data_6XRQ # _entry.id 6XRQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6XRQ pdb_00006xrq 10.2210/pdb6xrq/pdb WWPDB D_1000250186 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6XRQ _pdbx_database_status.recvd_initial_deposition_date 2020-07-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhang, Y.S.' 1 0000-0002-4948-6449 'Parkinson, G.N.' 2 0000-0002-1865-9685 'Wei, D.G.' 3 0000-0001-7776-7320 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structural descriptions of ligand interactions to DNA and RNA quadruplexes folded from the non-coding region of Pseudorabies virus' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, Y.S.' 1 0000-0002-4948-6449 primary 'Parkinson, G.N.' 2 0000-0002-1865-9685 primary 'Wei, D.G.' 3 0000-0001-7776-7320 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd 0.00000000 _cell.angle_beta 108.390 _cell.angle_beta_esd 0.00070702 _cell.angle_gamma 90.000 _cell.angle_gamma_esd 0.00000000 _cell.entry_id 6XRQ _cell.details ? _cell.formula_units_Z 2 _cell.length_a 29.177 _cell.length_a_esd 0.00024459 _cell.length_b 43.974 _cell.length_b_esd 0.00044533 _cell.length_c 30.781 _cell.length_c_esd 0.00025078 _cell.volume 37453.405960 _cell.volume_esd 0.436930 _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6XRQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5' GP*GP*CP*UP*CP*GP*GP*CP*GP*GP*CP*GP*GP*A-3') ; 4572.788 2 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 3 ? ? ? ? 3 non-polymer syn '2,7-bis[3-(morpholin-4-yl)propyl]-4,9-bis{[3-(morpholin-4-yl)propyl]amino}benzo[lmn][3,8]phenanthroline-1,3,6,8(2H,7H)-tetrone' 804.975 2 ? ? ? ? 4 water nat water 18.015 97 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGCUCGGCGGCGGA _entity_poly.pdbx_seq_one_letter_code_can GGCUCGGCGGCGGA _entity_poly.pdbx_strand_id B,A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 U n 1 5 C n 1 6 G n 1 7 G n 1 8 C n 1 9 G n 1 10 G n 1 11 C n 1 12 G n 1 13 G n 1 14 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 14 _pdbx_entity_src_syn.organism_scientific 'Pseudorabies virus Ea' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 101947 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6XRQ _struct_ref.pdbx_db_accession 6XRQ _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6XRQ B 1 ? 14 ? 6XRQ 1 ? 14 ? 1 14 2 1 6XRQ A 1 ? 14 ? 6XRQ 1 ? 14 ? 1 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 V8A non-polymer . '2,7-bis[3-(morpholin-4-yl)propyl]-4,9-bis{[3-(morpholin-4-yl)propyl]amino}benzo[lmn][3,8]phenanthroline-1,3,6,8(2H,7H)-tetrone' ? 'C42 H60 N8 O8' 804.975 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max 1.0 _exptl.absorpt_correction_T_min 0.949905760669 _exptl.absorpt_correction_type empirical _exptl.absorpt_process_details ;CCP4 7.0.075: AIMLESS, version 0.7.4 : 13/12/18 Scaling & analysis of unmerged intensities, absorption correction using spherical harmonics ; _exptl.entry_id 6XRQ _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.05 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 39.97 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity 0.000 _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 283 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Potassium cacodylate, Potassium chloride, Sodium cacodylate, MPD' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-09-29 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator si _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.96864 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I24' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.96864 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I24 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6XRQ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.210 _reflns.d_resolution_low 27.703 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 21248 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 94.100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.700 _reflns.pdbx_Rmerge_I_obs 0.066 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.800 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.072 _reflns.pdbx_Rpim_I_all 0.028 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 1.210 1.230 ? ? ? ? ? ? 628 56.500 ? ? ? ? 0.599 ? ? ? ? ? ? ? ? 3.100 ? ? ? ? 0.718 0.387 ? 1 1 0.853 ? ? 6.630 27.703 ? ? ? ? ? ? 151 99.300 ? ? ? ? 0.073 ? ? ? ? ? ? ? ? 6.200 ? ? ? ? 0.080 0.032 ? 2 1 0.989 ? ? # _refine.aniso_B[1][1] -0.412 _refine.aniso_B[1][2] -0.000 _refine.aniso_B[1][3] -0.107 _refine.aniso_B[2][2] 1.500 _refine.aniso_B[2][3] -0.000 _refine.aniso_B[3][3] -0.833 _refine.B_iso_max ? _refine.B_iso_mean 17.820 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.963 _refine.correlation_coeff_Fo_to_Fc_free 0.953 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6XRQ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.210 _refine.ls_d_res_low 27.690 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 21227 _refine.ls_number_reflns_R_free 1025 _refine.ls_number_reflns_R_work 20202 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 93.879 _refine.ls_percent_reflns_R_free 4.829 _refine.ls_R_factor_all 0.200 _refine.ls_R_factor_obs 0.1999 _refine.ls_R_factor_R_free 0.2170 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1990 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 6JJH _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details 'Random Selection' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.056 _refine.pdbx_overall_ESU_R_Free 0.056 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 0.926 _refine.overall_SU_ML 0.040 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.210 _refine_hist.d_res_low 27.690 _refine_hist.number_atoms_solvent 97 _refine_hist.number_atoms_total 822 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 28 _refine_hist.pdbx_B_iso_mean_ligand 18.26 _refine_hist.pdbx_B_iso_mean_solvent 27.65 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 606 _refine_hist.pdbx_number_atoms_ligand 119 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.025 0.012 853 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.004 0.020 290 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.001 1.489 1283 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.820 3.000 696 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 0.120 0.200 116 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.032 0.020 418 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.005 0.020 168 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.237 0.200 138 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.228 0.200 342 ? r_symmetry_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.274 0.200 319 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? 0.063 0.200 142 ? r_symmetry_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.120 0.200 67 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.063 0.200 2 ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? 0.129 0.200 32 ? r_symmetry_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.203 0.200 23 ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.068 0.200 8 ? r_symmetry_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 1.917 1.747 853 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 1.832 1.738 724 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 2.943 2.633 1283 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 2.828 2.647 1104 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 4.100 26.179 3561 ? r_lrange_it ? ? 'X-RAY DIFFRACTION' ? 3.947 27.386 2942 ? r_lrange_other ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.210 1.241 . . 56 917 58.5792 . . . 0.319 . 0.337 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.241 1.275 . . 49 1127 72.5478 . . . 0.372 . 0.302 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.275 1.312 . . 66 1309 87.6354 . . . 0.329 . 0.285 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.312 1.353 . . 69 1420 96.4378 . . . 0.287 . 0.268 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.353 1.397 . . 71 1404 100.0000 . . . 0.310 . 0.235 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.397 1.446 . . 49 1375 100.0000 . . . 0.308 . 0.235 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.446 1.500 . . 50 1315 100.0000 . . . 0.224 . 0.234 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.500 1.561 . . 48 1318 99.9268 . . . 0.259 . 0.205 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.561 1.631 . . 66 1224 100.0000 . . . 0.179 . 0.182 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.631 1.710 . . 63 1157 100.0000 . . . 0.175 . 0.176 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.710 1.802 . . 61 1097 100.0000 . . . 0.215 . 0.172 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.802 1.911 . . 64 1039 100.0000 . . . 0.205 . 0.193 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.911 2.042 . . 56 995 100.0000 . . . 0.223 . 0.188 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.042 2.205 . . 47 925 100.0000 . . . 0.191 . 0.187 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.205 2.414 . . 50 831 100.0000 . . . 0.178 . 0.204 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.414 2.697 . . 62 759 100.0000 . . . 0.232 . 0.193 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.697 3.109 . . 42 677 100.0000 . . . 0.192 . 0.202 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.109 3.797 . . 36 574 100.0000 . . . 0.208 . 0.168 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.797 5.325 . . 16 457 100.0000 . . . 0.200 . 0.164 . . . . . . . . . . . 'X-RAY DIFFRACTION' 5.325 27.69 . . 4 282 100.0000 . . . 0.392 . 0.255 . . . . . . . . . . . # _struct.entry_id 6XRQ _struct.title 'Structural descriptions of ligand interactions to DNA and RNA quadruplexes folded from the non-coding region of Pseudorabies virus' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6XRQ _struct_keywords.text 'Quadruplex, RNA, PRV' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 1 O6 ? ? ? 1_555 C K . K ? ? B G 1 B K 101 1_555 ? ? ? ? ? ? ? 2.691 ? ? metalc2 metalc ? ? A G 2 O6 ? ? ? 1_555 C K . K ? ? B G 2 B K 101 1_555 ? ? ? ? ? ? ? 2.885 ? ? metalc3 metalc ? ? A G 2 O6 ? ? ? 1_555 D K . K ? ? B G 2 B K 102 1_555 ? ? ? ? ? ? ? 2.733 ? ? metalc4 metalc ? ? A G 6 O6 ? ? ? 1_555 C K . K ? ? B G 6 B K 101 1_555 ? ? ? ? ? ? ? 2.676 ? ? metalc5 metalc ? ? A G 7 O6 A ? ? 1_555 C K . K ? ? B G 7 B K 101 1_555 ? ? ? ? ? ? ? 2.745 ? ? metalc6 metalc ? ? A G 7 O6 B ? ? 1_555 C K . K ? ? B G 7 B K 101 1_555 ? ? ? ? ? ? ? 2.906 ? ? metalc7 metalc ? ? A G 7 O6 A ? ? 1_555 D K . K ? ? B G 7 B K 102 1_555 ? ? ? ? ? ? ? 2.739 ? ? metalc8 metalc ? ? A G 7 O6 B ? ? 1_555 D K . K ? ? B G 7 B K 102 1_555 ? ? ? ? ? ? ? 2.885 ? ? metalc9 metalc ? ? A G 9 O6 ? ? ? 1_555 D K . K ? ? B G 9 B K 102 1_555 ? ? ? ? ? ? ? 2.755 ? ? metalc10 metalc ? ? A G 9 O6 ? ? ? 1_555 E K . K ? ? B G 9 A K 101 1_555 ? ? ? ? ? ? ? 2.813 ? ? metalc11 metalc ? ? A G 10 O6 ? ? ? 1_555 E K . K ? ? B G 10 A K 101 1_555 ? ? ? ? ? ? ? 2.705 ? ? metalc12 metalc ? ? A G 12 O6 ? ? ? 1_555 D K . K ? ? B G 12 B K 102 1_555 ? ? ? ? ? ? ? 2.789 ? ? metalc13 metalc ? ? A G 12 O6 ? ? ? 1_555 E K . K ? ? B G 12 A K 101 1_555 ? ? ? ? ? ? ? 2.899 ? ? metalc14 metalc ? ? A G 13 O6 ? ? ? 1_555 E K . K ? ? B G 13 A K 101 1_555 ? ? ? ? ? ? ? 2.701 ? ? metalc15 metalc ? ? C K . K ? ? ? 1_555 B G 1 O6 ? ? B K 101 A G 1 1_555 ? ? ? ? ? ? ? 2.683 ? ? metalc16 metalc ? ? C K . K ? ? ? 1_555 B G 2 O6 ? ? B K 101 A G 2 1_555 ? ? ? ? ? ? ? 2.914 ? ? metalc17 metalc ? ? C K . K ? ? ? 1_555 B G 6 O6 ? ? B K 101 A G 6 1_555 ? ? ? ? ? ? ? 2.646 ? ? metalc18 metalc ? ? C K . K ? ? ? 1_555 B G 7 O6 ? ? B K 101 A G 7 1_555 ? ? ? ? ? ? ? 2.791 ? ? metalc19 metalc ? ? D K . K ? ? ? 1_555 B G 2 O6 ? ? B K 102 A G 2 1_555 ? ? ? ? ? ? ? 2.704 ? ? metalc20 metalc ? ? D K . K ? ? ? 1_555 B G 7 O6 ? ? B K 102 A G 7 1_555 ? ? ? ? ? ? ? 2.744 ? ? metalc21 metalc ? ? D K . K ? ? ? 1_555 B G 9 O6 ? ? B K 102 A G 9 1_555 ? ? ? ? ? ? ? 2.733 ? ? metalc22 metalc ? ? D K . K ? ? ? 1_555 B G 12 O6 ? ? B K 102 A G 12 1_555 ? ? ? ? ? ? ? 2.765 ? ? metalc23 metalc ? ? B G 9 O6 ? ? ? 1_555 E K . K ? ? A G 9 A K 101 1_555 ? ? ? ? ? ? ? 2.933 ? ? metalc24 metalc ? ? B G 10 O6 ? ? ? 1_555 E K . K ? ? A G 10 A K 101 1_555 ? ? ? ? ? ? ? 2.669 ? ? metalc25 metalc ? ? B G 12 O6 ? ? ? 1_555 E K . K ? ? A G 12 A K 101 1_555 ? ? ? ? ? ? ? 2.855 ? ? metalc26 metalc ? ? B G 13 O6 ? ? ? 1_555 E K . K ? ? A G 13 A K 101 1_555 ? ? ? ? ? ? ? 2.660 ? ? hydrog1 hydrog ? ? B G 1 N1 ? ? ? 1_555 B G 6 O6 ? ? A G 1 A G 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? B G 1 N2 ? ? ? 1_555 B G 6 N7 ? ? A G 1 A G 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? B G 2 N1 ? ? ? 1_555 B G 7 O6 ? ? A G 2 A G 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? B G 2 N2 ? ? ? 1_555 B G 7 N7 ? ? A G 2 A G 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? B G 9 N1 ? ? ? 1_555 B G 12 O6 ? ? A G 9 A G 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? B G 9 N2 ? ? ? 1_555 B G 12 N7 ? ? A G 9 A G 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? B G 10 N1 ? ? ? 1_555 B G 13 O6 ? ? A G 10 A G 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? B G 10 N2 ? ? ? 1_555 B G 13 N7 ? ? A G 10 A G 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A G 1 N7 ? ? ? 1_555 B G 6 N2 ? ? B G 1 A G 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A G 1 O6 ? ? ? 1_555 B G 6 N1 ? ? B G 1 A G 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A G 1 N1 ? ? ? 1_555 A G 6 O6 ? ? B G 1 B G 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A G 1 N2 ? ? ? 1_555 A G 6 N7 ? ? B G 1 B G 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A G 2 N7 ? ? ? 1_555 B G 7 N2 ? ? B G 2 A G 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A G 2 O6 ? ? ? 1_555 B G 7 N1 ? ? B G 2 A G 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A G 2 N1 ? ? ? 1_555 A G 7 O6 A ? B G 2 B G 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A G 2 N1 ? ? ? 1_555 A G 7 O6 B ? B G 2 B G 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A G 2 N2 ? ? ? 1_555 A G 7 N7 A ? B G 2 B G 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A G 2 N2 ? ? ? 1_555 A G 7 N7 B ? B G 2 B G 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A C 5 N4 ? ? ? 1_555 B C 5 O2 ? ? B C 5 A C 5 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog20 hydrog ? ? A C 5 O2 ? ? ? 1_555 B C 5 N4 ? ? B C 5 A C 5 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog21 hydrog ? ? A G 6 N1 ? ? ? 1_555 B G 1 O6 ? ? B G 6 A G 1 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A G 6 N2 ? ? ? 1_555 B G 1 N7 ? ? B G 6 A G 1 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A G 7 N1 A ? ? 1_555 B G 2 O6 ? ? B G 7 A G 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A G 7 N1 B ? ? 1_555 B G 2 O6 ? ? B G 7 A G 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A G 7 N2 A ? ? 1_555 B G 2 N7 ? ? B G 7 A G 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A G 7 N2 B ? ? 1_555 B G 2 N7 ? ? B G 7 A G 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A G 9 N7 ? ? ? 1_555 B G 12 N2 ? ? B G 9 A G 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A G 9 O6 ? ? ? 1_555 B G 12 N1 ? ? B G 9 A G 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? A G 9 N1 ? ? ? 1_555 A G 12 O6 ? ? B G 9 B G 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? A G 9 N2 ? ? ? 1_555 A G 12 N7 ? ? B G 9 B G 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? A G 10 N7 ? ? ? 1_555 B G 13 N2 ? ? B G 10 A G 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? A G 10 O6 ? ? ? 1_555 B G 13 N1 ? ? B G 10 A G 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? A G 10 N1 ? ? ? 1_555 A G 13 O6 ? ? B G 10 B G 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog34 hydrog ? ? A G 10 N2 ? ? ? 1_555 A G 13 N7 ? ? B G 10 B G 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog35 hydrog ? ? A G 12 N1 ? ? ? 1_555 B G 9 O6 ? ? B G 12 A G 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog36 hydrog ? ? A G 12 N2 ? ? ? 1_555 B G 9 N7 ? ? B G 12 A G 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog37 hydrog ? ? A G 13 N1 ? ? ? 1_555 B G 10 O6 ? ? B G 13 A G 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog38 hydrog ? ? A G 13 N2 ? ? ? 1_555 B G 10 N7 ? ? B G 13 A G 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B K 101 ? 9 'binding site for residue K B 101' AC2 Software B K 102 ? 10 'binding site for residue K B 102' AC3 Software A K 101 ? 9 'binding site for residue K A 101' AC4 Software A V8A 102 ? 11 'binding site for residue V8A A 102' AC5 Software A V8A 103 ? 7 'binding site for residue V8A A 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 G B 1 ? G A 1 . ? 1_555 ? 2 AC1 9 G B 2 ? G A 2 . ? 1_555 ? 3 AC1 9 G B 6 ? G A 6 . ? 1_555 ? 4 AC1 9 G B 7 ? G A 7 . ? 1_555 ? 5 AC1 9 G A 1 ? G B 1 . ? 1_555 ? 6 AC1 9 G A 2 ? G B 2 . ? 1_555 ? 7 AC1 9 G A 6 ? G B 6 . ? 1_555 ? 8 AC1 9 G A 7 ? G B 7 . ? 1_555 ? 9 AC1 9 K D . ? K B 102 . ? 1_555 ? 10 AC2 10 G B 2 ? G A 2 . ? 1_555 ? 11 AC2 10 G B 7 ? G A 7 . ? 1_555 ? 12 AC2 10 G B 9 ? G A 9 . ? 1_555 ? 13 AC2 10 G B 12 ? G A 12 . ? 1_555 ? 14 AC2 10 K E . ? K A 101 . ? 1_555 ? 15 AC2 10 G A 2 ? G B 2 . ? 1_555 ? 16 AC2 10 G A 7 ? G B 7 . ? 1_555 ? 17 AC2 10 G A 9 ? G B 9 . ? 1_555 ? 18 AC2 10 G A 12 ? G B 12 . ? 1_555 ? 19 AC2 10 K C . ? K B 101 . ? 1_555 ? 20 AC3 9 G B 9 ? G A 9 . ? 1_555 ? 21 AC3 9 G B 10 ? G A 10 . ? 1_555 ? 22 AC3 9 G B 12 ? G A 12 . ? 1_555 ? 23 AC3 9 G B 13 ? G A 13 . ? 1_555 ? 24 AC3 9 G A 9 ? G B 9 . ? 1_555 ? 25 AC3 9 G A 10 ? G B 10 . ? 1_555 ? 26 AC3 9 G A 12 ? G B 12 . ? 1_555 ? 27 AC3 9 G A 13 ? G B 13 . ? 1_555 ? 28 AC3 9 K D . ? K B 102 . ? 1_555 ? 29 AC4 11 G B 1 ? G A 1 . ? 1_555 ? 30 AC4 11 C B 3 ? C A 3 . ? 1_555 ? 31 AC4 11 C B 5 ? C A 5 . ? 1_555 ? 32 AC4 11 G B 6 ? G A 6 . ? 1_555 ? 33 AC4 11 HOH I . ? HOH A 212 . ? 1_555 ? 34 AC4 11 HOH I . ? HOH A 229 . ? 1_555 ? 35 AC4 11 HOH I . ? HOH A 231 . ? 1_555 ? 36 AC4 11 G A 1 ? G B 1 . ? 1_555 ? 37 AC4 11 C A 3 ? C B 3 . ? 1_555 ? 38 AC4 11 C A 5 ? C B 5 . ? 1_555 ? 39 AC4 11 G A 6 ? G B 6 . ? 1_555 ? 40 AC5 7 G B 10 ? G A 10 . ? 1_555 ? 41 AC5 7 G B 13 ? G A 13 . ? 1_555 ? 42 AC5 7 A B 14 ? A A 14 . ? 1_555 ? 43 AC5 7 HOH I . ? HOH A 210 . ? 1_555 ? 44 AC5 7 G A 10 ? G B 10 . ? 1_555 ? 45 AC5 7 G A 13 ? G B 13 . ? 1_555 ? 46 AC5 7 A A 14 ? A B 14 . ? 1_555 ? # _atom_sites.entry_id 6XRQ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.034274 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.011391 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022741 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.034235 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.310 20.844 1.020 10.208 1.589 0.569 0.865 51.651 0.216 H 1 1 0.493 10.511 0.323 26.126 0.140 3.142 0.041 57.800 0.003 K 19 19 8.219 12.795 7.440 0.775 1.052 213.187 0.866 41.684 1.689 N 7 7 12.222 0.006 3.135 9.893 2.014 28.997 1.167 0.583 -11.538 O 8 8 3.049 13.277 2.287 5.701 1.546 0.324 0.867 32.909 0.251 P 15 15 6.435 1.907 4.179 27.157 1.780 0.526 1.491 68.164 1.265 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G B . n A 1 2 G 2 2 2 G G B . n A 1 3 C 3 3 3 C C B . n A 1 4 U 4 4 4 U U B . n A 1 5 C 5 5 5 C C B . n A 1 6 G 6 6 6 G G B . n A 1 7 G 7 7 7 G G B . n A 1 8 C 8 8 8 C C B . n A 1 9 G 9 9 9 G G B . n A 1 10 G 10 10 10 G G B . n A 1 11 C 11 11 11 C C B . n A 1 12 G 12 12 12 G G B . n A 1 13 G 13 13 13 G G B . n A 1 14 A 14 14 14 A A B . n B 1 1 G 1 1 1 G G A . n B 1 2 G 2 2 2 G G A . n B 1 3 C 3 3 3 C C A . n B 1 4 U 4 4 4 U U A . n B 1 5 C 5 5 5 C C A . n B 1 6 G 6 6 6 G G A . n B 1 7 G 7 7 7 G G A . n B 1 8 C 8 8 8 C C A . n B 1 9 G 9 9 9 G G A . n B 1 10 G 10 10 10 G G A . n B 1 11 C 11 11 11 C C A . n B 1 12 G 12 12 12 G G A . n B 1 13 G 13 13 13 G G A . n B 1 14 A 14 14 14 A A A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K 1 101 1 K K B . D 2 K 1 102 2 K K B . E 2 K 1 101 3 K K A . F 3 V8A 1 102 101 V8A FC4 A . G 3 V8A 1 103 201 V8A FC4 A . H 4 HOH 1 201 57 HOH HOH B . H 4 HOH 2 202 41 HOH HOH B . H 4 HOH 3 203 88 HOH HOH B . H 4 HOH 4 204 53 HOH HOH B . H 4 HOH 5 205 2 HOH HOH B . H 4 HOH 6 206 45 HOH HOH B . H 4 HOH 7 207 4 HOH HOH B . H 4 HOH 8 208 82 HOH HOH B . H 4 HOH 9 209 56 HOH HOH B . H 4 HOH 10 210 92 HOH HOH B . H 4 HOH 11 211 25 HOH HOH B . H 4 HOH 12 212 30 HOH HOH B . H 4 HOH 13 213 84 HOH HOH B . H 4 HOH 14 214 38 HOH HOH B . H 4 HOH 15 215 9 HOH HOH B . H 4 HOH 16 216 11 HOH HOH B . H 4 HOH 17 217 31 HOH HOH B . H 4 HOH 18 218 26 HOH HOH B . H 4 HOH 19 219 75 HOH HOH B . H 4 HOH 20 220 17 HOH HOH B . H 4 HOH 21 221 86 HOH HOH B . H 4 HOH 22 222 18 HOH HOH B . H 4 HOH 23 223 6 HOH HOH B . H 4 HOH 24 224 58 HOH HOH B . H 4 HOH 25 225 12 HOH HOH B . H 4 HOH 26 226 13 HOH HOH B . H 4 HOH 27 227 20 HOH HOH B . H 4 HOH 28 228 77 HOH HOH B . H 4 HOH 29 229 74 HOH HOH B . H 4 HOH 30 230 8 HOH HOH B . H 4 HOH 31 231 22 HOH HOH B . H 4 HOH 32 232 65 HOH HOH B . H 4 HOH 33 233 21 HOH HOH B . H 4 HOH 34 234 54 HOH HOH B . H 4 HOH 35 235 87 HOH HOH B . H 4 HOH 36 236 96 HOH HOH B . H 4 HOH 37 237 50 HOH HOH B . H 4 HOH 38 238 83 HOH HOH B . H 4 HOH 39 239 67 HOH HOH B . H 4 HOH 40 240 94 HOH HOH B . H 4 HOH 41 241 59 HOH HOH B . H 4 HOH 42 242 49 HOH HOH B . H 4 HOH 43 243 60 HOH HOH B . H 4 HOH 44 244 76 HOH HOH B . I 4 HOH 1 201 27 HOH HOH A . I 4 HOH 2 202 16 HOH HOH A . I 4 HOH 3 203 40 HOH HOH A . I 4 HOH 4 204 32 HOH HOH A . I 4 HOH 5 205 85 HOH HOH A . I 4 HOH 6 206 90 HOH HOH A . I 4 HOH 7 207 43 HOH HOH A . I 4 HOH 8 208 62 HOH HOH A . I 4 HOH 9 209 95 HOH HOH A . I 4 HOH 10 210 1 HOH HOH A . I 4 HOH 11 211 55 HOH HOH A . I 4 HOH 12 212 68 HOH HOH A . I 4 HOH 13 213 5 HOH HOH A . I 4 HOH 14 214 91 HOH HOH A . I 4 HOH 15 215 19 HOH HOH A . I 4 HOH 16 216 42 HOH HOH A . I 4 HOH 17 217 63 HOH HOH A . I 4 HOH 18 218 7 HOH HOH A . I 4 HOH 19 219 71 HOH HOH A . I 4 HOH 20 220 33 HOH HOH A . I 4 HOH 21 221 23 HOH HOH A . I 4 HOH 22 222 29 HOH HOH A . I 4 HOH 23 223 14 HOH HOH A . I 4 HOH 24 224 81 HOH HOH A . I 4 HOH 25 225 52 HOH HOH A . I 4 HOH 26 226 37 HOH HOH A . I 4 HOH 27 227 72 HOH HOH A . I 4 HOH 28 228 47 HOH HOH A . I 4 HOH 29 229 3 HOH HOH A . I 4 HOH 30 230 51 HOH HOH A . I 4 HOH 31 231 34 HOH HOH A . I 4 HOH 32 232 36 HOH HOH A . I 4 HOH 33 233 48 HOH HOH A . I 4 HOH 34 234 10 HOH HOH A . I 4 HOH 35 235 61 HOH HOH A . I 4 HOH 36 236 15 HOH HOH A . I 4 HOH 37 237 78 HOH HOH A . I 4 HOH 38 238 35 HOH HOH A . I 4 HOH 39 239 69 HOH HOH A . I 4 HOH 40 240 28 HOH HOH A . I 4 HOH 41 241 73 HOH HOH A . I 4 HOH 42 242 93 HOH HOH A . I 4 HOH 43 243 64 HOH HOH A . I 4 HOH 44 244 39 HOH HOH A . I 4 HOH 45 245 44 HOH HOH A . I 4 HOH 46 246 24 HOH HOH A . I 4 HOH 47 247 79 HOH HOH A . I 4 HOH 48 248 97 HOH HOH A . I 4 HOH 49 249 70 HOH HOH A . I 4 HOH 50 250 46 HOH HOH A . I 4 HOH 51 251 66 HOH HOH A . I 4 HOH 52 252 80 HOH HOH A . I 4 HOH 53 253 89 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2670 ? 1 MORE -23 ? 1 'SSA (A^2)' 5630 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G 1 ? B G 1 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 ? A G 2 ? B G 2 ? 1_555 82.4 ? 2 O6 ? A G 1 ? B G 1 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 ? A G 6 ? B G 6 ? 1_555 76.9 ? 3 O6 ? A G 2 ? B G 2 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 ? A G 6 ? B G 6 ? 1_555 77.0 ? 4 O6 ? A G 1 ? B G 1 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 A A G 7 ? B G 7 ? 1_555 145.2 ? 5 O6 ? A G 2 ? B G 2 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 A A G 7 ? B G 7 ? 1_555 66.7 ? 6 O6 ? A G 6 ? B G 6 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 A A G 7 ? B G 7 ? 1_555 80.7 ? 7 O6 ? A G 1 ? B G 1 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 B A G 7 ? B G 7 ? 1_555 142.8 ? 8 O6 ? A G 2 ? B G 2 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 B A G 7 ? B G 7 ? 1_555 65.9 ? 9 O6 ? A G 6 ? B G 6 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 B A G 7 ? B G 7 ? 1_555 77.5 ? 10 O6 A A G 7 ? B G 7 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 B A G 7 ? B G 7 ? 1_555 3.2 ? 11 O6 ? A G 1 ? B G 1 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 ? B G 1 ? A G 1 ? 1_555 120.7 ? 12 O6 ? A G 2 ? B G 2 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 ? B G 1 ? A G 1 ? 1_555 138.2 ? 13 O6 ? A G 6 ? B G 6 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 ? B G 1 ? A G 1 ? 1_555 75.7 ? 14 O6 A A G 7 ? B G 7 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 ? B G 1 ? A G 1 ? 1_555 78.0 ? 15 O6 B A G 7 ? B G 7 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 ? B G 1 ? A G 1 ? 1_555 77.6 ? 16 O6 ? A G 1 ? B G 1 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 ? B G 2 ? A G 2 ? 1_555 139.1 ? 17 O6 ? A G 2 ? B G 2 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 ? B G 2 ? A G 2 ? 1_555 100.3 ? 18 O6 ? A G 6 ? B G 6 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 ? B G 2 ? A G 2 ? 1_555 143.8 ? 19 O6 A A G 7 ? B G 7 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 ? B G 2 ? A G 2 ? 1_555 65.7 ? 20 O6 B A G 7 ? B G 7 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 ? B G 2 ? A G 2 ? 1_555 68.9 ? 21 O6 ? B G 1 ? A G 1 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 ? B G 2 ? A G 2 ? 1_555 84.2 ? 22 O6 ? A G 1 ? B G 1 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 ? B G 6 ? A G 6 ? 1_555 76.5 ? 23 O6 ? A G 2 ? B G 2 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 ? B G 6 ? A G 6 ? 1_555 145.2 ? 24 O6 ? A G 6 ? B G 6 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 ? B G 6 ? A G 6 ? 1_555 123.3 ? 25 O6 A A G 7 ? B G 7 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 ? B G 6 ? A G 6 ? 1_555 138.3 ? 26 O6 B A G 7 ? B G 7 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 ? B G 6 ? A G 6 ? 1_555 140.6 ? 27 O6 ? B G 1 ? A G 1 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 ? B G 6 ? A G 6 ? 1_555 76.6 ? 28 O6 ? B G 2 ? A G 2 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 ? B G 6 ? A G 6 ? 1_555 79.2 ? 29 O6 ? A G 1 ? B G 1 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 ? B G 7 ? A G 7 ? 1_555 78.7 ? 30 O6 ? A G 2 ? B G 2 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 ? B G 7 ? A G 7 ? 1_555 67.8 ? 31 O6 ? A G 6 ? B G 6 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 ? B G 7 ? A G 7 ? 1_555 139.2 ? 32 O6 A A G 7 ? B G 7 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 ? B G 7 ? A G 7 ? 1_555 102.6 ? 33 O6 B A G 7 ? B G 7 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 ? B G 7 ? A G 7 ? 1_555 104.8 ? 34 O6 ? B G 1 ? A G 1 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 ? B G 7 ? A G 7 ? 1_555 145.0 ? 35 O6 ? B G 2 ? A G 2 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 ? B G 7 ? A G 7 ? 1_555 65.3 ? 36 O6 ? B G 6 ? A G 6 ? 1_555 K ? C K . ? B K 101 ? 1_555 O6 ? B G 7 ? A G 7 ? 1_555 81.1 ? 37 O6 ? A G 2 ? B G 2 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 A A G 7 ? B G 7 ? 1_555 69.0 ? 38 O6 ? A G 2 ? B G 2 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 B A G 7 ? B G 7 ? 1_555 68.1 ? 39 O6 A A G 7 ? B G 7 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 B A G 7 ? B G 7 ? 1_555 3.5 ? 40 O6 ? A G 2 ? B G 2 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? A G 9 ? B G 9 ? 1_555 134.9 ? 41 O6 A A G 7 ? B G 7 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? A G 9 ? B G 9 ? 1_555 80.7 ? 42 O6 B A G 7 ? B G 7 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? A G 9 ? B G 9 ? 1_555 79.6 ? 43 O6 ? A G 2 ? B G 2 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 76.8 ? 44 O6 A A G 7 ? B G 7 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 90.1 ? 45 O6 B A G 7 ? B G 7 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 86.6 ? 46 O6 ? A G 9 ? B G 9 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 70.4 ? 47 O6 ? A G 2 ? B G 2 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? B G 2 ? A G 2 ? 1_555 110.0 ? 48 O6 A A G 7 ? B G 7 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? B G 2 ? A G 2 ? 1_555 68.8 ? 49 O6 B A G 7 ? B G 7 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? B G 2 ? A G 2 ? 1_555 72.1 ? 50 O6 ? A G 9 ? B G 9 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? B G 2 ? A G 2 ? 1_555 87.8 ? 51 O6 ? A G 12 ? B G 12 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? B G 2 ? A G 2 ? 1_555 152.1 ? 52 O6 ? A G 2 ? B G 2 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? B G 7 ? A G 7 ? 1_555 70.6 ? 53 O6 A A G 7 ? B G 7 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? B G 7 ? A G 7 ? 1_555 104.0 ? 54 O6 B A G 7 ? B G 7 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? B G 7 ? A G 7 ? 1_555 106.6 ? 55 O6 ? A G 9 ? B G 9 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? B G 7 ? A G 7 ? 1_555 151.8 ? 56 O6 ? A G 12 ? B G 12 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? B G 7 ? A G 7 ? 1_555 136.4 ? 57 O6 ? B G 2 ? A G 2 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? B G 7 ? A G 7 ? 1_555 68.9 ? 58 O6 ? A G 2 ? B G 2 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? B G 9 ? A G 9 ? 1_555 88.4 ? 59 O6 A A G 7 ? B G 7 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? B G 9 ? A G 9 ? 1_555 153.0 ? 60 O6 B A G 7 ? B G 7 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? B G 9 ? A G 9 ? 1_555 150.3 ? 61 O6 ? A G 9 ? B G 9 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? B G 9 ? A G 9 ? 1_555 107.8 ? 62 O6 ? A G 12 ? B G 12 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? B G 9 ? A G 9 ? 1_555 69.9 ? 63 O6 ? B G 2 ? A G 2 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? B G 9 ? A G 9 ? 1_555 135.5 ? 64 O6 ? B G 7 ? A G 7 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? B G 9 ? A G 9 ? 1_555 80.8 ? 65 O6 ? A G 2 ? B G 2 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? B G 12 ? A G 12 ? 1_555 152.8 ? 66 O6 A A G 7 ? B G 7 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? B G 12 ? A G 12 ? 1_555 136.5 ? 67 O6 B A G 7 ? B G 7 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? B G 12 ? A G 12 ? 1_555 138.0 ? 68 O6 ? A G 9 ? B G 9 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? B G 12 ? A G 12 ? 1_555 69.1 ? 69 O6 ? A G 12 ? B G 12 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? B G 12 ? A G 12 ? 1_555 107.5 ? 70 O6 ? B G 2 ? A G 2 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? B G 12 ? A G 12 ? 1_555 79.2 ? 71 O6 ? B G 7 ? A G 7 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? B G 12 ? A G 12 ? 1_555 90.3 ? 72 O6 ? B G 9 ? A G 9 ? 1_555 K ? D K . ? B K 102 ? 1_555 O6 ? B G 12 ? A G 12 ? 1_555 69.0 ? 73 O6 ? A G 9 ? B G 9 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? A G 10 ? B G 10 ? 1_555 75.4 ? 74 O6 ? A G 9 ? B G 9 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 68.0 ? 75 O6 ? A G 10 ? B G 10 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? A G 12 ? B G 12 ? 1_555 88.8 ? 76 O6 ? A G 9 ? B G 9 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? A G 13 ? B G 13 ? 1_555 130.0 ? 77 O6 ? A G 10 ? B G 10 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? A G 13 ? B G 13 ? 1_555 74.9 ? 78 O6 ? A G 12 ? B G 12 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? A G 13 ? B G 13 ? 1_555 72.1 ? 79 O6 ? A G 9 ? B G 9 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B G 9 ? A G 9 ? 1_555 100.9 ? 80 O6 ? A G 10 ? B G 10 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B G 9 ? A G 9 ? 1_555 153.2 ? 81 O6 ? A G 12 ? B G 12 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B G 9 ? A G 9 ? 1_555 65.7 ? 82 O6 ? A G 13 ? B G 13 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B G 9 ? A G 9 ? 1_555 88.6 ? 83 O6 ? A G 9 ? B G 9 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B G 10 ? A G 10 ? 1_555 152.8 ? 84 O6 ? A G 10 ? B G 10 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B G 10 ? A G 10 ? 1_555 122.3 ? 85 O6 ? A G 12 ? B G 12 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B G 10 ? A G 10 ? 1_555 127.6 ? 86 O6 ? A G 13 ? B G 13 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B G 10 ? A G 10 ? 1_555 76.9 ? 87 O6 ? B G 9 ? A G 9 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B G 10 ? A G 10 ? 1_555 72.4 ? 88 O6 ? A G 9 ? B G 9 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B G 12 ? A G 12 ? 1_555 67.1 ? 89 O6 ? A G 10 ? B G 10 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B G 12 ? A G 12 ? 1_555 132.7 ? 90 O6 ? A G 12 ? B G 12 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B G 12 ? A G 12 ? 1_555 102.3 ? 91 O6 ? A G 13 ? B G 13 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B G 12 ? A G 12 ? 1_555 152.4 ? 92 O6 ? B G 9 ? A G 9 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B G 12 ? A G 12 ? 1_555 65.1 ? 93 O6 ? B G 10 ? A G 10 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B G 12 ? A G 12 ? 1_555 86.6 ? 94 O6 ? A G 9 ? B G 9 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B G 13 ? A G 13 ? 1_555 89.3 ? 95 O6 ? A G 10 ? B G 10 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B G 13 ? A G 13 ? 1_555 75.9 ? 96 O6 ? A G 12 ? B G 12 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B G 13 ? A G 13 ? 1_555 155.5 ? 97 O6 ? A G 13 ? B G 13 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B G 13 ? A G 13 ? 1_555 120.6 ? 98 O6 ? B G 9 ? A G 9 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B G 13 ? A G 13 ? 1_555 130.9 ? 99 O6 ? B G 10 ? A G 10 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B G 13 ? A G 13 ? 1_555 76.9 ? 100 O6 ? B G 12 ? A G 12 ? 1_555 K ? E K . ? A K 101 ? 1_555 O6 ? B G 13 ? A G 13 ? 1_555 75.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-07-28 2 'Structure model' 1 1 2023-10-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' atom_type 2 2 'Structure model' chem_comp_atom 3 2 'Structure model' chem_comp_bond 4 2 'Structure model' database_2 5 2 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_atom_type.pdbx_N_electrons' 2 2 'Structure model' '_atom_type.pdbx_scat_Z' 3 2 'Structure model' '_database_2.pdbx_DOI' 4 2 'Structure model' '_database_2.pdbx_database_accession' # _symmetry_equiv.pos_as_xyz -x,y+1/2,-z _symmetry_equiv.id 1 # _diffrn_reflns.limit_h_max 20 _diffrn_reflns.limit_h_min -21 _diffrn_reflns.limit_k_max 28 _diffrn_reflns.limit_k_min -29 _diffrn_reflns.limit_l_max 23 _diffrn_reflns.limit_l_min -21 _diffrn_reflns.number 47094 _diffrn_reflns.theta_max 23.6140252043 _diffrn_reflns.theta_min 0.934183571367 _diffrn_reflns.diffrn_id 1 # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0258 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.7.4 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 5 # _pdbx_entry_details.entry_id 6XRQ _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P B C 5 ? ? OP2 B C 5 ? ? 1.371 1.485 -0.114 0.017 N 2 1 "O3'" A G 13 ? ? P A A 14 ? ? 1.515 1.607 -0.092 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B G 9 ? ? "C1'" B G 9 ? ? "C2'" B G 9 ? ? 99.23 105.80 -6.57 1.00 N 2 1 "O5'" A U 4 ? ? P A U 4 ? ? OP1 A U 4 ? ? 99.42 105.70 -6.28 0.90 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 C B 5 ? ? 0.100 'SIDE CHAIN' 2 1 G A 2 ? ? 0.055 'SIDE CHAIN' 3 1 C A 5 ? ? 0.067 'SIDE CHAIN' 4 1 G A 12 ? ? 0.049 'SIDE CHAIN' # _cell_measurement.reflns_used 47094 _cell_measurement.theta_max 23.6140252043 _cell_measurement.theta_min 0.934183571367 _cell_measurement.entry_id 6XRQ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 K K K N N 114 U OP3 O N N 115 U P P N N 116 U OP1 O N N 117 U OP2 O N N 118 U "O5'" O N N 119 U "C5'" C N N 120 U "C4'" C N R 121 U "O4'" O N N 122 U "C3'" C N S 123 U "O3'" O N N 124 U "C2'" C N R 125 U "O2'" O N N 126 U "C1'" C N R 127 U N1 N N N 128 U C2 C N N 129 U O2 O N N 130 U N3 N N N 131 U C4 C N N 132 U O4 O N N 133 U C5 C N N 134 U C6 C N N 135 U HOP3 H N N 136 U HOP2 H N N 137 U "H5'" H N N 138 U "H5''" H N N 139 U "H4'" H N N 140 U "H3'" H N N 141 U "HO3'" H N N 142 U "H2'" H N N 143 U "HO2'" H N N 144 U "H1'" H N N 145 U H3 H N N 146 U H5 H N N 147 U H6 H N N 148 V8A C18 C N N 149 V8A C15 C N N 150 V8A C13 C N N 151 V8A C12 C N N 152 V8A C14 C N N 153 V8A C11 C N N 154 V8A O4 O N N 155 V8A N3 N N N 156 V8A C10 C Y N 157 V8A C9 C Y N 158 V8A C8 C Y N 159 V8A C7 C Y N 160 V8A N2 N N N 161 V8A C6 C Y N 162 V8A C5 C Y N 163 V8A C4 C Y N 164 V8A O3 O N N 165 V8A C3 C Y N 166 V8A C2 C Y N 167 V8A C1 C Y N 168 V8A O2 O N N 169 V8A O1 O N N 170 V8A N1 N N N 171 V8A O34 O N N 172 V8A O85 O N N 173 V8A C25 C N N 174 V8A C26 C N N 175 V8A C27 C N N 176 V8A C32 C N N 177 V8A C33 C N N 178 V8A C35 C N N 179 V8A C36 C N N 180 V8A C56 C N N 181 V8A C57 C N N 182 V8A C59 C N N 183 V8A C60 C N N 184 V8A C62 C N N 185 V8A C63 C N N 186 V8A C80 C N N 187 V8A C81 C N N 188 V8A C83 C N N 189 V8A C84 C N N 190 V8A C86 C N N 191 V8A C87 C N N 192 V8A N31 N N N 193 V8A N58 N N N 194 V8A N6 N N N 195 V8A N82 N N N 196 V8A O61 O N N 197 V8A C118 C N N 198 V8A C120 C N N 199 V8A C121 C N N 200 V8A C140 C N N 201 V8A C141 C N N 202 V8A C143 C N N 203 V8A C144 C N N 204 V8A N139 N N N 205 V8A O142 O N N 206 V8A H1 H N N 207 V8A H2 H N N 208 V8A H3 H N N 209 V8A H4 H N N 210 V8A H5 H N N 211 V8A H6 H N N 212 V8A H7 H N N 213 V8A H8 H N N 214 V8A H9 H N N 215 V8A H10 H N N 216 V8A H11 H N N 217 V8A H12 H N N 218 V8A H13 H N N 219 V8A H14 H N N 220 V8A H15 H N N 221 V8A H16 H N N 222 V8A H17 H N N 223 V8A H18 H N N 224 V8A H19 H N N 225 V8A H20 H N N 226 V8A H21 H N N 227 V8A H22 H N N 228 V8A H23 H N N 229 V8A H24 H N N 230 V8A H25 H N N 231 V8A H26 H N N 232 V8A H27 H N N 233 V8A H28 H N N 234 V8A H29 H N N 235 V8A H30 H N N 236 V8A H31 H N N 237 V8A H32 H N N 238 V8A H33 H N N 239 V8A H34 H N N 240 V8A H35 H N N 241 V8A H36 H N N 242 V8A H37 H N N 243 V8A H38 H N N 244 V8A H39 H N N 245 V8A H40 H N N 246 V8A H41 H N N 247 V8A H42 H N N 248 V8A H43 H N N 249 V8A H44 H N N 250 V8A H45 H N N 251 V8A H48 H N N 252 V8A H50 H N N 253 V8A H51 H N N 254 V8A H52 H N N 255 V8A H53 H N N 256 V8A H54 H N N 257 V8A H55 H N N 258 V8A H56 H N N 259 V8A H57 H N N 260 V8A H58 H N N 261 V8A H59 H N N 262 V8A H60 H N N 263 V8A H61 H N N 264 V8A H62 H N N 265 V8A H63 H N N 266 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 V8A C84 C83 sing N N 153 V8A C84 O85 sing N N 154 V8A C83 N82 sing N N 155 V8A N82 C81 sing N N 156 V8A N82 C87 sing N N 157 V8A O85 C86 sing N N 158 V8A C81 C80 sing N N 159 V8A C80 C15 sing N N 160 V8A C86 C87 sing N N 161 V8A C15 N1 sing N N 162 V8A O3 C12 doub N N 163 V8A C12 N1 sing N N 164 V8A C12 C6 sing N N 165 V8A N1 C11 sing N N 166 V8A C25 C26 sing N N 167 V8A C25 N6 sing N N 168 V8A C1 C6 doub Y N 169 V8A C1 C2 sing Y N 170 V8A C6 C5 sing Y N 171 V8A O2 C11 doub N N 172 V8A C11 C10 sing N N 173 V8A C26 C27 sing N N 174 V8A C32 C33 sing N N 175 V8A C32 N31 sing N N 176 V8A C33 O34 sing N N 177 V8A C27 N31 sing N N 178 V8A N6 C2 sing N N 179 V8A O142 C143 sing N N 180 V8A O142 C141 sing N N 181 V8A C2 C3 doub Y N 182 V8A C143 C144 sing N N 183 V8A C5 C10 doub Y N 184 V8A C5 C4 sing Y N 185 V8A C10 C9 sing Y N 186 V8A N31 C36 sing N N 187 V8A C144 N139 sing N N 188 V8A O34 C35 sing N N 189 V8A C141 C140 sing N N 190 V8A C3 C4 sing Y N 191 V8A C3 C13 sing N N 192 V8A C4 C7 doub Y N 193 V8A C36 C35 sing N N 194 V8A C9 N3 sing N N 195 V8A C9 C8 doub Y N 196 V8A N3 C118 sing N N 197 V8A C140 N139 sing N N 198 V8A N139 C121 sing N N 199 V8A C121 C120 sing N N 200 V8A O4 C13 doub N N 201 V8A C13 N2 sing N N 202 V8A C120 C118 sing N N 203 V8A C7 C8 sing Y N 204 V8A C7 C14 sing N N 205 V8A N2 C14 sing N N 206 V8A N2 C18 sing N N 207 V8A C14 O1 doub N N 208 V8A C18 C56 sing N N 209 V8A C56 C57 sing N N 210 V8A C57 N58 sing N N 211 V8A N58 C59 sing N N 212 V8A N58 C63 sing N N 213 V8A C59 C60 sing N N 214 V8A C63 C62 sing N N 215 V8A C62 O61 sing N N 216 V8A C60 O61 sing N N 217 V8A C18 H1 sing N N 218 V8A C18 H2 sing N N 219 V8A C15 H3 sing N N 220 V8A C15 H4 sing N N 221 V8A N3 H5 sing N N 222 V8A C8 H6 sing N N 223 V8A C1 H7 sing N N 224 V8A C25 H8 sing N N 225 V8A C25 H9 sing N N 226 V8A C26 H10 sing N N 227 V8A C26 H11 sing N N 228 V8A C27 H12 sing N N 229 V8A C27 H13 sing N N 230 V8A C32 H14 sing N N 231 V8A C32 H15 sing N N 232 V8A C33 H16 sing N N 233 V8A C33 H17 sing N N 234 V8A C35 H18 sing N N 235 V8A C35 H19 sing N N 236 V8A C36 H20 sing N N 237 V8A C36 H21 sing N N 238 V8A C56 H22 sing N N 239 V8A C56 H23 sing N N 240 V8A C57 H24 sing N N 241 V8A C57 H25 sing N N 242 V8A C59 H26 sing N N 243 V8A C59 H27 sing N N 244 V8A C60 H28 sing N N 245 V8A C60 H29 sing N N 246 V8A C62 H30 sing N N 247 V8A C62 H31 sing N N 248 V8A C63 H32 sing N N 249 V8A C63 H33 sing N N 250 V8A C80 H34 sing N N 251 V8A C80 H35 sing N N 252 V8A C81 H36 sing N N 253 V8A C81 H37 sing N N 254 V8A C83 H38 sing N N 255 V8A C83 H39 sing N N 256 V8A C84 H40 sing N N 257 V8A C84 H41 sing N N 258 V8A C86 H42 sing N N 259 V8A C86 H43 sing N N 260 V8A C87 H44 sing N N 261 V8A C87 H45 sing N N 262 V8A N6 H48 sing N N 263 V8A C118 H50 sing N N 264 V8A C118 H51 sing N N 265 V8A C120 H52 sing N N 266 V8A C120 H53 sing N N 267 V8A C121 H54 sing N N 268 V8A C121 H55 sing N N 269 V8A C140 H56 sing N N 270 V8A C140 H57 sing N N 271 V8A C141 H58 sing N N 272 V8A C141 H59 sing N N 273 V8A C143 H60 sing N N 274 V8A C143 H61 sing N N 275 V8A C144 H62 sing N N 276 V8A C144 H63 sing N N 277 # _ndb_struct_conf_na.entry_id 6XRQ _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 7 1_555 B G 2 1_555 -1.403 -3.540 0.287 0.425 -0.189 90.677 1 A_G7:G2_A A 7 ? A 2 ? 6 3 1 B G 6 1_555 B G 1 1_555 -1.695 -3.405 -0.024 -1.895 3.765 89.769 2 A_G6:G1_A A 6 ? A 1 ? 6 3 1 A C 5 1_555 B C 5 1_555 -2.021 -1.295 -0.135 -17.511 -2.332 -179.037 3 B_C5:C5_A B 5 ? A 5 ? 15 2 1 B G 13 1_555 B G 10 1_555 -1.706 -3.460 -0.006 -1.111 2.923 89.994 4 A_G13:G10_A A 13 ? A 10 ? 6 3 1 B G 9 1_555 B G 12 1_555 1.483 3.449 -0.276 2.450 -1.587 -91.380 5 A_G9:G12_A A 9 ? A 12 ? 6 3 1 A G 12 1_555 A G 9 1_555 -1.561 -3.461 0.115 -2.347 3.077 90.733 6 B_G12:G9_B B 12 ? B 9 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 7 1_555 B G 2 1_555 B G 6 1_555 B G 1 1_555 0.558 1.497 3.227 -3.055 0.043 -44.438 -1.979 0.457 3.256 -0.057 -4.033 -44.538 1 AA_G7G6:G1G2_AA A 7 ? A 2 ? A 6 ? A 1 ? 1 B G 6 1_555 B G 1 1_555 A C 5 1_555 B C 5 1_555 1.092 -0.040 6.528 -0.196 -1.980 -28.824 0.958 2.101 6.518 3.972 -0.392 -28.891 2 AB_G6C5:C5G1_AA A 6 ? A 1 ? B 5 ? A 5 ? 1 B G 13 1_555 B G 10 1_555 B G 9 1_555 B G 12 1_555 0.450 0.948 -3.188 -1.095 -5.694 -31.632 -2.677 0.998 -2.960 10.337 -1.988 -32.145 3 AA_G13G9:G12G10_AA A 13 ? A 10 ? A 9 ? A 12 ? 1 B G 9 1_555 B G 12 1_555 A G 12 1_555 A G 9 1_555 1.573 3.450 0.013 -3.085 0.918 -179.580 -1.725 0.786 0.013 -0.459 -1.543 -179.580 4 AB_G9G12:G9G12_BA A 9 ? A 12 ? B 12 ? B 9 ? # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id V8A _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id V8A _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 '2,7-bis[3-(morpholin-4-yl)propyl]-4,9-bis{[3-(morpholin-4-yl)propyl]amino}benzo[lmn][3,8]phenanthroline-1,3,6,8(2H,7H)-tetrone' V8A 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6JJH _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? # _publ.section_references ;Evans, P. (2006) Acta Cryst. D62, 72-82. Evans, P. R. and Murshudov, G. N. (2013) Acta Cryst. D69, 1204-1214. Winn, M. D. et al. (2011) Acta Cryst. D67, 235-242. Winter, G. (2010) J. Appl. Cryst. 43, 186-190. Winter, G. et al. (2018) Acta Cryst. D74, 85-97. ; _publ.entry_id 6XRQ # _space_group.crystal_system monoclinic _space_group.IT_number 4 _space_group.id 1 #