1352 L23: 0.1048 REMARK 3 S TENSOR REMARK 3 S11: 0.0104 S12: 0.0522 S13: -0.0009 REMARK 3 S21: -0.0842 S22: -0.0113 S23: -0.0402 REMARK 3 S31: 0.0111 S32: 0.0462 S33: -0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XLT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1000250116. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97919 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 108128 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.478 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.95900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1GOG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 6000, 0.1 M CACL2, 5% REMARK 280 GLYCEROL, 10 MM N-ACETYLGLUCOSAMINE AND 50 MM ACETIC ACID, PH REMARK 280 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.64100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.56000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.64100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.56000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1752 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 LEU A 640 REMARK 465 GLU A 641 REMARK 465 HIS A 642 REMARK 465 HIS A 643 REMARK 465 HIS A 644 REMARK 465 HIS A 645 REMARK 465 HIS A 646 REMARK 465 HIS A 647 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 228 CE1 TYR A 272 1.77 REMARK 500 ND2 ASN A 413 O HOH A 1101 1.86 REMARK 500 O HOH A 1347 O HOH A 1822 2.12 REMARK 500 O1 GOL A 1005 O HOH A 1102 2.13 REMARK 500 O HOH A 1537 O HOH A 1655 2.15 REMARK 500 O HOH A 1655 O HOH A 1821 2.15 REMARK 500 O ILE A 5 O HOH A 1103 2.16 REMARK 500 NZ LYS A 366 O HOH A 1104 2.16 REMARK 500 O HOH A 1217 O HOH A 1537 2.16 REMARK 500 O HOH A 1413 O HOH A 1493 2.19 REMARK 500 O HOH A 1397 O HOH A 1681 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1157 O HOH A 1646 4456 1.98 REMARK 500 O HOH A 1169 O HOH A 1822 2556 2.05 REMARK 500 O HOH A 1646 O HOH A 1851 4446 2.06 REMARK 500 O HOH A 1129 O HOH A 1809 3455 2.06 REMARK 500 O HOH A 1792 O HOH A 1842 2455 2.07 REMARK 500 O HOH A 1454 O HOH A 1851 4446 2.10 REMARK 500 O HOH A 1846 O HOH A 1850 2455 2.13 REMARK 500 O HOH A 1472 O HOH A 1842 2455 2.15 REMARK 500 O HOH A 1704 O HOH A 1813 2556 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 2 -159.39 -163.27 REMARK 500 SER A 2 -161.88 -161.22 REMARK 500 LYS A 60 -47.08 78.23 REMARK 500 SER A 187 -92.41 -112.16 REMARK 500 SER A 188 -150.30 -160.17 REMARK 500 ASP A 192 15.75 -140.02 REMARK 500 LEU A 312 74.88 -119.64 REMARK 500 TRP A 340 -159.64 -144.14 REMARK 500 SER A 432 -132.16 50.81 REMARK 500 ASP A 466 33.83 -94.42 REMARK 500 THR A 468 47.50 30.32 REMARK 500 ALA A 494 -124.47 -108.88 REMARK 500 LEU A 514 64.23 63.44 REMARK 500 ASP A 517 42.12 -86.56 REMARK 500 ASP A 517 37.83 -82.98 REMARK 500 THR A 582 -7.14 82.68 REMARK 500 VAL A 612 -61.53 -90.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1850 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A1851 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A1852 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A1853 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A1854 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A1855 DISTANCE = 8.34 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 29 O REMARK 620 2 ASP A 32 OD1 77.5 REMARK 620 3 ASN A 34 O 167.0 93.9 REMARK 620 4 THR A 37 O 92.4 143.8 88.9 REMARK 620 5 THR A 37 OG1 87.3 69.9 80.6 75.0 REMARK 620 6 ALA A 141 O 82.4 134.8 110.5 76.3 148.9 REMARK 620 7 GLU A 142 OE2 102.2 71.2 83.9 144.9 136.7 74.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A1001 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 272 OH REMARK 620 2 HIS A 496 NE2 167.6 REMARK 620 3 HIS A 581 NE2 101.8 90.6 REMARK 620 4 HOH A1169 O 72.5 95.2 170.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1005 DBREF 6XLT A 1 639 UNP P0CS93 GAOA_GIBZA 42 680 SEQADV 6XLT MET A 0 UNP P0CS93 INITIATING METHIONINE SEQADV 6XLT PRO A 10 UNP P0CS93 SER 51 VARIANT SEQADV 6XLT VAL A 70 UNP P0CS93 MET 111 VARIANT SEQADV 6XLT GLU A 195 UNP P0CS93 GLY 236 VARIANT SEQADV 6XLT ALA A 494 UNP P0CS93 VAL 535 VARIANT SEQADV 6XLT ASP A 535 UNP P0CS93 ASN 576 VARIANT SEQADV 6XLT LEU A 640 UNP P0CS93 EXPRESSION TAG SEQADV 6XLT GLU A 641 UNP P0CS93 EXPRESSION TAG SEQADV 6XLT HIS A 642 UNP P0CS93 EXPRESSION TAG SEQADV 6XLT HIS A 643 UNP P0CS93 EXPRESSION TAG SEQADV 6XLT HIS A 644 UNP P0CS93 EXPRESSION TAG SEQADV 6XLT HIS A 645 UNP P0CS93 EXPRESSION TAG SEQADV 6XLT HIS A 646 UNP P0CS93 EXPRESSION TAG SEQADV 6XLT HIS A 647 UNP P0CS93 EXPRESSION TAG SEQRES 1 A 648 MET ALA SER ALA PRO ILE GLY SER ALA ILE PRO ARG ASN SEQRES 2 A 648 ASN TRP ALA VAL THR CYS ASP SER ALA GLN SER GLY ASN SEQRES 3 A 648 GLU CYS ASN LYS ALA ILE ASP GLY ASN LYS ASP THR PHE SEQRES 4 A 648 TRP HIS THR PHE TYR GLY ALA ASN GLY ASP PRO LYS PRO SEQRES 5 A 648 PRO HIS THR TYR THR ILE ASP MET LYS THR THR GLN ASN SEQRES 6 A 648 VAL ASN GLY LEU SER VAL LEU PRO ARG GLN ASP GLY ASN SEQRES 7 A 648 GLN ASN GLY TRP ILE GLY ARG HIS GLU VAL TYR LEU SER SEQRES 8 A 648 SER ASP GLY THR ASN TRP GLY SER PRO VAL ALA SER GLY SEQRES 9 A 648 SER TRP PHE ALA ASP SER THR THR LYS TYR SER ASN PHE SEQRES 10 A 648 GLU THR ARG PRO ALA ARG TYR VAL ARG LEU VAL ALA ILE SEQRES 11 A 648 THR GLU ALA ASN GLY GLN PRO TRP THR SER ILE ALA GLU SEQRES 12 A 648 ILE ASN VAL PHE GLN ALA SER SER TYR THR ALA PRO GLN SEQRES 13 A 648 PRO GLY LEU GLY ARG TRP GLY PRO THR ILE ASP LEU PRO SEQRES 14 A 648 ILE VAL PRO ALA ALA ALA ALA ILE GLU PRO THR SER GLY SEQRES 15 A 648 ARG VAL LEU MET TRP SER SER TYR ARG ASN ASP ALA PHE SEQRES 16 A 648 GLU GLY SER PRO GLY GLY ILE THR LEU THR SER SER TRP SEQRES 17 A 648 ASP PRO SER THR GLY ILE VAL SER ASP ARG THR VAL THR SEQRES 18 A 648 VAL THR LYS HIS ASP MET PHE CYS PRO GLY ILE SER MET SEQRES 19 A 648 ASP GLY ASN GLY GLN ILE VAL VAL THR GLY GLY ASN ASP SEQRES 20 A 648 ALA LYS LYS THR SER LEU TYR ASP SER SER SER ASP SER SEQRES 21 A 648 TRP ILE PRO GLY PRO ASP MET GLN VAL ALA ARG GLY TYR SEQRES 22 A 648 GLN SER SER ALA THR MET SER ASP GLY ARG VAL PHE THR SEQRES 23 A 648 ILE GLY GLY SER TRP SER GLY GLY VAL PHE GLU LYS ASN SEQRES 24 A 648 GLY GLU VAL TYR SER PRO SER SER LYS THR TRP THR SER SEQRES 25 A 648 LEU PRO ASN ALA LYS VAL ASN PRO MET LEU THR ALA ASP SEQRES 26 A 648 LYS GLN GLY LEU TYR ARG SER ASP ASN HIS ALA TRP LEU SEQRES 27 A 648 PHE GLY TRP LYS LYS GLY SER VAL PHE GLN ALA GLY PRO SEQRES 28 A 648 SER THR ALA MET ASN TRP TYR TYR THR SER GLY SER GLY SEQRES 29 A 648 ASP VAL LYS SER ALA GLY LYS ARG GLN SER ASN ARG GLY SEQRES 30 A 648 VAL ALA PRO ASP ALA MET CYS GLY ASN ALA VAL MET TYR SEQRES 31 A 648 ASP ALA VAL LYS GLY LYS ILE LEU THR PHE GLY GLY SER SEQRES 32 A 648 PRO ASP TYR GLN ASP SER ASP ALA THR THR ASN ALA HIS SEQRES 33 A 648 ILE ILE THR LEU GLY GLU PRO GLY THR SER PRO ASN THR SEQRES 34 A 648 VAL PHE ALA SER ASN GLY LEU TYR PHE ALA ARG THR PHE SEQRES 35 A 648 HIS THR SER VAL VAL LEU PRO ASP GLY SER THR PHE ILE SEQRES 36 A 648 THR GLY GLY GLN ARG ARG GLY ILE PRO PHE GLU ASP SER SEQRES 37 A 648 THR PRO VAL PHE THR PRO GLU ILE TYR VAL PRO GLU GLN SEQRES 38 A 648 ASP THR PHE TYR LYS GLN ASN PRO ASN SER ILE VAL ARG SEQRES 39 A 648 ALA TYR HIS SER ILE SER LEU LEU LEU PRO ASP GLY ARG SEQRES 40 A 648 VAL PHE ASN GLY GLY GLY GLY LEU CYS GLY ASP CYS THR SEQRES 41 A 648 THR ASN HIS PHE ASP ALA GLN ILE PHE THR PRO ASN TYR SEQRES 42 A 648 LEU TYR ASP SER ASN GLY ASN LEU ALA THR ARG PRO LYS SEQRES 43 A 648 ILE THR ARG THR SER THR GLN SER VAL LYS VAL GLY GLY SEQRES 44 A 648 ARG ILE THR ILE SER THR ASP SER SER ILE SER LYS ALA SEQRES 45 A 648 SER LEU ILE ARG TYR GLY THR ALA THR HIS THR VAL ASN SEQRES 46 A 648 THR ASP GLN ARG ARG ILE PRO LEU THR LEU THR ASN ASN SEQRES 47 A 648 GLY GLY ASN SER TYR SER PHE GLN VAL PRO SER ASP SER SEQRES 48 A 648 GLY VAL ALA LEU PRO GLY TYR TRP MET LEU PHE VAL MET SEQRES 49 A 648 ASN SER ALA GLY VAL PRO SER VAL ALA SER THR ILE ARG SEQRES 50 A 648 VAL THR GLN LEU GLU HIS HIS HIS HIS HIS HIS HET CU A1001 1 HET CA A1002 1 HET ACT A1003 4 HET ACT A1004 4 HET GOL A1005 6 HETNAM CU COPPER (II) ION HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CU CU 2+ FORMUL 3 CA CA 2+ FORMUL 4 ACT 2(C2 H3 O2 1-) FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *755(H2 O) HELIX 1 AA1 GLU A 26 ILE A 31 5 6 HELIX 2 AA2 TYR A 43 GLY A 47 5 5 HELIX 3 AA3 VAL A 317 LEU A 321 5 5 HELIX 4 AA4 GLY A 327 ASP A 332 1 6 HELIX 5 AA5 LYS A 341 GLY A 343 5 3 HELIX 6 AA6 PRO A 530 TYR A 534 5 5 SHEET 1 AA1 4 SER A 7 ALA A 8 0 SHEET 2 AA1 4 GLU A 142 GLN A 147 -1 O GLN A 147 N SER A 7 SHEET 3 AA1 4 HIS A 53 LEU A 71 -1 N LEU A 71 O GLU A 142 SHEET 4 AA1 4 ALA A 15 CYS A 18 -1 N ALA A 15 O ASP A 58 SHEET 1 AA210 SER A 7 ALA A 8 0 SHEET 2 AA210 GLU A 142 GLN A 147 -1 O GLN A 147 N SER A 7 SHEET 3 AA210 HIS A 53 LEU A 71 -1 N LEU A 71 O GLU A 142 SHEET 4 AA210 LYS A 112 ALA A 128 -1 O VAL A 124 N ILE A 57 SHEET 5 AA210 ARG A 84 SER A 90 -1 N GLU A 86 O VAL A 127 SHEET 6 AA210 ALA A 101 SER A 104 -1 O ALA A 101 N VAL A 87 SHEET 7 AA210 ARG A 160 ASP A 166 1 O ASP A 166 N SER A 102 SHEET 8 AA210 ASP A 524 THR A 529 -1 O THR A 529 N ARG A 160 SHEET 9 AA210 VAL A 507 GLY A 511 -1 N ASN A 509 O GLN A 526 SHEET 10 AA210 SER A 497 LEU A 501 -1 N LEU A 500 O PHE A 508 SHEET 1 AA3 2 TRP A 39 HIS A 40 0 SHEET 2 AA3 2 SER A 139 ILE A 140 -1 O ILE A 140 N TRP A 39 SHEET 1 AA4 5 VAL A 214 VAL A 219 0 SHEET 2 AA4 5 THR A 202 TRP A 207 -1 N THR A 202 O VAL A 219 SHEET 3 AA4 5 VAL A 183 TRP A 186 -1 N VAL A 183 O TRP A 207 SHEET 4 AA4 5 ALA A 173 ILE A 176 -1 N ALA A 175 O LEU A 184 SHEET 5 AA4 5 THR A 578 THR A 580 -1 O ALA A 579 N ALA A 174 SHEET 1 AA5 4 GLY A 230 MET A 233 0 SHEET 2 AA5 4 GLN A 238 THR A 242 -1 O VAL A 240 N SER A 232 SHEET 3 AA5 4 THR A 250 ASP A 254 -1 O SER A 251 N VAL A 241 SHEET 4 AA5 4 SER A 259 PRO A 262 -1 O SER A 259 N ASP A 254 SHEET 1 AA6 4 SER A 274 THR A 277 0 SHEET 2 AA6 4 VAL A 283 ILE A 286 -1 O PHE A 284 N ALA A 276 SHEET 3 AA6 4 GLY A 299 SER A 303 -1 O TYR A 302 N VAL A 283 SHEET 4 AA6 4 THR A 308 LEU A 312 -1 O LEU A 312 N GLY A 299 SHEET 1 AA7 4 LEU A 337 GLY A 339 0 SHEET 2 AA7 4 VAL A 345 GLN A 347 -1 O PHE A 346 N PHE A 338 SHEET 3 AA7 4 ALA A 353 TYR A 358 -1 O ASN A 355 N GLN A 347 SHEET 4 AA7 4 ASP A 364 LYS A 370 -1 O LYS A 366 N TRP A 356 SHEET 1 AA8 2 GLN A 372 SER A 373 0 SHEET 2 AA8 2 GLY A 376 VAL A 377 -1 O GLY A 376 N SER A 373 SHEET 1 AA9 4 ASN A 385 ASP A 390 0 SHEET 2 AA9 4 LYS A 395 PHE A 399 -1 O LEU A 397 N VAL A 387 SHEET 3 AA9 4 ALA A 414 THR A 418 -1 O ILE A 417 N ILE A 396 SHEET 4 AA9 4 ASN A 427 PHE A 430 -1 O VAL A 429 N ILE A 416 SHEET 1 AB1 4 THR A 443 VAL A 446 0 SHEET 2 AB1 4 THR A 452 THR A 455 -1 O THR A 455 N THR A 443 SHEET 3 AB1 4 GLU A 474 VAL A 477 -1 O GLU A 474 N ILE A 454 SHEET 4 AB1 4 THR A 482 LYS A 485 -1 O THR A 482 N VAL A 477 SHEET 1 AB2 4 ILE A 546 THR A 549 0 SHEET 2 AB2 4 ARG A 559 THR A 564 -1 O SER A 563 N ARG A 548 SHEET 3 AB2 4 SER A 601 GLN A 605 -1 O TYR A 602 N ILE A 562 SHEET 4 AB2 4 THR A 595 GLY A 598 -1 N THR A 595 O SER A 603 SHEET 1 AB3 5 SER A 553 LYS A 555 0 SHEET 2 AB3 5 SER A 633 THR A 638 1 O ARG A 636 N VAL A 554 SHEET 3 AB3 5 GLY A 616 MET A 623 -1 N LEU A 620 O SER A 633 SHEET 4 AB3 5 LYS A 570 ARG A 575 -1 N ILE A 574 O MET A 619 SHEET 5 AB3 5 ARG A 589 PRO A 591 -1 O ILE A 590 N LEU A 573 SSBOND 1 CYS A 18 CYS A 27 1555 1555 2.03 SSBOND 2 CYS A 515 CYS A 518 1555 1555 2.02 LINK O LYS A 29 CA CA A1002 1555 1555 2.26 LINK OD1 ASP A 32 CA CA A1002 1555 1555 2.54 LINK O ASN A 34 CA CA A1002 1555 1555 2.22 LINK O THR A 37 CA CA A1002 1555 1555 2.40 LINK OG1 THR A 37 CA CA A1002 1555 1555 2.47 LINK O ALA A 141 CA CA A1002 1555 1555 2.42 LINK OE2 GLU A 142 CA CA A1002 1555 1555 2.37 LINK OH TYR A 272 CU CU A1001 1555 1555 1.87 LINK NE2 HIS A 496 CU CU A1001 1555 1555 1.97 LINK NE2 HIS A 581 CU CU A1001 1555 1555 2.13 LINK CU CU A1001 O HOH A1169 1555 1555 2.46 CISPEP 1 PRO A 51 PRO A 52 0 4.29 CISPEP 2 GLY A 162 PRO A 163 0 0.65 CISPEP 3 GLY A 349 PRO A 350 0 5.67 SITE 1 AC1 7 PHE A 227 CYS A 228 TYR A 272 TYR A 495 SITE 2 AC1 7 HIS A 496 HIS A 581 HOH A1169 SITE 1 AC2 6 LYS A 29 ASP A 32 ASN A 34 THR A 37 SITE 2 AC2 6 ALA A 141 GLU A 142 SITE 1 AC3 5 GLU A 195 ALA A 323 CYS A 515 ASP A 517 SITE 2 AC3 5 HOH A1655 SITE 1 AC4 10 ARG A 371 ALA A 378 ALA A 381 THR A 398 SITE 2 AC4 10 PHE A 399 GLY A 400 ASN A 413 ALA A 414 SITE 3 AC4 10 HIS A 415 HOH A1328 SITE 1 AC5 8 VAL A 477 TYR A 484 GLN A 486 HOH A1102 SITE 2 AC5 8 HOH A1116 HOH A1148 HOH A1187 HOH A1356 CRYST1 97.282 89.120 86.162 90.00 117.82 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010279 0.000000 0.005424 0.00000 SCALE2 0.000000 0.011221 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013123 0.00000