HEADER LIPID BINDING PROTEIN 07-JUL-20 6XOK TITLE X-RAY STRUCTURE OF THE RHOMBOHEDRAL FORM OF THE LIPASE FROM TITLE 2 THERMOMYCES LANUGINOSA AT 1.3 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRIACYLGLYCEROL LIPASE; COMPND 5 EC: 3.1.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOMYCES LANUGINOSUS; SOURCE 3 ORGANISM_TAXID: 5541; SOURCE 4 GENE: LIP; SOURCE 5 EXPRESSION_SYSTEM: ASPERGILLUS FLAVUS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 5059 KEYWDS DIACYLGLYCERIDE, INTERFACIAL ACTIVATION, OLIGOMER, SUBSTRATE COMPLEX, KEYWDS 2 LIPID BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.MCPHERSON REVDAT 2 18-OCT-23 6XOK 1 REMARK REVDAT 1 14-OCT-20 6XOK 0 JRNL AUTH A.MCPHERSON,S.B.LARSON,A.KALASKY JRNL TITL THE CRYSTAL STRUCTURES OF THERMOMYCES (HUMICOLA) LANUGINOSA JRNL TITL 2 LIPASE IN COMPLEX WITH ENZYMATIC REACTANTS JRNL REF CURRENT ENZYME INHIBITION V. 16 2020 JRNL DOI 10.2174/1573408016999200511090910 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.9 REMARK 3 NUMBER OF REFLECTIONS : 58353 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.106 REMARK 3 R VALUE (WORKING SET) : 0.104 REMARK 3 FREE R VALUE : 0.134 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 2865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 80.5200 - 3.5400 1.00 3335 195 0.1417 0.1556 REMARK 3 2 3.5400 - 2.8100 1.00 3222 178 0.1136 0.1417 REMARK 3 3 2.8100 - 2.4600 1.00 3201 154 0.1127 0.1285 REMARK 3 4 2.4600 - 2.2300 1.00 3196 154 0.0948 0.1174 REMARK 3 5 2.2300 - 2.0700 1.00 3131 192 0.0878 0.1295 REMARK 3 6 2.0700 - 1.9500 1.00 3176 148 0.0874 0.1148 REMARK 3 7 1.9500 - 1.8500 1.00 3178 150 0.0881 0.1291 REMARK 3 8 1.8500 - 1.7700 1.00 3119 176 0.0863 0.1299 REMARK 3 9 1.7700 - 1.7000 1.00 3142 157 0.0885 0.1182 REMARK 3 10 1.7000 - 1.6400 1.00 3181 139 0.0811 0.1297 REMARK 3 11 1.6400 - 1.5900 1.00 3095 165 0.0799 0.1212 REMARK 3 12 1.5900 - 1.5500 1.00 3189 132 0.0756 0.1140 REMARK 3 13 1.5500 - 1.5100 0.99 3079 143 0.0761 0.1252 REMARK 3 14 1.5100 - 1.4700 0.96 3015 159 0.0715 0.1158 REMARK 3 15 1.4700 - 1.4400 0.92 2831 193 0.0756 0.1193 REMARK 3 16 1.4400 - 1.4100 0.86 2686 130 0.0800 0.1371 REMARK 3 17 1.4100 - 1.3800 0.74 2327 103 0.0867 0.1534 REMARK 3 18 1.3800 - 1.3500 0.57 1748 115 0.1006 0.1410 REMARK 3 19 1.3500 - 1.3300 0.38 1178 68 0.1169 0.1646 REMARK 3 20 1.3300 - 1.3000 0.14 459 14 0.1575 0.1926 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.079 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.345 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2340 REMARK 3 ANGLE : 1.244 3189 REMARK 3 CHIRALITY : 0.099 342 REMARK 3 PLANARITY : 0.007 410 REMARK 3 DIHEDRAL : 20.100 882 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE WAS THOROUGHLY REFINED USING REMARK 3 REFMAC5 FROM CCP4 BUT THEN REFINED FURTHER USING REFINE FROM REMARK 3 PHENIX. SOME IMPROVEMENTS, SUCH AS ADDITION OF AA 241-244 AT THE REMARK 3 CLEAVAGE SITE WERE MADE IN REFINE. THE RESTRAINTS FOR THE REMARK 3 DIGLYCERIDE SUBSTRATE WERE MADE IN THE GRADE SERVER. WATERS WERE REMARK 3 ADDED BY HAND. REMARK 4 REMARK 4 6XOK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1000250512. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 6.0 - 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X CDTE 1M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58358 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 80.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.0 REMARK 200 DATA REDUNDANCY : 31.00 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : 0.04900 REMARK 200 FOR THE DATA SET : 42.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 14.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : 0.36000 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4EA6 REMARK 200 REMARK 200 REMARK: THIN NEEDLES OF INDETERMINATE CROSS SECTION REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN BY VAPOR DIFFUSION REMARK 280 AT ROOM TEMPERATURE IN 24 WELL CRYSCHEM SITTING DROP PLATES REMARK 280 (HAMPTON RESEARCH, ALISO VIEJO, CA) WITH 600 MICROLETERS REMARK 280 RESERVOIRS OF 25% PEG 3350 IN 0.10 M MES BUFFER AT PH 6.5. THE REMARK 280 PROTEIN DROPLETS WERE OF 8UL VOLUME AND CONSISTED OF EQUAL PARTS REMARK 280 OF A 20 TO 30 MG/ML PROTEIN STOCK SOLUTION AND THE RESERVOIR REMARK 280 SOLUTION. CRYSTALS USUALLY APPEARED AND GREW TO FULL SIZE WITHIN REMARK 280 ONE TO TWO WEEKS. RHOMBOHEDRAL CRYSTALS WERE THIN NEEDLES OF REMARK 280 INDETERMINATE CROSS-SECTION, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 38.18650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 22.04699 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 80.51700 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 38.18650 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 22.04699 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 80.51700 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 38.18650 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 22.04699 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 80.51700 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 38.18650 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 22.04699 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 80.51700 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 38.18650 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 22.04699 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 80.51700 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 38.18650 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 22.04699 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 80.51700 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 44.09397 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 161.03400 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 44.09397 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 161.03400 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 44.09397 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 161.03400 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 44.09397 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 161.03400 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 44.09397 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 161.03400 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 44.09397 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 161.03400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -214.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 P PO4 A 307 LIES ON A SPECIAL POSITION. REMARK 375 O3 PO4 A 307 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 686 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 801 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 816 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 819 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 ARG A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 LEU A -17 REMARK 465 VAL A -16 REMARK 465 LEU A -15 REMARK 465 PHE A -14 REMARK 465 PHE A -13 REMARK 465 VAL A -12 REMARK 465 SER A -11 REMARK 465 ALA A -10 REMARK 465 TRP A -9 REMARK 465 THR A -8 REMARK 465 ALA A -7 REMARK 465 LEU A -6 REMARK 465 ALA A -5 REMARK 465 SER A -4 REMARK 465 PRO A -3 REMARK 465 ILE A -2 REMARK 465 ARG A -1 REMARK 465 ARG A 0 REMARK 465 GLY A 245 REMARK 465 GLY A 246 REMARK 465 ASN A 247 REMARK 465 ASN A 248 REMARK 465 GLN A 249 REMARK 465 PRO A 250 REMARK 465 ASN A 251 REMARK 465 ILE A 252 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 THR A 244 CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 146 O HOH A 402 1.26 REMARK 500 HG SER A 83 O HOH A 402 1.49 REMARK 500 HE ARG A 179 OE2 GLU A 183 1.59 REMARK 500 OD1 ASP A 102 O HOH A 401 1.86 REMARK 500 O HOH A 739 O HOH A 765 1.97 REMARK 500 OG SER A 146 O HOH A 402 2.05 REMARK 500 O HOH A 413 O HOH A 612 2.12 REMARK 500 O HOH A 470 O HOH A 733 2.12 REMARK 500 OD1 ASN A 233 O HOH A 403 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ILE A 241 O HOH A 698 5555 1.85 REMARK 500 O HOH A 475 O HOH A 613 5555 1.91 REMARK 500 O HOH A 462 O HOH A 462 5555 2.09 REMARK 500 O HOH A 761 O HOH A 818 3555 2.13 REMARK 500 O HOH A 767 O HOH A 817 3555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 241 N - CA - C ANGL. DEV. = 19.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 36 -154.59 -121.89 REMARK 500 CYS A 41 54.86 -149.87 REMARK 500 ARG A 84 -48.50 -136.65 REMARK 500 SER A 146 -130.08 61.43 REMARK 500 SER A 146 -128.74 59.26 REMARK 500 LEU A 227 -0.46 72.90 REMARK 500 ILE A 241 22.43 30.52 REMARK 500 ASP A 242 -65.79 -154.13 REMARK 500 PHE A 262 -41.25 74.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 243 THR A 244 -123.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 808 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A 809 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 810 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 811 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A 812 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A 813 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A 814 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A 815 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A 816 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A 817 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH A 818 DISTANCE = 6.99 ANGSTROMS REMARK 525 HOH A 819 DISTANCE = 7.19 ANGSTROMS REMARK 525 HOH A 820 DISTANCE = 7.25 ANGSTROMS REMARK 525 HOH A 821 DISTANCE = 7.78 ANGSTROMS REMARK 525 HOH A 822 DISTANCE = 7.79 ANGSTROMS REMARK 525 HOH A 823 DISTANCE = 7.88 ANGSTROMS REMARK 525 HOH A 824 DISTANCE = 8.89 ANGSTROMS REMARK 525 HOH A 825 DISTANCE = 9.23 ANGSTROMS REMARK 525 HOH A 826 DISTANCE = 12.20 ANGSTROMS REMARK 525 HOH A 827 DISTANCE = 15.02 ANGSTROMS REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH A 455 DBREF 6XOK A -21 269 UNP O59952 LIP_THELA 1 291 SEQADV 6XOK LEU A 86 UNP O59952 ILE 108 CONFLICT SEQRES 1 A 291 MET ARG SER SER LEU VAL LEU PHE PHE VAL SER ALA TRP SEQRES 2 A 291 THR ALA LEU ALA SER PRO ILE ARG ARG GLU VAL SER GLN SEQRES 3 A 291 ASP LEU PHE ASN GLN PHE ASN LEU PHE ALA GLN TYR SER SEQRES 4 A 291 ALA ALA ALA TYR CYS GLY LYS ASN ASN ASP ALA PRO ALA SEQRES 5 A 291 GLY THR ASN ILE THR CYS THR GLY ASN ALA CYS PRO GLU SEQRES 6 A 291 VAL GLU LYS ALA ASP ALA THR PHE LEU TYR SER PHE GLU SEQRES 7 A 291 ASP SER GLY VAL GLY ASP VAL THR GLY PHE LEU ALA LEU SEQRES 8 A 291 ASP ASN THR ASN LYS LEU ILE VAL LEU SER PHE ARG GLY SEQRES 9 A 291 SER ARG SER LEU GLU ASN TRP ILE GLY ASN LEU ASN PHE SEQRES 10 A 291 ASP LEU LYS GLU ILE ASN ASP ILE CYS SER GLY CYS ARG SEQRES 11 A 291 GLY HIS ASP GLY PHE THR SER SER TRP ARG SER VAL ALA SEQRES 12 A 291 ASP THR LEU ARG GLN LYS VAL GLU ASP ALA VAL ARG GLU SEQRES 13 A 291 HIS PRO ASP TYR ARG VAL VAL PHE THR GLY HIS SER LEU SEQRES 14 A 291 GLY GLY ALA LEU ALA THR VAL ALA GLY ALA ASP LEU ARG SEQRES 15 A 291 GLY ASN GLY TYR ASP ILE ASP VAL PHE SER TYR GLY ALA SEQRES 16 A 291 PRO ARG VAL GLY ASN ARG ALA PHE ALA GLU PHE LEU THR SEQRES 17 A 291 VAL GLN THR GLY GLY THR LEU TYR ARG ILE THR HIS THR SEQRES 18 A 291 ASN ASP ILE VAL PRO ARG LEU PRO PRO ARG GLU PHE GLY SEQRES 19 A 291 TYR SER HIS SER SER PRO GLU TYR TRP ILE LYS SER GLY SEQRES 20 A 291 THR LEU VAL PRO VAL THR ARG ASN ASP ILE VAL LYS ILE SEQRES 21 A 291 GLU GLY ILE ASP ALA THR GLY GLY ASN ASN GLN PRO ASN SEQRES 22 A 291 ILE PRO ASP ILE PRO ALA HIS LEU TRP TYR PHE GLY LEU SEQRES 23 A 291 ILE GLY THR CYS LEU HET NAG A 301 27 HET PG4 A 302 61 HET PO4 A 303 5 HET PO4 A 304 5 HET PO4 A 305 5 HET PO4 A 306 5 HET PO4 A 307 5 HET PO4 A 308 5 HET LTV A 309 51 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PO4 PHOSPHATE ION HETNAM LTV 2-HYDROXY-3-(OCTADECANOYLOXY)PROPYL PENTACOSANOATE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG C8 H15 N O6 FORMUL 3 PG4 C8 H18 O5 FORMUL 4 PO4 6(O4 P 3-) FORMUL 10 LTV C46 H90 O5 FORMUL 11 HOH *427(H2 O) HELIX 1 AA1 SER A 3 ALA A 20 1 18 HELIX 2 AA2 TYR A 21 ASN A 26 5 6 HELIX 3 AA3 CYS A 41 ALA A 47 1 7 HELIX 4 AA4 SER A 85 LEU A 93 1 9 HELIX 5 AA5 ASP A 111 HIS A 135 1 25 HELIX 6 AA6 SER A 146 ARG A 160 1 15 HELIX 7 AA7 ASN A 178 GLN A 188 1 11 HELIX 8 AA8 ILE A 202 LEU A 206 5 5 HELIX 9 AA9 PRO A 208 GLY A 212 5 5 HELIX 10 AB1 THR A 231 ASN A 233 5 3 HELIX 11 AB2 ASP A 254 TRP A 260 1 7 SHEET 1 AA1 8 ALA A 49 SER A 58 0 SHEET 2 AA1 8 VAL A 63 ASP A 70 -1 O LEU A 67 N TYR A 53 SHEET 3 AA1 8 LEU A 75 PHE A 80 -1 O VAL A 77 N ALA A 68 SHEET 4 AA1 8 ARG A 139 HIS A 145 1 O VAL A 141 N ILE A 76 SHEET 5 AA1 8 ILE A 166 TYR A 171 1 O ASP A 167 N PHE A 142 SHEET 6 AA1 8 LEU A 193 HIS A 198 1 O TYR A 194 N VAL A 168 SHEET 7 AA1 8 GLU A 219 ILE A 222 1 O ILE A 222 N THR A 197 SHEET 8 AA1 8 ILE A 235 ILE A 238 -1 O ILE A 238 N GLU A 219 SHEET 1 AA2 2 LEU A 97 GLU A 99 0 SHEET 2 AA2 2 ARG A 108 HIS A 110 -1 O GLY A 109 N LYS A 98 SSBOND 1 CYS A 22 CYS A 268 1555 1555 2.09 SSBOND 2 CYS A 36 CYS A 41 1555 1555 2.04 SSBOND 3 CYS A 104 CYS A 107 1555 1555 2.05 LINK ND2 ASN A 33 C1 NAG A 301 1555 1555 1.42 CISPEP 1 LEU A 206 PRO A 207 0 -15.57 CISPEP 2 SER A 217 PRO A 218 0 -2.61 CRYST1 76.373 76.373 241.551 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013094 0.007560 0.000000 0.00000 SCALE2 0.000000 0.015119 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004140 0.00000