data_6XRZ # _entry.id 6XRZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6XRZ pdb_00006xrz 10.2210/pdb6xrz/pdb WWPDB D_1000250650 ? ? EMDB EMD-22296 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-08-19 2 'Structure model' 1 1 2024-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' citation 4 2 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_id_ISSN' 2 2 'Structure model' '_database_2.pdbx_DOI' 3 2 'Structure model' '_database_2.pdbx_database_accession' # _database_PDB_caveat.id 1 _database_PDB_caveat.text 'Residues C A 28 and A A 29 that are next to each other in the sample sequence are not properly linked.' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6XRZ _pdbx_database_status.recvd_initial_deposition_date 2020-07-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB . EMD-22296 'associated EM volume' EMDB . EMD-22297 'other EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Zhang, K.' 1 ? 'Zheludev, I.' 2 ? 'Hagey, R.' 3 ? 'Wu, M.' 4 ? 'Haslecker, R.' 5 ? 'Hou, Y.' 6 ? 'Kretsch, R.' 7 ? 'Pintilie, G.' 8 ? 'Rangan, R.' 9 ? 'Kladwang, W.' 10 ? 'Li, S.' 11 ? 'Pham, E.' 12 ? 'Souibgui, C.' 13 ? 'Baric, R.' 14 ? 'Sheahan, T.' 15 ? 'Souza, V.' 16 ? 'Glenn, J.' 17 ? 'Chiu, W.' 18 ? 'Das, R.' 19 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biorxiv _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2692-8205 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Cryo-electron Microscopy and Exploratory Antisense Targeting of the 28-kDa Frameshift Stimulation Element from the SARS-CoV-2 RNA Genome. ; _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1101/2020.07.18.209270 _citation.pdbx_database_id_PubMed 32743589 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, K.' 1 0000-0003-0414-4776 primary 'Zheludev, I.N.' 2 0000-0002-9572-0574 primary 'Hagey, R.J.' 3 0000-0002-4368-3169 primary 'Wu, M.T.' 4 0000-0003-4972-6809 primary 'Haslecker, R.' 5 ? primary 'Hou, Y.J.' 6 0000-0002-8323-7243 primary 'Kretsch, R.' 7 0000-0002-6935-518X primary 'Pintilie, G.D.' 8 0000-0002-0848-5335 primary 'Rangan, R.' 9 0000-0002-0960-0825 primary 'Kladwang, W.' 10 ? primary 'Li, S.' 11 0000-0002-7041-5960 primary 'Pham, E.A.' 12 0000-0002-7433-3532 primary 'Bernardin-Souibgui, C.' 13 ? primary 'Baric, R.S.' 14 0000-0001-6827-8701 primary 'Sheahan, T.P.' 15 0000-0001-9181-2183 primary 'D Souza, V.' 16 ? primary 'Glenn, J.S.' 17 ? primary 'Chiu, W.' 18 0000-0002-8910-3078 primary 'Das, R.' 19 0000-0001-7497-0972 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Frameshift Stimulation Element from the SARS-CoV-2 RNA Genome' _entity.formula_weight 28285.660 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'GB residues 13434-13521' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GUUUUUAAACGGGUUUGCGGUGUAAGUGCAGCCCGUCUUACACCGUGCGGCACAGGCACUAGUACUGAUGUCGUAUACAG GGCUUUUG ; _entity_poly.pdbx_seq_one_letter_code_can ;GUUUUUAAACGGGUUUGCGGUGUAAGUGCAGCCCGUCUUACACCGUGCGGCACAGGCACUAGUACUGAUGUCGUAUACAG GGCUUUUG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 U n 1 3 U n 1 4 U n 1 5 U n 1 6 U n 1 7 A n 1 8 A n 1 9 A n 1 10 C n 1 11 G n 1 12 G n 1 13 G n 1 14 U n 1 15 U n 1 16 U n 1 17 G n 1 18 C n 1 19 G n 1 20 G n 1 21 U n 1 22 G n 1 23 U n 1 24 A n 1 25 A n 1 26 G n 1 27 U n 1 28 G n 1 29 C n 1 30 A n 1 31 G n 1 32 C n 1 33 C n 1 34 C n 1 35 G n 1 36 U n 1 37 C n 1 38 U n 1 39 U n 1 40 A n 1 41 C n 1 42 A n 1 43 C n 1 44 C n 1 45 G n 1 46 U n 1 47 G n 1 48 C n 1 49 G n 1 50 G n 1 51 C n 1 52 A n 1 53 C n 1 54 A n 1 55 G n 1 56 G n 1 57 C n 1 58 A n 1 59 C n 1 60 U n 1 61 A n 1 62 G n 1 63 U n 1 64 A n 1 65 C n 1 66 U n 1 67 G n 1 68 A n 1 69 U n 1 70 G n 1 71 U n 1 72 C n 1 73 G n 1 74 U n 1 75 A n 1 76 U n 1 77 A n 1 78 C n 1 79 A n 1 80 G n 1 81 G n 1 82 G n 1 83 C n 1 84 U n 1 85 U n 1 86 U n 1 87 U n 1 88 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 88 _pdbx_entity_src_syn.organism_scientific 'Severe acute respiratory syndrome coronavirus 2' _pdbx_entity_src_syn.organism_common_name SARS-CoV-2 _pdbx_entity_src_syn.ncbi_taxonomy_id 2697049 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 0 0 G G A . n A 1 2 U 2 1 1 U U A . n A 1 3 U 3 2 2 U U A . n A 1 4 U 4 3 3 U U A . n A 1 5 U 5 4 4 U U A . n A 1 6 U 6 5 5 U U A . n A 1 7 A 7 6 6 A A A . n A 1 8 A 8 7 7 A A A . n A 1 9 A 9 8 8 A A A . n A 1 10 C 10 9 9 C C A . n A 1 11 G 11 10 10 G G A . n A 1 12 G 12 11 11 G G A . n A 1 13 G 13 12 12 G G A . n A 1 14 U 14 13 13 U U A . n A 1 15 U 15 14 14 U U A . n A 1 16 U 16 15 15 U U A . n A 1 17 G 17 16 16 G G A . n A 1 18 C 18 17 17 C C A . n A 1 19 G 19 18 18 G G A . n A 1 20 G 20 19 19 G G A . n A 1 21 U 21 20 20 U U A . n A 1 22 G 22 21 21 G G A . n A 1 23 U 23 22 22 U U A . n A 1 24 A 24 23 23 A A A . n A 1 25 A 25 24 24 A A A . n A 1 26 G 26 25 25 G G A . n A 1 27 U 27 26 26 U U A . n A 1 28 G 28 27 27 G G A . n A 1 29 C 29 28 28 C C A . n A 1 30 A 30 29 29 A A A . n A 1 31 G 31 30 30 G G A . n A 1 32 C 32 31 31 C C A . n A 1 33 C 33 32 32 C C A . n A 1 34 C 34 33 33 C C A . n A 1 35 G 35 34 34 G G A . n A 1 36 U 36 35 35 U U A . n A 1 37 C 37 36 36 C C A . n A 1 38 U 38 37 37 U U A . n A 1 39 U 39 38 38 U U A . n A 1 40 A 40 39 39 A A A . n A 1 41 C 41 40 40 C C A . n A 1 42 A 42 41 41 A A A . n A 1 43 C 43 42 42 C C A . n A 1 44 C 44 43 43 C C A . n A 1 45 G 45 44 44 G G A . n A 1 46 U 46 45 45 U U A . n A 1 47 G 47 46 46 G G A . n A 1 48 C 48 47 47 C C A . n A 1 49 G 49 48 48 G G A . n A 1 50 G 50 49 49 G G A . n A 1 51 C 51 50 50 C C A . n A 1 52 A 52 51 51 A A A . n A 1 53 C 53 52 52 C C A . n A 1 54 A 54 53 53 A A A . n A 1 55 G 55 54 54 G G A . n A 1 56 G 56 55 55 G G A . n A 1 57 C 57 56 56 C C A . n A 1 58 A 58 57 57 A A A . n A 1 59 C 59 58 58 C C A . n A 1 60 U 60 59 59 U U A . n A 1 61 A 61 60 60 A A A . n A 1 62 G 62 61 61 G G A . n A 1 63 U 63 62 62 U U A . n A 1 64 A 64 63 63 A A A . n A 1 65 C 65 64 64 C C A . n A 1 66 U 66 65 65 U U A . n A 1 67 G 67 66 66 G G A . n A 1 68 A 68 67 67 A A A . n A 1 69 U 69 68 68 U U A . n A 1 70 G 70 69 69 G G A . n A 1 71 U 71 70 70 U U A . n A 1 72 C 72 71 71 C C A . n A 1 73 G 73 72 72 G G A . n A 1 74 U 74 73 73 U U A . n A 1 75 A 75 74 74 A A A . n A 1 76 U 76 75 75 U U A . n A 1 77 A 77 76 76 A A A . n A 1 78 C 78 77 77 C C A . n A 1 79 A 79 78 78 A A A . n A 1 80 G 80 79 79 G G A . n A 1 81 G 81 80 80 G G A . n A 1 82 G 82 81 81 G G A . n A 1 83 C 83 82 82 C C A . n A 1 84 U 84 83 83 U U A . n A 1 85 U 85 84 84 U U A . n A 1 86 U 86 85 85 U U A . n A 1 87 U 87 86 86 U U A . n A 1 88 G 88 87 87 G G A . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A G 0 ? "O5'" ? A G 1 "O5'" 2 2 Y 1 A G 0 ? "O5'" ? A G 1 "O5'" 3 3 Y 1 A G 0 ? "O5'" ? A G 1 "O5'" 4 4 Y 1 A G 0 ? "O5'" ? A G 1 "O5'" 5 5 Y 1 A G 0 ? "O5'" ? A G 1 "O5'" 6 6 Y 1 A G 0 ? "O5'" ? A G 1 "O5'" 7 7 Y 1 A G 0 ? "O5'" ? A G 1 "O5'" 8 8 Y 1 A G 0 ? "O5'" ? A G 1 "O5'" 9 9 Y 1 A G 0 ? "O5'" ? A G 1 "O5'" 10 10 Y 1 A G 0 ? "O5'" ? A G 1 "O5'" # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6XRZ _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 6XRZ _struct.title 'The 28-kDa Frameshift Stimulation Element from the SARS-CoV-2 RNA Genome' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6XRZ _struct_keywords.text 'Frameshift Stimulation Element, SARS-CoV-2, COVID-19, RNA' _struct_keywords.pdbx_keywords RNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code MT655131.1 _struct_ref.pdbx_db_accession 1860584649 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GUUUUUAAACGGGUUUGCGGUGUAAGUGCAGCCCGUCUUACACCGUGCGGCACAGGCACUAGUACUGAUGUCGUAUACAG GGCUUUUG ; _struct_ref.pdbx_align_begin 13434 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6XRZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 88 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1860584649 _struct_ref_seq.db_align_beg 13434 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 13521 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 0 _struct_ref_seq.pdbx_auth_seq_align_end 87 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 15320 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A U 15 O4 ? ? A G 0 A U 14 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A U 16 O2 ? ? A G 0 A U 15 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog3 hydrog ? ? A U 2 N3 ? ? ? 1_555 A G 13 O6 ? ? A U 1 A G 12 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog4 hydrog ? ? A U 3 N3 ? ? ? 1_555 A G 12 O6 ? ? A U 2 A G 11 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A U 3 O2 ? ? ? 1_555 A G 12 N1 ? ? A U 2 A G 11 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A U 4 N3 ? ? ? 1_555 A G 11 O6 ? ? A U 3 A G 10 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog7 hydrog ? ? A U 4 O2 ? ? ? 1_555 A G 11 N1 ? ? A U 3 A G 10 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog8 hydrog ? ? A U 5 O2 ? ? ? 1_555 A C 10 N4 ? ? A U 4 A C 9 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog9 hydrog ? ? A G 17 N1 ? ? ? 1_555 A U 46 O4 ? ? A G 16 A U 45 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog10 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 45 N1 ? ? A C 17 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 45 O6 ? ? A C 17 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 45 N2 ? ? A C 17 A G 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 44 N3 ? ? A G 18 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 19 N2 ? ? ? 1_555 A C 44 O2 ? ? A G 18 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 19 O6 ? ? ? 1_555 A C 44 N4 ? ? A G 18 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 20 N1 ? ? ? 1_555 A C 43 N3 ? ? A G 19 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 20 N2 ? ? ? 1_555 A C 43 O2 ? ? A G 19 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 20 O6 ? ? ? 1_555 A C 43 N4 ? ? A G 19 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A U 21 N3 ? ? ? 1_555 A A 42 N1 ? ? A U 20 A A 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 21 O4 ? ? ? 1_555 A A 42 N6 ? ? A U 20 A A 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 21 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 21 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 21 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 23 N3 ? ? ? 1_555 A A 40 N1 ? ? A U 22 A A 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 23 O4 ? ? ? 1_555 A A 40 N6 ? ? A U 22 A A 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A A 24 N1 ? ? ? 1_555 A U 39 N3 ? ? A A 23 A U 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A A 24 N6 ? ? ? 1_555 A U 39 O4 ? ? A A 23 A U 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A A 25 N1 ? ? ? 1_555 A U 38 N3 ? ? A A 24 A U 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A A 25 N6 ? ? ? 1_555 A U 38 O4 ? ? A A 24 A U 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 26 N1 ? ? ? 1_555 A C 37 N3 ? ? A G 25 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 37 O2 ? ? A G 25 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 26 O6 ? ? ? 1_555 A C 37 N4 ? ? A G 25 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 28 N1 ? ? ? 1_555 A U 36 O2 ? ? A G 27 A U 35 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog34 hydrog ? ? A G 28 O6 ? ? ? 1_555 A U 36 N3 ? ? A G 27 A U 35 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog35 hydrog ? ? A C 29 N3 ? ? ? 1_555 A G 35 N1 ? ? A C 28 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 29 N4 ? ? ? 1_555 A G 35 O6 ? ? A C 28 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 29 O2 ? ? ? 1_555 A G 35 N2 ? ? A C 28 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A A 30 N1 ? ? ? 1_555 A U 84 N3 ? ? A A 29 A U 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A A 30 N6 ? ? ? 1_555 A U 84 O4 ? ? A A 29 A U 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 31 N1 ? ? ? 1_555 A C 83 N3 ? ? A G 30 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 31 N2 ? ? ? 1_555 A C 83 O2 ? ? A G 30 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 31 O6 ? ? ? 1_555 A C 83 N4 ? ? A G 30 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 32 N3 ? ? ? 1_555 A G 82 N1 ? ? A C 31 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 32 N4 ? ? ? 1_555 A G 82 O6 ? ? A C 31 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 32 O2 ? ? ? 1_555 A G 82 N2 ? ? A C 31 A G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 33 N3 ? ? ? 1_555 A G 81 N1 ? ? A C 32 A G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 33 N4 ? ? ? 1_555 A G 81 O6 ? ? A C 32 A G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 33 O2 ? ? ? 1_555 A G 81 N2 ? ? A C 32 A G 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 34 N3 ? ? ? 1_555 A G 80 N1 ? ? A C 33 A G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 34 N4 ? ? ? 1_555 A G 80 O6 ? ? A C 33 A G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 34 O2 ? ? ? 1_555 A G 80 N2 ? ? A C 33 A G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 47 N1 ? ? ? 1_555 A U 74 O2 ? ? A G 46 A U 73 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog53 hydrog ? ? A G 47 O6 ? ? ? 1_555 A U 74 N3 ? ? A G 46 A U 73 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog54 hydrog ? ? A C 48 N3 ? ? ? 1_555 A G 73 N1 ? ? A C 47 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 48 N4 ? ? ? 1_555 A G 73 O6 ? ? A C 47 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 48 O2 ? ? ? 1_555 A G 73 N2 ? ? A C 47 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 49 N1 ? ? ? 1_555 A C 72 N3 ? ? A G 48 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 49 N2 ? ? ? 1_555 A C 72 O2 ? ? A G 48 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 49 O6 ? ? ? 1_555 A C 72 N4 ? ? A G 48 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 50 N1 ? ? ? 1_555 A U 71 O2 ? ? A G 49 A U 70 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog61 hydrog ? ? A G 50 O6 ? ? ? 1_555 A U 71 N3 ? ? A G 49 A U 70 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog62 hydrog ? ? A C 51 N3 ? ? ? 1_555 A G 70 N1 ? ? A C 50 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 51 N4 ? ? ? 1_555 A G 70 O6 ? ? A C 50 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 51 O2 ? ? ? 1_555 A G 70 N2 ? ? A C 50 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A A 52 N1 ? ? ? 1_555 A U 69 N3 ? ? A A 51 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A A 52 N6 ? ? ? 1_555 A U 69 O4 ? ? A A 51 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 53 N3 ? ? ? 1_555 A G 67 N1 ? ? A C 52 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A C 53 N4 ? ? ? 1_555 A G 67 O6 ? ? A C 52 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 53 O2 ? ? ? 1_555 A G 67 N2 ? ? A C 52 A G 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 53 O2 ? ? ? 1_555 A A 68 N6 ? ? A C 52 A A 67 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog71 hydrog ? ? A A 54 N1 ? ? ? 1_555 A U 66 N3 ? ? A A 53 A U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A A 54 N6 ? ? ? 1_555 A U 66 O4 ? ? A A 53 A U 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A G 55 N1 ? ? ? 1_555 A C 65 N3 ? ? A G 54 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A G 55 N2 ? ? ? 1_555 A C 65 O2 ? ? A G 54 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A G 55 O6 ? ? ? 1_555 A C 65 N4 ? ? A G 54 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 56 N1 ? ? ? 1_555 A A 64 N1 ? ? A G 55 A A 63 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog77 hydrog ? ? A G 56 O6 ? ? ? 1_555 A A 64 N6 ? ? A G 55 A A 63 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog78 hydrog ? ? A C 57 N4 ? ? ? 1_555 A A 64 N1 ? ? A C 56 A A 63 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog79 hydrog ? ? A A 58 N1 ? ? ? 1_555 A U 63 N3 ? ? A A 57 A U 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A A 58 N6 ? ? ? 1_555 A U 63 O4 ? ? A A 57 A U 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 3 "O2'" A G 44 ? ? OP2 A G 46 ? ? 2.17 2 7 "C3'" A U 45 ? ? OP2 A G 46 ? ? 1.30 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O3'" A U 45 ? ? P A G 46 ? ? OP2 A G 46 ? ? 123.22 110.50 12.72 1.10 Y 2 1 "O3'" A U 45 ? ? P A G 46 ? ? OP1 A G 46 ? ? 87.00 105.20 -18.20 2.20 Y 3 2 "O3'" A U 45 ? ? P A G 46 ? ? OP2 A G 46 ? ? 40.53 105.20 -64.67 2.20 Y 4 2 "O3'" A U 45 ? ? P A G 46 ? ? OP1 A G 46 ? ? 82.29 105.20 -22.91 2.20 Y 5 4 "O3'" A U 26 ? ? P A G 27 ? ? OP2 A G 27 ? ? 90.41 105.20 -14.79 2.20 Y 6 4 "O3'" A U 26 ? ? P A G 27 ? ? OP1 A G 27 ? ? 32.02 105.20 -73.18 2.20 Y 7 4 "O3'" A U 45 ? ? P A G 46 ? ? OP2 A G 46 ? ? 87.72 105.20 -17.48 2.20 Y 8 4 "O3'" A U 45 ? ? P A G 46 ? ? OP1 A G 46 ? ? 34.86 105.20 -70.34 2.20 Y 9 5 "O3'" A U 26 ? ? P A G 27 ? ? OP1 A G 27 ? ? 118.50 110.50 8.00 1.10 Y 10 6 "O3'" A U 45 ? ? P A G 46 ? ? OP2 A G 46 ? ? 80.81 105.20 -24.39 2.20 Y 11 6 "O3'" A U 45 ? ? P A G 46 ? ? OP1 A G 46 ? ? 128.06 110.50 17.56 1.10 Y 12 7 "O3'" A U 26 ? ? P A G 27 ? ? OP2 A G 27 ? ? 58.94 105.20 -46.26 2.20 Y 13 7 "O3'" A U 26 ? ? P A G 27 ? ? OP1 A G 27 ? ? 64.23 105.20 -40.97 2.20 Y 14 7 "O3'" A U 45 ? ? P A G 46 ? ? OP2 A G 46 ? ? 9.93 105.20 -95.27 2.20 Y 15 7 "O3'" A U 45 ? ? P A G 46 ? ? OP1 A G 46 ? ? 126.80 110.50 16.30 1.10 Y 16 8 "O3'" A U 26 ? ? P A G 27 ? ? OP2 A G 27 ? ? 61.22 105.20 -43.98 2.20 Y 17 8 "O3'" A U 26 ? ? P A G 27 ? ? OP1 A G 27 ? ? 139.88 110.50 29.38 1.10 Y 18 9 "O3'" A U 45 ? ? P A G 46 ? ? OP2 A G 46 ? ? 76.05 105.20 -29.15 2.20 Y 19 9 "O3'" A U 45 ? ? P A G 46 ? ? OP1 A G 46 ? ? 131.58 110.50 21.08 1.10 Y 20 9 "O3'" A A 51 ? ? P A C 52 ? ? OP2 A C 52 ? ? 78.70 105.20 -26.50 2.20 Y 21 9 "O3'" A A 51 ? ? P A C 52 ? ? OP1 A C 52 ? ? 129.74 110.50 19.24 1.10 Y 22 10 "O3'" A U 45 ? ? P A G 46 ? ? OP2 A G 46 ? ? 81.81 105.20 -23.39 2.20 Y 23 10 "O3'" A U 45 ? ? P A G 46 ? ? OP1 A G 46 ? ? 127.31 110.50 16.81 1.10 Y # loop_ _pdbx_validate_polymer_linkage.id _pdbx_validate_polymer_linkage.PDB_model_num _pdbx_validate_polymer_linkage.auth_atom_id_1 _pdbx_validate_polymer_linkage.auth_asym_id_1 _pdbx_validate_polymer_linkage.auth_comp_id_1 _pdbx_validate_polymer_linkage.auth_seq_id_1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 _pdbx_validate_polymer_linkage.label_alt_id_1 _pdbx_validate_polymer_linkage.auth_atom_id_2 _pdbx_validate_polymer_linkage.auth_asym_id_2 _pdbx_validate_polymer_linkage.auth_comp_id_2 _pdbx_validate_polymer_linkage.auth_seq_id_2 _pdbx_validate_polymer_linkage.PDB_ins_code_2 _pdbx_validate_polymer_linkage.label_alt_id_2 _pdbx_validate_polymer_linkage.dist 1 1 "O3'" A C 28 ? ? P A A 29 ? ? 3.20 2 2 "O3'" A C 28 ? ? P A A 29 ? ? 3.21 3 3 "O3'" A C 28 ? ? P A A 29 ? ? 3.20 4 4 "O3'" A C 28 ? ? P A A 29 ? ? 3.19 5 5 "O3'" A C 28 ? ? P A A 29 ? ? 3.28 6 6 "O3'" A C 28 ? ? P A A 29 ? ? 3.18 7 7 "O3'" A C 28 ? ? P A A 29 ? ? 3.34 8 8 "O3'" A C 28 ? ? P A A 29 ? ? 3.17 9 9 "O3'" A C 28 ? ? P A A 29 ? ? 3.20 10 10 "O3'" A C 28 ? ? P A A 29 ? ? 3.33 # _em_3d_fitting.entry_id 6XRZ _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 6XRZ _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 109137 _em_3d_reconstruction.resolution 6.9 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 8 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name '28-kDa Frameshift Stimulation Element from the SARS-CoV-2 RNA Genome' _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 6XRZ _em_image_scans.id 1 _em_image_scans.dimension_height ? _em_image_scans.dimension_width ? _em_image_scans.frames_per_image 30 _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 6XRZ _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter 70 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 200 _em_sample_support.grid_type 'Quantifoil R2/1' _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 6XRZ _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6XRZ _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 6XRZ _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.028 # _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 2697049 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Severe acute respiratory syndrome coronavirus 2' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 8.3 _em_image_recording.average_exposure_time 6 _em_image_recording.details ? _em_image_recording.detector_mode COUNTING _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images 10222 # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 ? 1 2 'IMAGE ACQUISITION' ? EPU 2 ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? CTFFIND 4.13 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? 'UCSF Chimera' 1.13.1 ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 CLASSIFICATION ? RELION 3.0.2 1 ? ? 12 RECONSTRUCTION ? RELION 3.0.2 1 ? ? 13 'MODEL REFINEMENT' ? ? ? ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 0.15 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6XRZ 'double helix' 6XRZ 'a-form double helix' 6XRZ 'hairpin loop' 6XRZ 'bulge loop' 6XRZ 'mismatched base pair' 6XRZ 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 10 1_555 A U 5 1_555 -4.240 -2.255 1.324 10.796 -13.341 -9.391 1 A_C9:U4_A A 9 ? A 4 ? ? ? 1 A G 11 1_555 A U 4 1_555 -1.734 -0.770 0.958 22.125 -18.585 -20.352 2 A_G10:U3_A A 10 ? A 3 ? 28 1 1 A G 12 1_555 A U 3 1_555 -1.905 -0.578 1.008 35.488 -20.751 -11.434 3 A_G11:U2_A A 11 ? A 2 ? 28 1 1 A G 13 1_555 A U 2 1_555 -2.251 -0.395 -1.404 23.393 -40.002 -33.358 4 A_G12:U1_A A 12 ? A 1 ? ? ? 1 A U 15 1_555 A G 1 1_555 -2.714 0.793 -1.052 16.979 -20.721 -29.201 5 A_U14:G0_A A 14 ? A 0 ? ? ? 1 A G 17 1_555 A U 46 1_555 2.600 0.458 -0.827 2.058 -64.508 -35.348 6 A_G16:U45_A A 16 ? A 45 ? ? 1 1 A C 18 1_555 A G 45 1_555 0.147 -0.140 -0.078 2.347 -3.584 -0.676 7 A_C17:G44_A A 17 ? A 44 ? 19 1 1 A G 19 1_555 A C 44 1_555 -0.105 -0.128 -0.168 -6.551 -3.947 -1.732 8 A_G18:C43_A A 18 ? A 43 ? 19 1 1 A G 20 1_555 A C 43 1_555 -0.100 -0.128 -0.106 -6.973 -5.573 -2.031 9 A_G19:C42_A A 19 ? A 42 ? 19 1 1 A U 21 1_555 A A 42 1_555 0.063 -0.091 -0.072 -3.387 -5.382 -2.516 10 A_U20:A41_A A 20 ? A 41 ? 20 1 1 A G 22 1_555 A C 41 1_555 -0.099 -0.122 -0.078 -4.756 -4.212 -1.817 11 A_G21:C40_A A 21 ? A 40 ? 19 1 1 A U 23 1_555 A A 40 1_555 0.047 -0.082 -0.069 -2.385 -4.800 -2.856 12 A_U22:A39_A A 22 ? A 39 ? 20 1 1 A A 24 1_555 A U 39 1_555 0.025 -0.080 -0.089 -2.853 -2.644 -3.111 13 A_A23:U38_A A 23 ? A 38 ? 20 1 1 A A 25 1_555 A U 38 1_555 0.012 -0.082 -0.146 -1.128 -4.579 -2.951 14 A_A24:U37_A A 24 ? A 37 ? 20 1 1 A G 26 1_555 A C 37 1_555 -0.115 -0.124 -0.122 -5.225 -4.895 -1.564 15 A_G25:C36_A A 25 ? A 36 ? 19 1 1 A G 28 1_555 A U 36 1_555 -2.108 -0.483 -0.007 -1.900 -11.167 -1.567 16 A_G27:U35_A A 27 ? A 35 ? 28 1 1 A C 29 1_555 A G 35 1_555 0.159 -0.118 -0.032 1.393 -4.355 -1.061 17 A_C28:G34_A A 28 ? A 34 ? 19 1 1 A A 30 1_555 A U 84 1_555 -0.041 -0.122 -0.201 -1.088 -7.488 -0.969 18 A_A29:U83_A A 29 ? A 83 ? 20 1 1 A G 31 1_555 A C 83 1_555 -0.120 -0.131 -0.165 -7.084 -5.260 -1.176 19 A_G30:C82_A A 30 ? A 82 ? 19 1 1 A C 32 1_555 A G 82 1_555 0.165 -0.126 -0.031 -0.480 -2.291 -1.152 20 A_C31:G81_A A 31 ? A 81 ? 19 1 1 A C 33 1_555 A G 81 1_555 0.163 -0.128 -0.068 0.278 -1.609 -1.262 21 A_C32:G80_A A 32 ? A 80 ? 19 1 1 A C 34 1_555 A G 80 1_555 0.162 -0.129 -0.073 0.336 -1.587 -1.227 22 A_C33:G79_A A 33 ? A 79 ? 19 1 1 A G 47 1_555 A U 74 1_555 -2.109 -0.483 -0.007 -1.894 -11.152 -1.563 23 A_G46:U73_A A 46 ? A 73 ? 28 1 1 A C 48 1_555 A G 73 1_555 0.157 -0.124 -0.038 1.434 -3.817 -0.951 24 A_C47:G72_A A 47 ? A 72 ? 19 1 1 A G 49 1_555 A C 72 1_555 -0.111 -0.125 -0.170 -6.363 -5.583 -1.283 25 A_G48:C71_A A 48 ? A 71 ? 19 1 1 A G 50 1_555 A U 71 1_555 -2.066 -0.462 -0.010 -2.150 -6.371 -2.901 26 A_G49:U70_A A 49 ? A 70 ? 28 1 1 A C 51 1_555 A G 70 1_555 0.147 -0.117 -0.039 2.431 -3.388 -1.545 27 A_C50:G69_A A 50 ? A 69 ? 19 1 1 A A 52 1_555 A U 69 1_555 0.012 -0.089 -0.137 -1.337 -4.970 -2.611 28 A_A51:U68_A A 51 ? A 68 ? 20 1 1 A C 53 1_555 A G 67 1_555 0.146 -0.140 -0.078 2.403 -3.505 -0.632 29 A_C52:G66_A A 52 ? A 66 ? 19 1 1 A A 54 1_555 A U 66 1_555 0.022 -0.088 -0.184 -4.979 -2.825 -2.993 30 A_A53:U65_A A 53 ? A 65 ? 20 1 1 A G 55 1_555 A C 65 1_555 -0.110 -0.122 -0.136 -5.810 -4.625 -1.592 31 A_G54:C64_A A 54 ? A 64 ? 19 1 1 A G 56 1_555 A A 64 1_555 -0.272 0.594 -1.685 -9.828 -14.311 -14.636 32 A_G55:A63_A A 55 ? A 63 ? 8 1 1 A A 58 1_555 A U 63 1_555 0.015 -0.005 0.149 22.579 -4.794 -8.912 33 A_A57:U62_A A 57 ? A 62 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 10 1_555 A U 5 1_555 A G 11 1_555 A U 4 1_555 -0.722 -0.634 2.965 -2.365 9.428 47.758 -1.416 0.713 2.830 11.505 2.886 48.680 1 AA_C9G10:U3U4_AA A 9 ? A 4 ? A 10 ? A 3 ? 1 A G 11 1_555 A U 4 1_555 A G 12 1_555 A U 3 1_555 0.839 -0.960 2.812 -0.577 -1.537 34.276 -1.419 -1.501 2.837 -2.607 0.979 34.314 2 AA_G10G11:U2U3_AA A 10 ? A 3 ? A 11 ? A 2 ? 1 A G 12 1_555 A U 3 1_555 A G 13 1_555 A U 2 1_555 -1.195 -1.001 3.778 8.817 -0.936 33.570 -1.519 3.512 3.391 -1.587 -14.943 34.689 3 AA_G11G12:U1U2_AA A 11 ? A 2 ? A 12 ? A 1 ? 1 A G 13 1_555 A U 2 1_555 A U 15 1_555 A G 1 1_555 -2.572 -0.638 4.656 8.369 -1.891 52.451 -0.548 3.611 4.247 -2.124 -9.398 53.099 4 AA_G12U14:G0U1_AA A 12 ? A 1 ? A 14 ? A 0 ? 1 A U 15 1_555 A G 1 1_555 A G 17 1_555 A U 46 1_555 -0.826 -4.802 4.658 -6.015 30.255 93.037 -3.865 0.422 3.404 20.418 4.059 96.890 5 AA_U14G16:U45G0_AA A 14 ? A 0 ? A 16 ? A 45 ? 1 A G 17 1_555 A U 46 1_555 A C 18 1_555 A G 45 1_555 1.874 -1.255 3.420 -9.424 -12.301 25.693 0.215 -5.653 2.871 -24.977 19.135 29.936 6 AA_G16C17:G44U45_AA A 16 ? A 45 ? A 17 ? A 44 ? 1 A C 18 1_555 A G 45 1_555 A G 19 1_555 A C 44 1_555 -0.037 -1.897 3.476 1.212 8.634 30.962 -4.953 0.281 2.854 15.785 -2.216 32.137 7 AA_C17G18:C43G44_AA A 17 ? A 44 ? A 18 ? A 43 ? 1 A G 19 1_555 A C 44 1_555 A G 20 1_555 A C 43 1_555 0.142 -1.681 3.290 -0.145 6.417 32.211 -4.028 -0.276 2.909 11.424 0.258 32.827 8 AA_G18G19:C42C43_AA A 18 ? A 43 ? A 19 ? A 42 ? 1 A G 20 1_555 A C 43 1_555 A U 21 1_555 A A 42 1_555 0.208 -1.608 3.220 0.332 5.242 32.621 -3.669 -0.312 2.935 9.257 -0.586 33.030 9 AA_G19U20:A41C42_AA A 19 ? A 42 ? A 20 ? A 41 ? 1 A U 21 1_555 A A 42 1_555 A G 22 1_555 A C 41 1_555 0.222 -1.622 3.262 0.189 9.770 31.511 -4.400 -0.362 2.655 17.472 -0.337 32.955 10 AA_U20G21:C40A41_AA A 20 ? A 41 ? A 21 ? A 40 ? 1 A G 22 1_555 A C 41 1_555 A U 23 1_555 A A 40 1_555 0.177 -1.616 3.280 0.409 6.412 32.462 -3.875 -0.246 2.918 11.332 -0.722 33.075 11 AA_G21U22:A39C40_AA A 21 ? A 40 ? A 22 ? A 39 ? 1 A U 23 1_555 A A 40 1_555 A A 24 1_555 A U 39 1_555 0.137 -1.604 3.249 0.182 10.658 32.240 -4.322 -0.208 2.603 18.569 -0.317 33.912 12 AA_U22A23:U38A39_AA A 22 ? A 39 ? A 23 ? A 38 ? 1 A A 24 1_555 A U 39 1_555 A A 25 1_555 A U 38 1_555 0.184 -1.653 3.239 0.343 7.775 31.671 -4.207 -0.272 2.768 13.984 -0.616 32.589 13 AA_A23A24:U37U38_AA A 23 ? A 38 ? A 24 ? A 37 ? 1 A A 25 1_555 A U 38 1_555 A G 26 1_555 A C 37 1_555 0.219 -1.764 3.397 -0.328 8.268 31.445 -4.560 -0.447 2.851 14.935 0.592 32.489 14 AA_A24G25:C36U37_AA A 24 ? A 37 ? A 25 ? A 36 ? 1 A G 26 1_555 A C 37 1_555 A G 28 1_555 A U 36 1_555 -1.059 -2.583 4.354 23.302 12.310 44.567 -3.970 3.102 2.763 14.804 -28.023 51.432 15 AA_G25G27:U35C36_AA A 25 ? A 36 ? A 27 ? A 35 ? 1 A G 28 1_555 A U 36 1_555 A C 29 1_555 A G 35 1_555 -0.059 -1.438 3.118 -1.510 4.504 40.978 -2.494 -0.067 2.951 6.408 2.148 41.241 16 AA_G27C28:G34U35_AA A 27 ? A 35 ? A 28 ? A 34 ? 1 A A 30 1_555 A U 84 1_555 A G 31 1_555 A C 83 1_555 -0.040 -1.852 3.380 -0.434 7.875 32.208 -4.530 0.000 2.860 13.935 0.768 33.135 17 AA_A29G30:C82U83_AA A 29 ? A 83 ? A 30 ? A 82 ? 1 A G 31 1_555 A C 83 1_555 A C 32 1_555 A G 82 1_555 0.155 -1.663 3.066 -0.226 3.734 33.152 -3.461 -0.305 2.865 6.519 0.395 33.356 18 AA_G30C31:G81C82_AA A 30 ? A 82 ? A 31 ? A 81 ? 1 A C 32 1_555 A G 82 1_555 A C 33 1_555 A G 81 1_555 0.224 -1.763 3.228 1.222 6.489 31.480 -4.269 -0.200 2.824 11.797 -2.223 32.148 19 AA_C31C32:G80G81_AA A 31 ? A 81 ? A 32 ? A 80 ? 1 A C 33 1_555 A G 81 1_555 A C 34 1_555 A G 80 1_555 0.252 -1.767 3.260 1.147 6.859 31.787 -4.286 -0.261 2.834 12.339 -2.063 32.520 20 AA_C32C33:G79G80_AA A 32 ? A 80 ? A 33 ? A 79 ? 1 A G 47 1_555 A U 74 1_555 A C 48 1_555 A G 73 1_555 -0.068 -1.435 3.113 -1.540 4.744 40.999 -2.508 -0.058 2.937 6.743 2.189 41.288 21 AA_G46C47:G72U73_AA A 46 ? A 73 ? A 47 ? A 72 ? 1 A C 48 1_555 A G 73 1_555 A G 49 1_555 A C 72 1_555 0.047 -1.786 3.447 1.120 9.375 30.466 -4.919 0.114 2.788 17.324 -2.069 31.862 22 AA_C47G48:C71G72_AA A 47 ? A 72 ? A 48 ? A 71 ? 1 A G 49 1_555 A C 72 1_555 A G 50 1_555 A U 71 1_555 0.104 -1.733 2.988 -3.768 9.433 26.748 -5.277 -0.916 2.226 19.519 7.796 28.579 23 AA_G48G49:U70C71_AA A 48 ? A 71 ? A 49 ? A 70 ? 1 A G 50 1_555 A U 71 1_555 A C 51 1_555 A G 70 1_555 0.122 -1.336 3.154 -1.394 7.015 40.120 -2.641 -0.319 2.884 10.129 2.013 40.727 24 AA_G49C50:G69U70_AA A 49 ? A 70 ? A 50 ? A 69 ? 1 A C 51 1_555 A G 70 1_555 A A 52 1_555 A U 69 1_555 0.076 -1.720 3.342 0.732 9.562 31.567 -4.575 -0.016 2.720 17.090 -1.308 32.956 25 AA_C50A51:U68G69_AA A 50 ? A 69 ? A 51 ? A 68 ? 1 A A 52 1_555 A U 69 1_555 A C 53 1_555 A G 67 1_555 3.253 -1.016 3.637 -4.635 12.702 54.788 -1.827 -3.721 3.088 13.573 4.952 56.307 26 AA_A51C52:G66U68_AA A 51 ? A 68 ? A 52 ? A 66 ? 1 A C 53 1_555 A G 67 1_555 A A 54 1_555 A U 66 1_555 -0.138 -1.864 3.441 1.220 8.671 31.455 -4.791 0.453 2.833 15.619 -2.198 32.621 27 AA_C52A53:U65G66_AA A 52 ? A 66 ? A 53 ? A 65 ? 1 A A 54 1_555 A U 66 1_555 A G 55 1_555 A C 65 1_555 0.251 -1.743 3.301 -0.010 6.932 31.426 -4.328 -0.454 2.861 12.607 0.018 32.162 28 AA_A53G54:C64U65_AA A 53 ? A 65 ? A 54 ? A 64 ? 1 A G 55 1_555 A C 65 1_555 A G 56 1_555 A A 64 1_555 -0.530 -1.598 3.457 9.809 19.873 34.939 -4.256 1.734 2.081 29.699 -14.659 41.189 29 AA_G54G55:A63C64_AA A 54 ? A 64 ? A 55 ? A 63 ? 1 A G 56 1_555 A A 64 1_555 A A 58 1_555 A U 63 1_555 -1.160 -1.331 4.055 11.899 17.355 42.306 -3.283 2.561 2.919 22.461 -15.400 47.034 30 AA_G55A57:U62A63_AA A 55 ? A 63 ? A 57 ? A 62 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' P41GM103832 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R01GM079429 2 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' S10OD021600 3 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R01AI148382 4 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' U24GM129564 5 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' P01AI120943 6 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R35GM122579 7 # _atom_sites.entry_id 6XRZ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_