HEADER HYDROLASE 10-JUL-20 6XQV TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF PBP2 S310A FROM NEISSERIA TITLE 2 GONORRHOEAE IN A PRE-ACYLATION COMPLEX WITH CEFTRIAXONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE PEPTIDOGLYCAN D,D-TRANSPEPTIDASE PENA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PENICILLIN-BINDING PROTEIN 2,PBP-2; COMPND 5 EC: 3.4.16.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 3 ORGANISM_TAXID: 485; SOURCE 4 GENE: PENA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PBP2, BETA-LACTAM, ANTIBIOTIC TARGET, CEFTRIAXONE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.A.FENTON,P.ZHOU,C.DAVIES REVDAT 3 18-OCT-23 6XQV 1 REMARK REVDAT 2 02-FEB-22 6XQV 1 JRNL REVDAT 1 21-JUL-21 6XQV 0 JRNL AUTH B.A.FENTON,J.TOMBERG,C.A.SCIANDRA,R.A.NICHOLAS,C.DAVIES, JRNL AUTH 2 P.ZHOU JRNL TITL MUTATIONS IN PBP2 FROM CEFTRIAXONE-RESISTANT NEISSERIA JRNL TITL 2 GONORRHOEAE ALTER THE DYNAMICS OF THE BETA 3-BETA 4 LOOP TO JRNL TITL 3 FAVOR A LOW-AFFINITY DRUG-BINDING STATE. JRNL REF J.BIOL.CHEM. V. 297 01188 2021 JRNL REFN ESSN 1083-351X JRNL PMID 34529975 JRNL DOI 10.1016/J.JBC.2021.101188 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 35912 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1795 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.8400 - 4.8200 0.98 2659 140 0.1609 0.1638 REMARK 3 2 4.8200 - 3.8300 1.00 2661 140 0.1421 0.1738 REMARK 3 3 3.8200 - 3.3400 0.99 2629 137 0.1567 0.1911 REMARK 3 4 3.3400 - 3.0400 1.00 2618 138 0.1716 0.2087 REMARK 3 5 3.0400 - 2.8200 1.00 2619 138 0.1712 0.1999 REMARK 3 6 2.8200 - 2.6500 1.00 2637 139 0.1722 0.2302 REMARK 3 7 2.6500 - 2.5200 1.00 2599 137 0.1744 0.2200 REMARK 3 8 2.5200 - 2.4100 1.00 2653 140 0.1734 0.2313 REMARK 3 9 2.4100 - 2.3200 0.99 2621 137 0.1819 0.2398 REMARK 3 10 2.3200 - 2.2400 0.99 2580 136 0.1927 0.2545 REMARK 3 11 2.2400 - 2.1700 1.00 2624 138 0.1950 0.2202 REMARK 3 12 2.1700 - 2.1100 1.00 2607 138 0.2132 0.2605 REMARK 3 13 2.1100 - 2.0500 0.99 2610 137 0.2221 0.2605 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.181 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.688 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5322 REMARK 3 ANGLE : 0.961 7253 REMARK 3 CHIRALITY : 0.050 796 REMARK 3 PLANARITY : 0.005 948 REMARK 3 DIHEDRAL : 15.555 2092 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 235 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5159 24.2443 7.1331 REMARK 3 T TENSOR REMARK 3 T11: 0.1972 T22: 0.3301 REMARK 3 T33: 0.2031 T12: -0.0678 REMARK 3 T13: 0.0956 T23: -0.0822 REMARK 3 L TENSOR REMARK 3 L11: 1.3571 L22: 0.6440 REMARK 3 L33: 0.9263 L12: 0.1602 REMARK 3 L13: -0.0350 L23: -0.1068 REMARK 3 S TENSOR REMARK 3 S11: 0.2851 S12: -0.5171 S13: 0.0126 REMARK 3 S21: 0.5220 S22: -0.4418 S23: 0.2901 REMARK 3 S31: 0.1504 S32: -0.1517 S33: 0.5271 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 295 THROUGH 354 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4729 33.3908 -13.2176 REMARK 3 T TENSOR REMARK 3 T11: 0.1956 T22: 0.1274 REMARK 3 T33: 0.1969 T12: -0.0238 REMARK 3 T13: 0.0021 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.3797 L22: 0.5430 REMARK 3 L33: 1.0804 L12: 0.4534 REMARK 3 L13: 0.1711 L23: -0.2232 REMARK 3 S TENSOR REMARK 3 S11: 0.0077 S12: -0.0740 S13: 0.1285 REMARK 3 S21: -0.1061 S22: -0.0390 S23: 0.1082 REMARK 3 S31: -0.2065 S32: 0.0265 S33: -0.0184 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 355 THROUGH 405 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7931 26.0337 -15.7213 REMARK 3 T TENSOR REMARK 3 T11: 0.1857 T22: 0.1565 REMARK 3 T33: 0.1643 T12: -0.0187 REMARK 3 T13: -0.0033 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.3770 L22: 0.5595 REMARK 3 L33: 0.9027 L12: -0.3060 REMARK 3 L13: -0.3442 L23: -0.0258 REMARK 3 S TENSOR REMARK 3 S11: -0.0901 S12: 0.1360 S13: -0.0016 REMARK 3 S21: -0.1324 S22: 0.1183 S23: 0.0894 REMARK 3 S31: -0.0615 S32: -0.0470 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 406 THROUGH 420 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3418 32.1131 -25.1068 REMARK 3 T TENSOR REMARK 3 T11: 0.3732 T22: 0.2628 REMARK 3 T33: 0.3468 T12: 0.0181 REMARK 3 T13: -0.0622 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.1086 L22: 0.0775 REMARK 3 L33: 0.0758 L12: 0.1426 REMARK 3 L13: -0.0367 L23: 0.0165 REMARK 3 S TENSOR REMARK 3 S11: -0.0739 S12: 0.1940 S13: 0.2881 REMARK 3 S21: 0.1734 S22: -0.3115 S23: -0.0515 REMARK 3 S31: -0.0070 S32: 0.0856 S33: -0.0002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 421 THROUGH 494 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1735 19.8594 -4.8069 REMARK 3 T TENSOR REMARK 3 T11: 0.1288 T22: 0.1458 REMARK 3 T33: 0.1742 T12: -0.0072 REMARK 3 T13: -0.0213 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 1.0487 L22: 0.9006 REMARK 3 L33: 1.0198 L12: 0.3198 REMARK 3 L13: -0.3460 L23: 0.0914 REMARK 3 S TENSOR REMARK 3 S11: 0.0235 S12: -0.1340 S13: -0.0521 REMARK 3 S21: 0.0728 S22: -0.0717 S23: -0.0740 REMARK 3 S31: 0.0485 S32: 0.0538 S33: -0.0006 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 495 THROUGH 544 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.0536 34.6712 -2.9174 REMARK 3 T TENSOR REMARK 3 T11: 0.1658 T22: 0.1874 REMARK 3 T33: 0.2004 T12: -0.0004 REMARK 3 T13: 0.0129 T23: -0.0569 REMARK 3 L TENSOR REMARK 3 L11: 1.7411 L22: 0.7425 REMARK 3 L33: 1.1133 L12: 0.5591 REMARK 3 L13: -0.6102 L23: 0.8161 REMARK 3 S TENSOR REMARK 3 S11: 0.1691 S12: -0.0907 S13: 0.1827 REMARK 3 S21: 0.0089 S22: -0.1689 S23: 0.1773 REMARK 3 S31: -0.1412 S32: -0.0907 S33: -0.0284 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 545 THROUGH 574 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5309 25.1039 11.0076 REMARK 3 T TENSOR REMARK 3 T11: 0.2603 T22: 0.3745 REMARK 3 T33: 0.1870 T12: -0.0946 REMARK 3 T13: -0.0216 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.8157 L22: 0.4001 REMARK 3 L33: 0.1796 L12: 0.0403 REMARK 3 L13: -0.3666 L23: 0.0170 REMARK 3 S TENSOR REMARK 3 S11: 0.0427 S12: -0.7222 S13: 0.1372 REMARK 3 S21: 0.2949 S22: -0.0912 S23: -0.2583 REMARK 3 S31: 0.0150 S32: 0.0279 S33: -0.0025 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 235 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.0972 13.7892 -50.4994 REMARK 3 T TENSOR REMARK 3 T11: 0.2274 T22: 0.2700 REMARK 3 T33: 0.2260 T12: 0.0142 REMARK 3 T13: -0.0100 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.7546 L22: 1.3013 REMARK 3 L33: 0.8562 L12: -1.0269 REMARK 3 L13: 0.1502 L23: -0.1457 REMARK 3 S TENSOR REMARK 3 S11: 0.0348 S12: 0.4736 S13: 0.1937 REMARK 3 S21: -0.1747 S22: 0.0145 S23: 0.1477 REMARK 3 S31: -0.2315 S32: 0.0202 S33: 0.0032 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 295 THROUGH 344 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0475 0.6503 -29.8473 REMARK 3 T TENSOR REMARK 3 T11: 0.2219 T22: 0.1727 REMARK 3 T33: 0.1885 T12: -0.0102 REMARK 3 T13: -0.0075 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.6031 L22: 0.9315 REMARK 3 L33: 0.2609 L12: 0.1191 REMARK 3 L13: -0.4669 L23: 0.2577 REMARK 3 S TENSOR REMARK 3 S11: -0.0644 S12: -0.0175 S13: 0.0148 REMARK 3 S21: 0.0360 S22: -0.0126 S23: 0.0393 REMARK 3 S31: 0.0537 S32: -0.0215 S33: 0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 345 THROUGH 405 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5697 4.1998 -28.7335 REMARK 3 T TENSOR REMARK 3 T11: 0.2423 T22: 0.2210 REMARK 3 T33: 0.2229 T12: -0.0178 REMARK 3 T13: -0.0134 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 0.1821 L22: 1.3107 REMARK 3 L33: 0.9540 L12: 0.6567 REMARK 3 L13: 0.0415 L23: 0.5374 REMARK 3 S TENSOR REMARK 3 S11: -0.0509 S12: -0.0121 S13: 0.0331 REMARK 3 S21: -0.0498 S22: 0.0058 S23: 0.1006 REMARK 3 S31: 0.0008 S32: -0.0766 S33: 0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 406 THROUGH 494 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5194 8.1139 -35.7248 REMARK 3 T TENSOR REMARK 3 T11: 0.1585 T22: 0.1694 REMARK 3 T33: 0.1857 T12: -0.0221 REMARK 3 T13: 0.0040 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.6786 L22: 0.9359 REMARK 3 L33: 1.4754 L12: -0.1503 REMARK 3 L13: 0.1327 L23: 0.0714 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: 0.0732 S13: 0.0306 REMARK 3 S21: 0.0396 S22: -0.0225 S23: 0.0078 REMARK 3 S31: -0.0237 S32: 0.0377 S33: 0.0000 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 495 THROUGH 574 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.2225 3.3213 -45.0569 REMARK 3 T TENSOR REMARK 3 T11: 0.1835 T22: 0.2452 REMARK 3 T33: 0.1861 T12: -0.0076 REMARK 3 T13: 0.0010 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 0.8305 L22: 1.6134 REMARK 3 L33: 0.1614 L12: -0.5968 REMARK 3 L13: 0.5156 L23: 0.1375 REMARK 3 S TENSOR REMARK 3 S11: -0.0895 S12: -0.1710 S13: -0.0320 REMARK 3 S21: -0.0284 S22: -0.0216 S23: 0.2493 REMARK 3 S31: -0.0078 S32: -0.0243 S33: -0.0027 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XQV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-20. REMARK 100 THE DEPOSITION ID IS D_1000250400. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35913 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 43.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.330 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.17.1_3660 REMARK 200 STARTING MODEL: 6P53 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11% PEG 3350, 0.075 M POTASSIUM REMARK 280 SULFATE, 12.5 MM TRIS (PH 7.5), 50 MM KCL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.99500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 440 41.72 -91.88 REMARK 500 LEU A 447 153.38 79.17 REMARK 500 ASN A 506 -93.46 56.96 REMARK 500 ARG B 298 152.04 75.75 REMARK 500 SER B 362 65.54 66.35 REMARK 500 HIS B 440 38.55 -92.68 REMARK 500 LEU B 447 158.97 80.39 REMARK 500 VAL B 505 -121.07 -107.40 REMARK 500 ASN B 506 69.49 -104.33 REMARK 500 TYR B 543 -3.62 -143.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9F2 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9F2 B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9F2 B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 603 DBREF 6XQV A 237 295 UNP P08149 PBP2_NEIGO 237 282 DBREF 6XQV A 298 574 UNP P08149 PBP2_NEIGO 298 574 DBREF 6XQV B 237 295 UNP P08149 PBP2_NEIGO 237 282 DBREF 6XQV B 298 574 UNP P08149 PBP2_NEIGO 298 574 SEQADV 6XQV ASP A 235 UNP P08149 EXPRESSION TAG SEQADV 6XQV MET A 236 UNP P08149 EXPRESSION TAG SEQADV 6XQV GLY A 296 UNP P08149 LINKER SEQADV 6XQV GLY A 297 UNP P08149 LINKER SEQADV 6XQV ALA A 310 UNP P08149 SER 310 ENGINEERED MUTATION SEQADV 6XQV ASP B 235 UNP P08149 EXPRESSION TAG SEQADV 6XQV MET B 236 UNP P08149 EXPRESSION TAG SEQADV 6XQV GLY B 296 UNP P08149 LINKER SEQADV 6XQV GLY B 297 UNP P08149 LINKER SEQADV 6XQV ALA B 310 UNP P08149 SER 310 ENGINEERED MUTATION SEQRES 1 A 327 ASP MET LEU SER LEU ASP GLN ARG ILE GLN THR LEU ALA SEQRES 2 A 327 TYR GLU GLU LEU ASN LYS ALA VAL GLU TYR HIS GLN ALA SEQRES 3 A 327 LYS ALA GLY THR VAL VAL VAL LEU ASP ALA ARG THR GLY SEQRES 4 A 327 GLU ILE LEU ALA LEU ALA ASN THR PRO GLY GLY ARG ASN SEQRES 5 A 327 ARG ALA VAL THR ASP MET ILE GLU PRO GLY ALA ALA ILE SEQRES 6 A 327 LYS PRO PHE VAL ILE ALA LYS ALA LEU ASP ALA GLY LYS SEQRES 7 A 327 THR ASP LEU ASN GLU ARG LEU ASN THR GLN PRO TYR LYS SEQRES 8 A 327 ILE GLY PRO SER PRO VAL ARG ASP THR HIS VAL TYR PRO SEQRES 9 A 327 SER LEU ASP VAL ARG GLY ILE MET GLN LYS SER SER ASN SEQRES 10 A 327 VAL GLY THR SER LYS LEU SER ALA ARG PHE GLY ALA GLU SEQRES 11 A 327 GLU MET TYR ASP PHE TYR HIS GLU LEU GLY ILE GLY VAL SEQRES 12 A 327 ARG MET HIS SER GLY PHE PRO GLY GLU THR ALA GLY LEU SEQRES 13 A 327 LEU ARG ASN TRP ARG ARG TRP ARG PRO ILE GLU GLN ALA SEQRES 14 A 327 THR MET SER PHE GLY TYR GLY LEU GLN LEU SER LEU LEU SEQRES 15 A 327 GLN LEU ALA ARG ALA TYR THR ALA LEU THR HIS ASP GLY SEQRES 16 A 327 VAL LEU LEU PRO LEU SER PHE GLU LYS GLN ALA VAL ALA SEQRES 17 A 327 PRO GLN GLY LYS ARG ILE PHE LYS GLU SER THR ALA ARG SEQRES 18 A 327 GLU VAL ARG ASN LEU MET VAL SER VAL THR GLU PRO GLY SEQRES 19 A 327 GLY THR GLY THR ALA GLY ALA VAL ASP GLY PHE ASP VAL SEQRES 20 A 327 GLY ALA LYS THR GLY THR ALA ARG LYS PHE VAL ASN GLY SEQRES 21 A 327 ARG TYR ALA ASP ASN LYS HIS VAL ALA THR PHE ILE GLY SEQRES 22 A 327 PHE ALA PRO ALA LYS ASN PRO ARG VAL ILE VAL ALA VAL SEQRES 23 A 327 THR ILE ASP GLU PRO THR ALA HIS GLY TYR TYR GLY GLY SEQRES 24 A 327 VAL VAL ALA GLY PRO PRO PHE LYS LYS ILE MET GLY GLY SEQRES 25 A 327 SER LEU ASN ILE LEU GLY ILE SER PRO THR LYS PRO LEU SEQRES 26 A 327 THR ALA SEQRES 1 B 327 ASP MET LEU SER LEU ASP GLN ARG ILE GLN THR LEU ALA SEQRES 2 B 327 TYR GLU GLU LEU ASN LYS ALA VAL GLU TYR HIS GLN ALA SEQRES 3 B 327 LYS ALA GLY THR VAL VAL VAL LEU ASP ALA ARG THR GLY SEQRES 4 B 327 GLU ILE LEU ALA LEU ALA ASN THR PRO GLY GLY ARG ASN SEQRES 5 B 327 ARG ALA VAL THR ASP MET ILE GLU PRO GLY ALA ALA ILE SEQRES 6 B 327 LYS PRO PHE VAL ILE ALA LYS ALA LEU ASP ALA GLY LYS SEQRES 7 B 327 THR ASP LEU ASN GLU ARG LEU ASN THR GLN PRO TYR LYS SEQRES 8 B 327 ILE GLY PRO SER PRO VAL ARG ASP THR HIS VAL TYR PRO SEQRES 9 B 327 SER LEU ASP VAL ARG GLY ILE MET GLN LYS SER SER ASN SEQRES 10 B 327 VAL GLY THR SER LYS LEU SER ALA ARG PHE GLY ALA GLU SEQRES 11 B 327 GLU MET TYR ASP PHE TYR HIS GLU LEU GLY ILE GLY VAL SEQRES 12 B 327 ARG MET HIS SER GLY PHE PRO GLY GLU THR ALA GLY LEU SEQRES 13 B 327 LEU ARG ASN TRP ARG ARG TRP ARG PRO ILE GLU GLN ALA SEQRES 14 B 327 THR MET SER PHE GLY TYR GLY LEU GLN LEU SER LEU LEU SEQRES 15 B 327 GLN LEU ALA ARG ALA TYR THR ALA LEU THR HIS ASP GLY SEQRES 16 B 327 VAL LEU LEU PRO LEU SER PHE GLU LYS GLN ALA VAL ALA SEQRES 17 B 327 PRO GLN GLY LYS ARG ILE PHE LYS GLU SER THR ALA ARG SEQRES 18 B 327 GLU VAL ARG ASN LEU MET VAL SER VAL THR GLU PRO GLY SEQRES 19 B 327 GLY THR GLY THR ALA GLY ALA VAL ASP GLY PHE ASP VAL SEQRES 20 B 327 GLY ALA LYS THR GLY THR ALA ARG LYS PHE VAL ASN GLY SEQRES 21 B 327 ARG TYR ALA ASP ASN LYS HIS VAL ALA THR PHE ILE GLY SEQRES 22 B 327 PHE ALA PRO ALA LYS ASN PRO ARG VAL ILE VAL ALA VAL SEQRES 23 B 327 THR ILE ASP GLU PRO THR ALA HIS GLY TYR TYR GLY GLY SEQRES 24 B 327 VAL VAL ALA GLY PRO PRO PHE LYS LYS ILE MET GLY GLY SEQRES 25 B 327 SER LEU ASN ILE LEU GLY ILE SER PRO THR LYS PRO LEU SEQRES 26 B 327 THR ALA HET 9F2 A 601 36 HET SO4 A 602 5 HET SO4 A 603 5 HET CL A 604 1 HET 9F2 B 601 36 HET 9F2 B 602 36 HET SO4 B 603 5 HETNAM 9F2 CEFTRIAXONE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 3 9F2 3(C18 H18 N8 O7 S3) FORMUL 4 SO4 3(O4 S 2-) FORMUL 6 CL CL 1- FORMUL 10 HOH *230(H2 O) HELIX 1 AA1 ASP A 240 HIS A 258 1 19 HELIX 2 AA2 ASN A 299 ASP A 304 1 6 HELIX 3 AA3 PRO A 308 ALA A 311 5 4 HELIX 4 AA4 ILE A 312 ALA A 323 1 12 HELIX 5 AA5 VAL A 355 SER A 362 1 8 HELIX 6 AA6 SER A 363 ALA A 372 1 10 HELIX 7 AA7 GLY A 375 LEU A 386 1 12 HELIX 8 AA8 ASN A 406 TRP A 410 5 5 HELIX 9 AA9 ARG A 411 SER A 419 1 9 HELIX 10 AB1 SER A 427 HIS A 440 1 14 HELIX 11 AB2 LYS A 463 SER A 476 1 14 HELIX 12 AB3 GLY A 484 ALA A 488 5 5 HELIX 13 AB4 TYR A 544 LEU A 564 1 21 HELIX 14 AB5 ASP B 240 HIS B 258 1 19 HELIX 15 AB6 ASN B 299 ASP B 304 1 6 HELIX 16 AB7 PRO B 308 ALA B 311 5 4 HELIX 17 AB8 ILE B 312 ALA B 323 1 12 HELIX 18 AB9 VAL B 355 SER B 362 1 8 HELIX 19 AC1 SER B 363 ALA B 372 1 10 HELIX 20 AC2 GLY B 375 LEU B 386 1 12 HELIX 21 AC3 ASN B 406 TRP B 410 5 5 HELIX 22 AC4 ARG B 411 PHE B 420 1 10 HELIX 23 AC5 LEU B 428 HIS B 440 1 13 HELIX 24 AC6 LYS B 463 SER B 476 1 14 HELIX 25 AC7 GLY B 484 ALA B 488 5 5 HELIX 26 AC8 TYR B 544 LEU B 564 1 21 SHEET 1 AA1 5 ILE A 288 THR A 294 0 SHEET 2 AA1 5 ALA A 262 ASP A 269 -1 N VAL A 267 O LEU A 289 SHEET 3 AA1 5 VAL A 529 ASP A 536 -1 O ASP A 536 N ALA A 262 SHEET 4 AA1 5 ARG A 508 ALA A 522 -1 N ALA A 516 O ILE A 535 SHEET 5 AA1 5 GLY A 495 VAL A 505 -1 N GLY A 499 O THR A 517 SHEET 1 AA2 2 ARG A 331 ASN A 333 0 SHEET 2 AA2 2 SER A 352 ASP A 354 -1 O LEU A 353 N LEU A 332 SHEET 1 AA3 2 TYR A 337 ILE A 339 0 SHEET 2 AA3 2 SER A 342 VAL A 344 -1 O VAL A 344 N TYR A 337 SHEET 1 AA4 2 VAL A 443 LEU A 444 0 SHEET 2 AA4 2 LYS A 459 ARG A 460 -1 O LYS A 459 N LEU A 444 SHEET 1 AA5 5 ILE B 288 THR B 294 0 SHEET 2 AA5 5 ALA B 262 ASP B 269 -1 N VAL B 265 O ALA B 292 SHEET 3 AA5 5 VAL B 529 ASP B 536 -1 O ASP B 536 N ALA B 262 SHEET 4 AA5 5 TYR B 509 ALA B 522 -1 N ALA B 516 O ILE B 535 SHEET 5 AA5 5 GLY B 495 PHE B 504 -1 N GLY B 499 O THR B 517 SHEET 1 AA6 2 MET B 305 ILE B 306 0 SHEET 2 AA6 2 LEU B 426 SER B 427 -1 O LEU B 426 N ILE B 306 SHEET 1 AA7 2 ARG B 331 ASN B 333 0 SHEET 2 AA7 2 SER B 352 ASP B 354 -1 O LEU B 353 N LEU B 332 SHEET 1 AA8 2 TYR B 337 ILE B 339 0 SHEET 2 AA8 2 SER B 342 VAL B 344 -1 O VAL B 344 N TYR B 337 SHEET 1 AA9 2 VAL B 443 LEU B 444 0 SHEET 2 AA9 2 LYS B 459 ARG B 460 -1 O LYS B 459 N LEU B 444 CISPEP 1 THR A 294 PRO A 295 0 0.46 CISPEP 2 THR A 294 PRO A 295 0 -5.45 CISPEP 3 ALA A 522 PRO A 523 0 -13.99 CISPEP 4 THR B 294 PRO B 295 0 -6.36 CISPEP 5 ALA B 522 PRO B 523 0 -12.84 SITE 1 AC1 20 GLU A 307 ALA A 310 THR A 347 SER A 362 SITE 2 AC1 20 ASN A 364 GLY A 421 TYR A 422 LYS A 497 SITE 3 AC1 20 THR A 498 GLY A 499 THR A 500 ALA A 501 SITE 4 AC1 20 ARG A 502 TYR A 509 TYR A 544 GLY A 545 SITE 5 AC1 20 VAL A 547 HOH A 703 HOH A 757 HOH A 768 SITE 1 AC2 5 ARG A 391 HIS A 393 HOH A 707 ASN B 406 SITE 2 AC2 5 ARG B 409 SITE 1 AC3 4 ASN A 406 ARG A 409 ARG B 391 HIS B 393 SITE 1 AC4 2 HIS A 440 PRO A 456 SITE 1 AC5 20 GLU B 307 ALA B 310 THR B 347 SER B 362 SITE 2 AC5 20 ASN B 364 PHE B 420 GLY B 421 TYR B 422 SITE 3 AC5 20 THR B 483 LYS B 497 THR B 498 GLY B 499 SITE 4 AC5 20 THR B 500 ALA B 501 ARG B 502 TYR B 509 SITE 5 AC5 20 TYR B 544 GLY B 546 VAL B 547 HOH B 730 SITE 1 AC6 7 THR B 347 HIS B 348 VAL B 349 TYR B 350 SITE 2 AC6 7 PRO B 351 LEU B 353 LYS B 361 SITE 1 AC7 5 GLU B 464 SER B 465 LYS B 503 PHE B 504 SITE 2 AC7 5 HOH B 701 CRYST1 42.600 77.990 87.690 90.00 91.11 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023474 0.000000 0.000454 0.00000 SCALE2 0.000000 0.012822 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011406 0.00000