HEADER IMMUNE SYSTEM 29-JUN-20 6XLZ TITLE STRUCTURE OF NHP D11A.F2 FAB IN COMPLEX WITH 16055 V2B PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN GP160; COMPND 3 CHAIN: P, A; COMPND 4 SYNONYM: ENV POLYPROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NHP_D11A.F2_FAB_HEAVY_CHAIN; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: NHP_D11A.F2_FAB_LIGHT_CHAIN; COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: ENV; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 9 ORGANISM_TAXID: 9544; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 MOL_ID: 3; SOURCE 13 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 14 ORGANISM_TAXID: 9544; SOURCE 15 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS FAB, HIV, V1V2, COMPLEX, ANTIBODY, SCAFFOLD, ANTIVIRAL PROTEIN-IMMUNE KEYWDS 2 SYSTEM COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.ALJEDANI,J.RODARTE,T.LIBAN,M.PANCERA REVDAT 3 18-OCT-23 6XLZ 1 REMARK REVDAT 2 19-JAN-22 6XLZ 1 JRNL REVDAT 1 07-JUL-21 6XLZ 0 JRNL AUTH S.S.ALJEDANI,T.J.LIBAN,K.TRAN,G.PHAD,S.SINGH,V.DUBROVSKAYA, JRNL AUTH 2 P.PUSHPARAJ,P.MARTINEZ-MURILLO,J.RODARTE,A.MILEANT, JRNL AUTH 3 V.MANGALA PRASAD,R.KINZELMAN,S.O'DELL,J.R.MASCOLA,K.K.LEE, JRNL AUTH 4 G.B.KARLSSON HEDESTAM,R.T.WYATT,M.PANCERA JRNL TITL STRUCTURALLY RELATED BUT GENETICALLY UNRELATED ANTIBODY JRNL TITL 2 LINEAGES CONVERGE ON AN IMMUNODOMINANT HIV-1 ENV JRNL TITL 3 NEUTRALIZING DETERMINANT FOLLOWING TRIMER IMMUNIZATION. JRNL REF PLOS PATHOG. V. 17 09543 2021 JRNL REFN ESSN 1553-7374 JRNL PMID 34559844 JRNL DOI 10.1371/JOURNAL.PPAT.1009543 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 94.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 21700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1092 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 94.2100 - 5.6000 1.00 2791 148 0.2338 0.2608 REMARK 3 2 5.6000 - 4.4500 1.00 2616 145 0.1751 0.2072 REMARK 3 3 4.4400 - 3.8800 1.00 2547 150 0.1883 0.2387 REMARK 3 4 3.8800 - 3.5300 1.00 2547 132 0.2246 0.2828 REMARK 3 5 3.5300 - 3.2800 1.00 2556 135 0.2126 0.2522 REMARK 3 6 3.2700 - 3.0800 0.99 2539 115 0.2486 0.2709 REMARK 3 7 3.0800 - 2.9300 1.00 2506 142 0.2617 0.3414 REMARK 3 8 2.9300 - 2.8000 0.99 2506 125 0.2680 0.2838 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.215 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.638 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3577 REMARK 3 ANGLE : 0.958 4888 REMARK 3 CHIRALITY : 0.052 564 REMARK 3 PLANARITY : 0.006 614 REMARK 3 DIHEDRAL : 17.440 1250 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XLZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1000249645. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21787 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 94.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 22.20 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 22.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4RFO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.0 AND 1.32 M K/NA REMARK 280 TARTRATE AT 8.5 MG/ML. CRYO PROTECTION: 15% 2R3R BUTANEDIOL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.96600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 113.93200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 85.44900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 142.41500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.48300 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.96600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 113.93200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 142.41500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 85.44900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 28.48300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: P, H, L, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG P 178 REMARK 465 ASN P 195 REMARK 465 CYS P 196 REMARK 465 SER H 134 REMARK 465 LYS H 135 REMARK 465 SER H 136 REMARK 465 THR H 137 REMARK 465 SER H 138 REMARK 465 GLY H 139 REMARK 465 SER H 221 REMARK 465 CYS H 222 REMARK 465 GLU L 216 REMARK 465 CYS L 217 REMARK 465 SER L 218 REMARK 465 ARG A 174 REMARK 465 LEU A 175 REMARK 465 ASP A 176 REMARK 465 ILE A 177 REMARK 465 VAL A 178 REMARK 465 PRO A 179 REMARK 465 LEU A 180 REMARK 465 GLU A 181 REMARK 465 GLU A 182 REMARK 465 GLU A 183 REMARK 465 ARG A 184 REMARK 465 LYS A 185 REMARK 465 GLY A 186 REMARK 465 ASN A 187 REMARK 465 SER A 188 REMARK 465 ASN A 195 REMARK 465 CYS A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU P 179 CG CD1 CD2 REMARK 470 THR H 199 OG1 CG2 REMARK 470 LYS H 207 CG CD CE NZ REMARK 470 GLU H 218 CG CD OE1 OE2 REMARK 470 LYS H 220 CG CD CE NZ REMARK 470 LYS L 162 CG CD CE NZ REMARK 470 ARG L 195 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP L 29 O HOH L 401 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD1 ILE P 181 CD1 ILE P 181 9554 1.64 REMARK 500 OG SER H 178 OD1 ASN L 134 12565 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL P 182 C PRO P 183 N 0.158 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN H 5 67.46 39.96 REMARK 500 TYR H 32 -155.65 61.69 REMARK 500 ASP H 150 71.08 59.92 REMARK 500 THR H 166 -36.81 -141.52 REMARK 500 ASP L 51 -46.36 73.88 REMARK 500 ASN L 52 19.93 -151.52 REMARK 500 SER L 90 -152.25 -146.04 REMARK 500 ASN L 176 19.79 59.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU3 H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU3 H 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU3 H 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU3 H 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU3 L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 L 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 L 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 L 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU3 L 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BU3 L 306 DBREF1 6XLZ P 178 196 UNP A0A0B5KUY7_9HIV1 DBREF2 6XLZ P A0A0B5KUY7 172 194 DBREF 6XLZ H 1 222 PDB 6XLZ 6XLZ 1 222 DBREF 6XLZ L 1 218 PDB 6XLZ 6XLZ 1 218 DBREF1 6XLZ A 174 196 UNP A0A0B5KUY7_9HIV1 DBREF2 6XLZ A A0A0B5KUY7 172 194 SEQRES 1 P 23 ARG LEU ASP ILE VAL PRO LEU GLU GLU GLU ARG LYS GLY SEQRES 2 P 23 ASN SER SER LYS TYR ARG LEU ILE ASN CYS SEQRES 1 H 222 GLN LEU GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 222 PRO SER GLU THR LEU SER LEU THR CYS THR VAL SER ASP SEQRES 3 H 222 GLY SER ILE ARG ASP TYR TRP TRP ASN TRP ILE ARG GLN SEQRES 4 H 222 PRO PRO GLY LYS GLY LEU GLU TRP ILE GLY ARG ILE ASP SEQRES 5 H 222 SER VAL VAL ASN THR TYR TYR ASN PRO SER LEU LYS SER SEQRES 6 H 222 ARG VAL THR LEU SER VAL ASP THR SER LYS ASN GLN VAL SEQRES 7 H 222 SER LEU ARG LEU SER SER VAL THR ALA ALA ASP THR ALA SEQRES 8 H 222 VAL TYR TYR CYS ALA ARG PRO TYR CYS PRO GLY SER ALA SEQRES 9 H 222 CYS TYR ASP SER TRP GLY GLN GLY VAL LEU VAL THR VAL SEQRES 10 H 222 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 11 H 222 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 12 H 222 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 13 H 222 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 14 H 222 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 15 H 222 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 16 H 222 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 17 H 222 SER ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER SEQRES 18 H 222 CYS SEQRES 1 L 217 GLU VAL VAL PHE THR GLN PRO HIS SER VAL SER GLY SER SEQRES 2 L 217 PRO GLY GLN THR VAL THR ILE SER CYS THR ARG SER SER SEQRES 3 L 217 GLY SER LEU ASP SER GLU TYR VAL GLN TRP TYR GLN GLN SEQRES 4 L 217 ARG PRO GLY ARG ALA PRO THR ILE VAL ILE TYR ARG ASP SEQRES 5 L 217 ASN GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 L 217 SER ILE ASP SER SER SER ASN SER ALA SER LEU ALA ILE SEQRES 7 L 217 SER GLY LEU LYS SER GLU ASP GLU ALA ASP TYR TYR CYS SEQRES 8 L 217 GLN SER ALA ASP ASP SER TYR ASN TRP VAL PHE GLY GLY SEQRES 9 L 217 GLY THR ARG LEU THR VAL LEU SER GLN PRO LYS ALA ALA SEQRES 10 L 217 PRO SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU SEQRES 11 L 217 GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP SEQRES 12 L 217 PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SEQRES 13 L 217 SER SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SEQRES 14 L 217 SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR SEQRES 15 L 217 LEU SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER SEQRES 16 L 217 TYR SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU SEQRES 17 L 217 LYS THR VAL ALA PRO THR GLU CYS SER SEQRES 1 A 23 ARG LEU ASP ILE VAL PRO LEU GLU GLU GLU ARG LYS GLY SEQRES 2 A 23 ASN SER SER LYS TYR ARG LEU ILE ASN CYS HET BU3 H 301 16 HET BU3 H 302 16 HET BU3 H 303 16 HET SO4 H 304 5 HET SO4 H 305 5 HET SO4 H 306 5 HET SO4 H 307 5 HET SO4 H 308 5 HET BU3 H 309 16 HET BU3 L 301 16 HET SO4 L 302 5 HET SO4 L 303 5 HET SO4 L 304 5 HET BU3 L 305 16 HET BU3 L 306 16 HETNAM BU3 (R,R)-2,3-BUTANEDIOL HETNAM SO4 SULFATE ION FORMUL 5 BU3 7(C4 H10 O2) FORMUL 8 SO4 8(O4 S 2-) FORMUL 20 HOH *96(H2 O) HELIX 1 AA1 LEU H 63 SER H 65 5 3 HELIX 2 AA2 THR H 83 THR H 87 5 5 HELIX 3 AA3 SER H 162 ALA H 164 5 3 HELIX 4 AA4 SER H 193 LEU H 195 5 3 HELIX 5 AA5 LYS H 207 ASN H 210 5 4 HELIX 6 AA6 SER L 27B GLU L 31 5 5 HELIX 7 AA7 LYS L 79 GLU L 83 5 5 HELIX 8 AA8 SER L 127 GLN L 132 1 6 HELIX 9 AA9 THR L 187 LYS L 192 1 6 SHEET 1 AA1 3 TYR P 191 ILE P 194 0 SHEET 2 AA1 3 ASP P 180 PRO P 183 -1 N VAL P 182 O ARG P 192 SHEET 3 AA1 3 ARG A 192 LEU A 193 1 O ARG A 192 N ILE P 181 SHEET 1 AA2 6 LEU H 11 VAL H 12 0 SHEET 2 AA2 6 VAL H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA2 6 ALA H 88 TYR H 96 -1 N TYR H 90 O VAL H 107 SHEET 4 AA2 6 TRP H 33 GLN H 39 -1 N ILE H 37 O TYR H 91 SHEET 5 AA2 6 GLU H 46 ASP H 52 -1 O ILE H 48 N TRP H 36 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O TYR H 58 N ARG H 50 SHEET 1 AA3 4 LEU H 11 VAL H 12 0 SHEET 2 AA3 4 VAL H 107 VAL H 111 1 O THR H 110 N VAL H 12 SHEET 3 AA3 4 ALA H 88 TYR H 96 -1 N TYR H 90 O VAL H 107 SHEET 4 AA3 4 TYR H 100C TRP H 103 -1 O TYR H 100C N TYR H 96 SHEET 1 AA4 3 LEU H 18 THR H 23 0 SHEET 2 AA4 3 GLN H 77 LEU H 82 -1 O LEU H 82 N LEU H 18 SHEET 3 AA4 3 VAL H 67 ASP H 72 -1 N SER H 70 O SER H 79 SHEET 1 AA5 4 SER H 126 LEU H 130 0 SHEET 2 AA5 4 THR H 141 TYR H 151 -1 O GLY H 145 N LEU H 130 SHEET 3 AA5 4 TYR H 182 PRO H 191 -1 O LEU H 184 N VAL H 148 SHEET 4 AA5 4 VAL H 169 THR H 171 -1 N HIS H 170 O VAL H 187 SHEET 1 AA6 4 SER H 126 LEU H 130 0 SHEET 2 AA6 4 THR H 141 TYR H 151 -1 O GLY H 145 N LEU H 130 SHEET 3 AA6 4 TYR H 182 PRO H 191 -1 O LEU H 184 N VAL H 148 SHEET 4 AA6 4 VAL H 175 LEU H 176 -1 N VAL H 175 O SER H 183 SHEET 1 AA7 3 THR H 157 TRP H 160 0 SHEET 2 AA7 3 ILE H 201 HIS H 206 -1 O ASN H 203 N SER H 159 SHEET 3 AA7 3 THR H 211 ARG H 216 -1 O VAL H 213 N VAL H 204 SHEET 1 AA8 4 PHE L 4 THR L 5 0 SHEET 2 AA8 4 VAL L 19 ARG L 25 -1 O THR L 24 N THR L 5 SHEET 3 AA8 4 SER L 70 ILE L 75 -1 O ILE L 75 N VAL L 19 SHEET 4 AA8 4 PHE L 62 ASP L 66A-1 N SER L 63 O ALA L 74 SHEET 1 AA9 5 SER L 9 GLY L 13 0 SHEET 2 AA9 5 THR L 102 VAL L 106 1 O THR L 105 N VAL L 11 SHEET 3 AA9 5 ALA L 84 ALA L 91 -1 N ALA L 84 O LEU L 104 SHEET 4 AA9 5 GLN L 34 GLN L 38 -1 N GLN L 34 O GLN L 89 SHEET 5 AA9 5 THR L 45 ILE L 48 -1 O THR L 45 N GLN L 37 SHEET 1 AB1 4 SER L 9 GLY L 13 0 SHEET 2 AB1 4 THR L 102 VAL L 106 1 O THR L 105 N VAL L 11 SHEET 3 AB1 4 ALA L 84 ALA L 91 -1 N ALA L 84 O LEU L 104 SHEET 4 AB1 4 TRP L 96 PHE L 98 -1 O VAL L 97 N SER L 90 SHEET 1 AB2 4 SER L 120 PHE L 124 0 SHEET 2 AB2 4 ALA L 136 PHE L 145 -1 O VAL L 139 N PHE L 124 SHEET 3 AB2 4 TYR L 178 LEU L 186 -1 O ALA L 180 N ILE L 142 SHEET 4 AB2 4 VAL L 165 THR L 167 -1 N GLU L 166 O TYR L 183 SHEET 1 AB3 4 SER L 120 PHE L 124 0 SHEET 2 AB3 4 ALA L 136 PHE L 145 -1 O VAL L 139 N PHE L 124 SHEET 3 AB3 4 TYR L 178 LEU L 186 -1 O ALA L 180 N ILE L 142 SHEET 4 AB3 4 SER L 171 LYS L 172 -1 N SER L 171 O ALA L 179 SHEET 1 AB4 3 THR L 151 ALA L 156 0 SHEET 2 AB4 3 TYR L 197 HIS L 203 -1 O GLN L 200 N ALA L 153 SHEET 3 AB4 3 SER L 206 VAL L 212 -1 O VAL L 208 N VAL L 201 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.04 SSBOND 2 CYS H 97 CYS H 100B 1555 1555 2.04 SSBOND 3 CYS H 146 CYS H 202 1555 1555 2.03 SSBOND 4 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 5 CYS L 140 CYS L 199 1555 1555 2.03 CISPEP 1 PHE H 152 PRO H 153 0 -7.26 CISPEP 2 GLU H 154 PRO H 155 0 -4.59 CISPEP 3 TYR L 146 PRO L 147 0 3.11 SITE 1 AC1 2 GLY H 10 LEU H 11 SITE 1 AC2 2 GLU H 16 ARG H 81 SITE 1 AC3 6 GLU H 46 TRP H 47 ASN H 60 TRP L 96 SITE 2 AC3 6 VAL L 97 PHE L 98 SITE 1 AC4 4 GLY H 42 LYS H 43 GLY H 44 TYR L 87 SITE 1 AC5 4 GLN H 3 LEU H 4 GLN H 5 GLU H 6 SITE 1 AC6 6 GLN H 177 SER H 178 HOH H 403 GLY L 164 SITE 2 AC6 6 GLU L 166 GLU L 189 SITE 1 AC7 3 PRO H 41 LEU H 176 TYR H 182 SITE 1 AC8 3 CYS H 100B HOH H 404 HOH H 407 SITE 1 AC9 4 GLN H 39 GLY H 42 GLN L 38 GLY L 41 SITE 1 AD1 4 TYR H 91 GLN H 105 GLY H 106 GLY L 41 SITE 1 AD2 4 SER H 179 HOH H 405 LYS L 135 HOH L 408 SITE 1 AD3 3 VAL H 169 GLN L 173 SER L 174 SITE 1 AD4 4 GLN L 37 ARG L 39 PRO L 59 PHE L 62 SITE 1 AD5 4 ASN H 76 PRO L 7 HIS L 8 SER L 9 SITE 1 AD6 1 ASN L 175 CRYST1 130.393 130.393 170.898 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007669 0.004428 0.000000 0.00000 SCALE2 0.000000 0.008856 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005851 0.00000