HEADER BIOSYNTHETIC PROTEIN 06-JUL-20 6XO2 TITLE STRUCTURAL CHARACTERIZATION OF BETA CYANOALANINE SYNTHASE FROM TITLE 2 TETRANYCHUS URTICAE (TWO-SPOTTED SPIDER MITE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-CYANOALANINE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TETRANYCHUS URTICAE; SOURCE 3 ORGANISM_COMMON: TWO-SPOTTED SPIDER MITE; SOURCE 4 ORGANISM_TAXID: 32264; SOURCE 5 GENE: 107363798; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG35 KEYWDS BETA CYANOALANINE SYNTHASE, PLP. TWO-SPOTTED SPIDER MITE, KEYWDS 2 BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.DANESHIAN,C.SCHLACHTER,W.DERMAUW,N.WYBOUW,T.VAN LEEUWEN,M.CHRUSZCZ REVDAT 3 18-OCT-23 6XO2 1 REMARK REVDAT 2 09-FEB-22 6XO2 1 JRNL REVDAT 1 19-MAY-21 6XO2 0 JRNL AUTH L.DANESHIAN,I.RENGGLI,R.HANAWAY,L.R.OFFERMANN, JRNL AUTH 2 C.R.SCHLACHTER,R.HERNANDEZ ARRIAZA,S.HENRY,R.PRAKASH, JRNL AUTH 3 N.WYBOUW,W.DERMAUW,L.S.SHIMIZU,T.VAN LEEUWEN,T.M.MAKRIS, JRNL AUTH 4 V.GRBIC,M.GRBIC,M.CHRUSZCZ JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF JRNL TITL 2 BETA-CYANOALANINE SYNTHASE FROM TETRANYCHUS URTICAE. JRNL REF INSECT BIOCHEM.MOL.BIOL. V. 142 03722 2022 JRNL REFN ISSN 0965-1748 JRNL PMID 35063675 JRNL DOI 10.1016/J.IBMB.2022.103722 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 38452 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1918 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2793 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2183 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.33000 REMARK 3 B22 (A**2) : 0.33000 REMARK 3 B33 (A**2) : -0.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.080 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.522 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2256 ; 0.015 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2102 ; 0.036 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3058 ; 1.931 ; 1.645 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4893 ; 2.460 ; 1.575 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 295 ; 6.046 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;33.466 ;23.646 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 376 ;13.548 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;19.862 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 306 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2534 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 427 ; 0.023 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 151 REMARK 3 ORIGIN FOR THE GROUP (A): 26.9097 19.5155 32.3287 REMARK 3 T TENSOR REMARK 3 T11: 0.0100 T22: 0.0503 REMARK 3 T33: 0.0097 T12: -0.0105 REMARK 3 T13: 0.0002 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 0.3715 L22: 0.7308 REMARK 3 L33: 0.4865 L12: 0.3017 REMARK 3 L13: 0.0775 L23: -0.0427 REMARK 3 S TENSOR REMARK 3 S11: -0.0022 S12: 0.0823 S13: -0.0587 REMARK 3 S21: 0.0102 S22: 0.0180 S23: -0.0584 REMARK 3 S31: 0.0409 S32: -0.0814 S33: -0.0158 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 152 A 222 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2280 26.9529 19.1262 REMARK 3 T TENSOR REMARK 3 T11: 0.0221 T22: 0.1203 REMARK 3 T33: 0.0183 T12: -0.0044 REMARK 3 T13: -0.0081 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.1602 L22: 1.2168 REMARK 3 L33: 0.8830 L12: 0.1360 REMARK 3 L13: -0.0896 L23: -0.4432 REMARK 3 S TENSOR REMARK 3 S11: -0.0336 S12: 0.0955 S13: -0.0074 REMARK 3 S21: -0.0756 S22: 0.0827 S23: 0.0709 REMARK 3 S31: 0.0190 S32: -0.1894 S33: -0.0492 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 256 A 319 REMARK 3 ORIGIN FOR THE GROUP (A): 37.4367 31.9576 17.4182 REMARK 3 T TENSOR REMARK 3 T11: 0.0303 T22: 0.0740 REMARK 3 T33: 0.0086 T12: 0.0004 REMARK 3 T13: 0.0129 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 1.0679 L22: 0.9699 REMARK 3 L33: 1.6720 L12: 0.2130 REMARK 3 L13: 0.1463 L23: 0.0599 REMARK 3 S TENSOR REMARK 3 S11: -0.0153 S12: 0.1913 S13: -0.0367 REMARK 3 S21: -0.1083 S22: 0.0460 S23: -0.0821 REMARK 3 S31: -0.0088 S32: 0.0914 S33: -0.0307 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6XO2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1000250363. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40447 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : 0.07900 REMARK 200 FOR THE DATA SET : 41.0500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.68100 REMARK 200 R SYM FOR SHELL (I) : 0.68100 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6PMU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM CHLORIDE, 12% PEG 3350, REMARK 280 PH 7.0., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.75150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.18800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.18800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.87575 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.18800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.18800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 107.62725 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.18800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.18800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.87575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.18800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.18800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 107.62725 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 71.75150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 64.37600 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 64.37600 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 71.75150 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 804 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 959 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1072 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 223 REMARK 465 GLN A 224 REMARK 465 ILE A 231 REMARK 465 THR A 232 REMARK 465 LYS A 233 REMARK 465 PRO A 234 REMARK 465 LEU A 235 REMARK 465 HIS A 236 REMARK 465 LEU A 237 REMARK 465 LEU A 238 REMARK 465 GLN A 239 REMARK 465 GLY A 240 REMARK 465 SER A 241 REMARK 465 GLY A 242 REMARK 465 TYR A 243 REMARK 465 GLY A 244 REMARK 465 CYS A 245 REMARK 465 VAL A 246 REMARK 465 PRO A 247 REMARK 465 THR A 248 REMARK 465 LEU A 249 REMARK 465 PHE A 250 REMARK 465 ASP A 251 REMARK 465 LYS A 252 REMARK 465 LYS A 253 REMARK 465 VAL A 254 REMARK 465 TYR A 255 REMARK 465 GLU A 320 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 3 CG CD OE1 OE2 REMARK 470 GLU A 151 CG CD OE1 OE2 REMARK 470 ASN A 256 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 8 NE - CZ - NH1 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG A 8 NE - CZ - NH2 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 110 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 49 30.31 72.71 REMARK 500 THR A 173 -69.21 -126.73 REMARK 500 ILE A 226 -63.72 -93.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1089 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A1090 DISTANCE = 7.95 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLP A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 702 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6PMU RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN A DIFFERENT CRYSTAL FORM DBREF 6XO2 A 1 320 UNP T1KF23 T1KF23_TETUR 1 320 SEQADV 6XO2 GLN A -1 UNP T1KF23 EXPRESSION TAG SEQADV 6XO2 SER A 0 UNP T1KF23 EXPRESSION TAG SEQRES 1 A 322 GLN SER MET THR GLU SER THR VAL ASP ARG ILE ASN GLY SEQRES 2 A 322 ILE THR PRO SER ALA LEU ASP LEU ILE GLY ASN THR PRO SEQRES 3 A 322 LEU ILE ALA LEU ASP ARG LEU TRP PRO GLY PRO GLY ARG SEQRES 4 A 322 LEU LEU ALA LYS CYS GLU PHE LEU ASN PRO THR ALA SER SEQRES 5 A 322 LEU LYS ASP ARG SER SER TYR TYR MET ILE ALA LYS ALA SEQRES 6 A 322 LYS GLU SER GLY GLN LEU LYS ASP GLY GLU SER VAL ILE SEQRES 7 A 322 GLU VAL THR SER GLY ASN GLN GLY GLY GLY ILE ALA CYS SEQRES 8 A 322 VAL THR ALA VAL MET GLY HIS PRO PHE THR VAL THR MET SEQRES 9 A 322 SER LYS GLY ASN SER PRO GLN ARG ALA ILE MET MET ASN SEQRES 10 A 322 ALA LEU GLY ALA ASN VAL ILE LEU VAL ASP GLN VAL THR SEQRES 11 A 322 GLY LYS PRO GLY ASN VAL THR ALA ASP ASP VAL ALA ALA SEQRES 12 A 322 ALA GLU GLU THR ALA MET LYS ILE ARG GLU GLU THR ASN SEQRES 13 A 322 ALA TYR TYR VAL ASP GLN PHE ASN ASN PRO THR ASN CYS SEQRES 14 A 322 LEU ALA HIS TYR GLU THR THR GLY PRO GLU ILE TRP ARG SEQRES 15 A 322 GLN THR ASN GLY ARG ILE ASP ALA PHE LEU VAL GLY CYS SEQRES 16 A 322 GLY THR GLY GLY CYS PHE VAL GLY THR SER LYS PHE LEU SEQRES 17 A 322 LYS GLU LYS ASN PRO ASN VAL ARG CYS PHE VAL VAL GLU SEQRES 18 A 322 PRO GLU GLY CYS GLN PRO ILE ALA GLY CYS THR ILE THR SEQRES 19 A 322 LYS PRO LEU HIS LEU LEU GLN GLY SER GLY TYR GLY CYS SEQRES 20 A 322 VAL PRO THR LEU PHE ASP LYS LYS VAL TYR ASN ASP SER SEQRES 21 A 322 ILE SER VAL SER ASP GLU GLU ALA ILE GLU TYR ARG LYS SEQRES 22 A 322 LEU LEU GLY GLN LYS GLU GLY LEU PHE CYS GLY PHE THR SEQRES 23 A 322 THR GLY GLY ASN ILE ALA ALA ALA ILE LYS LEU LEU LYS SEQRES 24 A 322 SER GLY GLN LEU PRO LYS ASP ALA TRP VAL VAL THR ILE SEQRES 25 A 322 LEU CYS ASP SER GLY LEU LYS TYR PRO GLU HET PLP A 701 15 HET ACT A 702 4 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM ACT ACETATE ION HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 2 PLP C8 H10 N O6 P FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 HOH *290(H2 O) HELIX 1 AA1 SER A 15 ILE A 20 5 6 HELIX 2 AA2 PHE A 44 ASN A 46 5 3 HELIX 3 AA3 LEU A 51 SER A 66 1 16 HELIX 4 AA4 GLY A 81 GLY A 95 1 15 HELIX 5 AA5 SER A 107 ARG A 110 5 4 HELIX 6 AA6 ALA A 111 LEU A 117 1 7 HELIX 7 AA7 THR A 135 ASN A 154 1 20 HELIX 8 AA8 PRO A 164 THR A 173 1 10 HELIX 9 AA9 THR A 173 THR A 182 1 10 HELIX 10 AB1 GLY A 196 ASN A 210 1 15 HELIX 11 AB2 SER A 262 GLY A 278 1 17 HELIX 12 AB3 GLY A 282 GLY A 299 1 18 HELIX 13 AB4 SER A 314 TYR A 318 5 5 SHEET 1 AA1 6 LEU A 25 ALA A 27 0 SHEET 2 AA1 6 ARG A 37 CYS A 42 -1 O ALA A 40 N ILE A 26 SHEET 3 AA1 6 TRP A 306 LEU A 311 1 O LEU A 311 N LYS A 41 SHEET 4 AA1 6 ALA A 188 GLY A 192 1 N ALA A 188 O VAL A 308 SHEET 5 AA1 6 ARG A 214 PRO A 220 1 O PHE A 216 N PHE A 189 SHEET 6 AA1 6 SER A 258 VAL A 261 1 O ILE A 259 N GLU A 219 SHEET 1 AA2 4 ASN A 120 VAL A 124 0 SHEET 2 AA2 4 PHE A 98 SER A 103 1 N VAL A 100 O ILE A 122 SHEET 3 AA2 4 VAL A 75 VAL A 78 1 N VAL A 75 O THR A 99 SHEET 4 AA2 4 TYR A 156 TYR A 157 1 O TYR A 156 N ILE A 76 LINK NZ LYS A 52 C4A PLP A 701 1555 1555 1.28 CISPEP 1 GLY A 34 PRO A 35 0 -2.38 SITE 1 AC1 17 LYS A 52 ASN A 82 CYS A 193 GLY A 194 SITE 2 AC1 17 THR A 195 GLY A 196 GLY A 197 CYS A 198 SITE 3 AC1 17 ILE A 226 THR A 284 CYS A 312 ASP A 313 SITE 4 AC1 17 TYR A 318 HOH A 843 HOH A 872 HOH A 946 SITE 5 AC1 17 HOH A 954 SITE 1 AC2 7 VAL A 78 SER A 80 MET A 102 SER A 103 SITE 2 AC2 7 ASN A 106 HOH A 811 HOH A 884 CRYST1 64.376 64.376 143.503 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015534 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015534 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006968 0.00000