HEADER RNA BINDING PROTEIN 07-JUL-20 6XOR TITLE STRUCTURE OF THE SELF-ASSOCIATION DOMAIN OF SWALLOW COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN SWALLOW; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: SWA, CG3429; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: CHAMPION PET SUMO KEYWDS COILED COIL, SELF-ASSOCIATION DOMAIN, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.M.LOENING,E.BARBAR REVDAT 4 15-MAY-24 6XOR 1 REMARK REVDAT 3 14-JUN-23 6XOR 1 REMARK REVDAT 2 28-APR-21 6XOR 1 JRNL REVDAT 1 24-MAR-21 6XOR 0 JRNL AUTH N.M.LOENING,E.BARBAR JRNL TITL STRUCTURAL CHARACTERIZATION OF THE SELF-ASSOCIATION DOMAIN JRNL TITL 2 OF SWALLOW. JRNL REF PROTEIN SCI. V. 30 1056 2021 JRNL REFN ESSN 1469-896X JRNL PMID 33641207 JRNL DOI 10.1002/PRO.4055 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.21 REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XOR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1000250501. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 5.6 REMARK 210 IONIC STRENGTH : 30 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-99% 13C; U-99% 15N] REMARK 210 RESIDUES 205-275 OF SWALLOW, 10 REMARK 210 MM SODIUM CHLORIDE, 20 MM MES, 1 REMARK 210 MM SODIUM AZIDE, 0.2 MM DSS, 95% REMARK 210 H2O/5% D2O; 0.4 MM [U-99% 13C; U- REMARK 210 99% 15N] RESIDUES 205-275 OF REMARK 210 SWALLOW, 10 MM SODIUM CHLORIDE, REMARK 210 20 MM MES, 1 MM SODIUM AZIDE, REMARK 210 0.2 MM DSS, 0.4 MM UNLABELED REMARK 210 RESIDUES 205-275 OF SWALLOW, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-13C HSQC; 2D 1H-15N HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D 1H-13C NOESY AROMATIC; 3D REMARK 210 HNCACB; 3D HN(COCA)CB; 3D HN(CA) REMARK 210 CO; 3D HNCO; 3D C(CO)NH; 3D REMARK 210 H(CCO)NH; 3D HBHA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 950 MHZ; 600 MHZ; 900 MHZ; 700 REMARK 210 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III; AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 2.3.2, CCPNMR ANALYSIS 2.5 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 246 HZ1 LYS B 250 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 3 GLN A 272 -42.21 -133.91 REMARK 500 3 GLN B 272 -41.38 -134.10 REMARK 500 4 GLN A 272 -51.41 -153.60 REMARK 500 4 GLN B 272 -51.12 -153.90 REMARK 500 5 GLN A 272 73.64 -159.00 REMARK 500 5 GLN B 272 73.96 -159.05 REMARK 500 8 GLN A 272 81.99 -155.34 REMARK 500 8 GLN B 272 82.18 -155.14 REMARK 500 9 GLN A 272 29.61 -153.92 REMARK 500 9 GLN B 272 29.93 -154.63 REMARK 500 10 ASP A 274 44.53 -85.66 REMARK 500 10 ASP B 274 44.34 -85.26 REMARK 500 11 GLN A 272 33.05 -142.62 REMARK 500 11 GLN A 273 117.69 -170.81 REMARK 500 11 GLN B 272 33.11 -142.90 REMARK 500 11 GLN B 273 117.62 -170.85 REMARK 500 13 PHE A 206 55.43 -90.72 REMARK 500 13 ASP A 274 37.45 -99.93 REMARK 500 13 PHE B 206 55.52 -90.30 REMARK 500 13 ASP B 274 37.50 -99.36 REMARK 500 16 GLN A 273 -50.82 -125.77 REMARK 500 16 GLN B 273 -50.67 -126.24 REMARK 500 18 PHE A 206 57.16 -91.24 REMARK 500 18 PHE B 206 57.43 -91.61 REMARK 500 19 GLN A 273 -40.01 -132.48 REMARK 500 19 GLN B 273 -40.25 -132.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3E2B RELATED DB: PDB REMARK 900 3E2B CONTAINS A REGION OF SWALLOW CLOSE TO THE SELF-ASSOCIATION REMARK 900 DOMAIN COMPLEXED WITH LC8 REMARK 900 RELATED ID: 30768 RELATED DB: BMRB REMARK 900 STRUCTURE OF THE SELF-ASSOCIATION DOMAIN OF SWALLOW DBREF 6XOR A 205 275 UNP P40688 SWA_DROME 205 275 DBREF 6XOR B 205 275 UNP P40688 SWA_DROME 205 275 SEQADV 6XOR GLU A 224 UNP P40688 ARG 224 ENGINEERED MUTATION SEQADV 6XOR ILE A 244 UNP P40688 LYS 244 ENGINEERED MUTATION SEQADV 6XOR ASP A 253 UNP P40688 CYS 253 ENGINEERED MUTATION SEQADV 6XOR ALA A 265 UNP P40688 CYS 265 ENGINEERED MUTATION SEQADV 6XOR GLU B 224 UNP P40688 ARG 224 ENGINEERED MUTATION SEQADV 6XOR ILE B 244 UNP P40688 LYS 244 ENGINEERED MUTATION SEQADV 6XOR ASP B 253 UNP P40688 CYS 253 ENGINEERED MUTATION SEQADV 6XOR ALA B 265 UNP P40688 CYS 265 ENGINEERED MUTATION SEQRES 1 A 71 SER PHE ASP ARG LEU LEU ALA GLU ASN GLU SER LEU GLN SEQRES 2 A 71 GLN LYS ILE ASN SER LEU GLU VAL GLU ALA LYS ARG LEU SEQRES 3 A 71 GLN GLY PHE ASN GLU TYR VAL GLN GLU ARG LEU ASP ARG SEQRES 4 A 71 ILE THR ASP ASP PHE VAL LYS MET LYS ASP ASN PHE GLU SEQRES 5 A 71 THR LEU ARG THR GLU LEU SER GLU ALA GLN GLN LYS LEU SEQRES 6 A 71 ARG ARG GLN GLN ASP ASN SEQRES 1 B 71 SER PHE ASP ARG LEU LEU ALA GLU ASN GLU SER LEU GLN SEQRES 2 B 71 GLN LYS ILE ASN SER LEU GLU VAL GLU ALA LYS ARG LEU SEQRES 3 B 71 GLN GLY PHE ASN GLU TYR VAL GLN GLU ARG LEU ASP ARG SEQRES 4 B 71 ILE THR ASP ASP PHE VAL LYS MET LYS ASP ASN PHE GLU SEQRES 5 B 71 THR LEU ARG THR GLU LEU SER GLU ALA GLN GLN LYS LEU SEQRES 6 B 71 ARG ARG GLN GLN ASP ASN HELIX 1 AA1 PHE A 206 ARG A 270 1 65 HELIX 2 AA2 PHE B 206 ARG B 270 1 65 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1