HEADER OXIDOREDUCTASE/INHIBITOR 17-JUL-20 6XT3 TITLE CRYSTAL STRUCTURE OF E.COLI DSBA IN COMPLEX WITH 3-(3-(CARBOXYMETHYL)- TITLE 2 6-(3-METHOXYPHENYL)BENZOFURAN-2-YL)BENZOIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DSBA, DSF, PPFA, B3860, JW3832; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS INHIBITOR, COMPLEX, DISULFIDE OXIDOREDUCTASE, FRAGMENTS, KEYWDS 2 OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR COMPLEX, OXIDOREDUCTASE, KEYWDS 3 OXIDOREDUCTASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.WANG,B.HERAS REVDAT 3 18-OCT-23 6XT3 1 REMARK REVDAT 2 25-AUG-21 6XT3 1 JRNL REVDAT 1 11-AUG-21 6XT3 0 JRNL AUTH L.F.DUNCAN,G.WANG,O.V.ILYICHOVA,R.DHOUIB,M.TOTSIKA, JRNL AUTH 2 M.J.SCANLON,B.HERAS,B.M.ABBOTT JRNL TITL ELABORATION OF A BENZOFURAN SCAFFOLD AND EVALUATION OF JRNL TITL 2 BINDING AFFINITY AND INHIBITION OF ESCHERICHIA COLI DSBA: A JRNL TITL 3 FRAGMENT-BASED DRUG DESIGN APPROACH TO NOVEL ANTIVIRULENCE JRNL TITL 4 COMPOUNDS. JRNL REF BIOORG.MED.CHEM. V. 45 16315 2021 JRNL REFN ESSN 1464-3391 JRNL PMID 34364222 JRNL DOI 10.1016/J.BMC.2021.116315 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31059 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1589 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.7400 - 4.4200 1.00 2762 132 0.1737 0.1773 REMARK 3 2 4.4100 - 3.5100 1.00 2710 132 0.1625 0.1861 REMARK 3 3 3.5000 - 3.0600 1.00 2660 168 0.1911 0.2144 REMARK 3 4 3.0600 - 2.7800 1.00 2688 143 0.2100 0.2834 REMARK 3 5 2.7800 - 2.5800 1.00 2687 114 0.2208 0.2368 REMARK 3 6 2.5800 - 2.4300 1.00 2705 143 0.2339 0.2939 REMARK 3 7 2.4300 - 2.3100 1.00 2638 163 0.2294 0.2846 REMARK 3 8 2.3100 - 2.2100 1.00 2658 162 0.2689 0.2949 REMARK 3 9 2.2100 - 2.1200 1.00 2628 164 0.2704 0.2821 REMARK 3 10 2.1200 - 2.0500 1.00 2684 149 0.2958 0.3598 REMARK 3 11 2.0500 - 1.9900 1.00 2650 119 0.3213 0.3269 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2979 REMARK 3 ANGLE : 0.364 4053 REMARK 3 CHIRALITY : 0.035 445 REMARK 3 PLANARITY : 0.002 531 REMARK 3 DIHEDRAL : 10.595 402 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.1124 -9.8309 1.1692 REMARK 3 T TENSOR REMARK 3 T11: 0.3217 T22: 0.3300 REMARK 3 T33: 0.3184 T12: -0.0697 REMARK 3 T13: -0.0330 T23: -0.0774 REMARK 3 L TENSOR REMARK 3 L11: 1.0638 L22: 3.6764 REMARK 3 L33: 4.0632 L12: -0.3362 REMARK 3 L13: 1.3493 L23: 1.9589 REMARK 3 S TENSOR REMARK 3 S11: 0.1166 S12: 0.3119 S13: -0.1697 REMARK 3 S21: -0.2435 S22: -0.0058 S23: 0.1714 REMARK 3 S31: 0.0476 S32: 0.3993 S33: -0.0549 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.9521 -5.6645 9.8064 REMARK 3 T TENSOR REMARK 3 T11: 0.2019 T22: 0.2315 REMARK 3 T33: 0.2105 T12: -0.0393 REMARK 3 T13: 0.0033 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 1.8466 L22: 2.2957 REMARK 3 L33: 3.4015 L12: -0.2987 REMARK 3 L13: 0.5547 L23: 1.2593 REMARK 3 S TENSOR REMARK 3 S11: -0.1029 S12: 0.1139 S13: -0.1330 REMARK 3 S21: -0.1958 S22: 0.0253 S23: 0.0932 REMARK 3 S31: -0.0770 S32: 0.2178 S33: 0.0532 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9730 9.4632 21.4079 REMARK 3 T TENSOR REMARK 3 T11: 0.5530 T22: 0.3536 REMARK 3 T33: 0.6016 T12: 0.1063 REMARK 3 T13: -0.0350 T23: -0.0518 REMARK 3 L TENSOR REMARK 3 L11: 0.6349 L22: 2.2051 REMARK 3 L33: 1.5456 L12: -0.1034 REMARK 3 L13: -0.3895 L23: -0.9600 REMARK 3 S TENSOR REMARK 3 S11: -0.1286 S12: 0.1754 S13: 0.5911 REMARK 3 S21: -0.6503 S22: -0.2491 S23: 0.4232 REMARK 3 S31: -0.7155 S32: -0.3376 S33: 0.3774 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8972 -7.8801 23.5151 REMARK 3 T TENSOR REMARK 3 T11: 0.3379 T22: 0.2441 REMARK 3 T33: 0.4961 T12: -0.0036 REMARK 3 T13: 0.1015 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 1.4934 L22: 1.1569 REMARK 3 L33: 3.6994 L12: 0.2859 REMARK 3 L13: 0.0288 L23: 1.8279 REMARK 3 S TENSOR REMARK 3 S11: 0.0504 S12: 0.0493 S13: -0.0242 REMARK 3 S21: 0.1362 S22: -0.1227 S23: 0.3011 REMARK 3 S31: 0.0398 S32: -0.1787 S33: 0.1272 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 50 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4853 -7.0651 18.7970 REMARK 3 T TENSOR REMARK 3 T11: 0.3772 T22: 0.3518 REMARK 3 T33: 0.4597 T12: 0.0219 REMARK 3 T13: -0.0050 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 2.4085 L22: 6.3160 REMARK 3 L33: 4.2851 L12: 0.0265 REMARK 3 L13: 2.5652 L23: 1.1292 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: -0.1258 S13: 0.5317 REMARK 3 S21: -0.4114 S22: -0.3988 S23: 0.7178 REMARK 3 S31: -0.0230 S32: -0.6025 S33: 0.2145 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3786 -20.7488 14.8000 REMARK 3 T TENSOR REMARK 3 T11: 0.2710 T22: 0.2449 REMARK 3 T33: 0.3470 T12: -0.0494 REMARK 3 T13: 0.0813 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 5.8226 L22: 5.0405 REMARK 3 L33: 3.7137 L12: 0.9366 REMARK 3 L13: -0.7838 L23: 0.8159 REMARK 3 S TENSOR REMARK 3 S11: -0.1237 S12: 0.2500 S13: -0.5656 REMARK 3 S21: -0.7352 S22: -0.0070 S23: -0.6140 REMARK 3 S31: -0.0429 S32: 0.1005 S33: 0.1394 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 115 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.4495 -27.4973 12.2940 REMARK 3 T TENSOR REMARK 3 T11: 0.3805 T22: 0.4739 REMARK 3 T33: 0.2610 T12: -0.1163 REMARK 3 T13: 0.0621 T23: -0.0886 REMARK 3 L TENSOR REMARK 3 L11: 8.6722 L22: 4.5187 REMARK 3 L33: 2.0058 L12: 2.0643 REMARK 3 L13: 2.5574 L23: 0.2316 REMARK 3 S TENSOR REMARK 3 S11: -0.6522 S12: 0.5493 S13: -0.7102 REMARK 3 S21: -0.9465 S22: 0.1777 S23: -0.1041 REMARK 3 S31: 0.6531 S32: -0.7044 S33: 0.3384 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 129 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4701 -3.3090 12.9963 REMARK 3 T TENSOR REMARK 3 T11: 0.5049 T22: 0.4731 REMARK 3 T33: 0.4627 T12: 0.1420 REMARK 3 T13: -0.0528 T23: 0.0883 REMARK 3 L TENSOR REMARK 3 L11: 2.3104 L22: 5.7376 REMARK 3 L33: 2.8310 L12: 0.7316 REMARK 3 L13: -0.1425 L23: 0.9529 REMARK 3 S TENSOR REMARK 3 S11: -0.0313 S12: 0.2173 S13: 0.7997 REMARK 3 S21: -1.0581 S22: -0.0393 S23: 0.5666 REMARK 3 S31: -0.8554 S32: -0.6548 S33: 0.0849 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 162 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3303 4.9269 27.1785 REMARK 3 T TENSOR REMARK 3 T11: 0.5734 T22: 0.3206 REMARK 3 T33: 0.5033 T12: -0.0424 REMARK 3 T13: 0.2165 T23: -0.0255 REMARK 3 L TENSOR REMARK 3 L11: 6.2993 L22: 8.4671 REMARK 3 L33: 4.9107 L12: -1.6559 REMARK 3 L13: 0.7097 L23: -5.4921 REMARK 3 S TENSOR REMARK 3 S11: 0.2546 S12: -0.1373 S13: -0.0095 REMARK 3 S21: -0.6933 S22: -0.3161 S23: -0.6080 REMARK 3 S31: -0.0720 S32: 0.9798 S33: 0.2363 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 171 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5390 3.5081 30.7473 REMARK 3 T TENSOR REMARK 3 T11: 0.4395 T22: 0.2423 REMARK 3 T33: 0.6205 T12: 0.0285 REMARK 3 T13: 0.1873 T23: -0.0931 REMARK 3 L TENSOR REMARK 3 L11: 2.4544 L22: 3.4355 REMARK 3 L33: 5.6444 L12: 2.2253 REMARK 3 L13: 0.9249 L23: 0.6564 REMARK 3 S TENSOR REMARK 3 S11: 0.1179 S12: -0.2577 S13: 0.3510 REMARK 3 S21: -0.0411 S22: -0.2617 S23: 0.3862 REMARK 3 S31: -0.2800 S32: -0.5143 S33: 0.2068 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XT3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-AUG-20. REMARK 100 THE DEPOSITION ID IS D_1000250695. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31068 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 37.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.89100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1FVK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-13% PEG 8000, 5-7.5% GLYCEROL, 1 MM REMARK 280 COPPER(II) CHLORIDE, 100 MM SODIUM CACODYLATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.05500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.68000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.05500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.68000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 384 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 189 REMARK 465 LYS B 189 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 GLN A 146 CG CD OE1 NE2 REMARK 470 ARG A 148 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 GLN A 164 CG CD OE1 NE2 REMARK 470 ASP A 167 CG OD1 OD2 REMARK 470 GLN A 176 CG CD OE1 NE2 REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 GLU B 52 CG CD OE1 OE2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 LYS B 98 CG CD CE NZ REMARK 470 LYS B 132 CG CD CE NZ REMARK 470 ARG B 148 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 158 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 7 -76.47 -102.36 REMARK 500 LYS A 98 -63.83 -90.80 REMARK 500 LYS B 7 -82.49 -88.89 REMARK 500 GLU B 52 -132.95 51.11 REMARK 500 PHE B 63 30.53 -78.03 REMARK 500 LYS B 98 -74.15 -95.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 422 DISTANCE = 6.79 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 1 N REMARK 620 2 ALA B 1 O 80.6 REMARK 620 3 GLU B 4 OE2 150.9 95.7 REMARK 620 4 ASP B 44 OD1 98.0 24.8 72.0 REMARK 620 5 ASP B 44 OD2 101.1 25.3 70.7 4.1 REMARK 620 N 1 2 3 4 DBREF 6XT3 A 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 DBREF 6XT3 B 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 SEQRES 1 A 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 A 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 A 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 A 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 A 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 A 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 A 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 A 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 A 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 A 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 A 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 A 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 A 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 A 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 A 189 LYS TYR LEU SER GLU LYS LYS SEQRES 1 B 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 B 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 B 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 B 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 B 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 B 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 B 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 B 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 B 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 B 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 B 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 B 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 B 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 B 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 B 189 LYS TYR LEU SER GLU LYS LYS HET VED A 201 46 HET CU B 201 1 HETNAM VED 3-[3-(CARBOXYMETHYL)-6-(3-METHOXYPHENYL)-1-BENZOFURAN- HETNAM 2 VED 2-YL]BENZOIC ACID HETNAM CU COPPER (II) ION FORMUL 3 VED C24 H18 O6 FORMUL 4 CU CU 2+ FORMUL 5 HOH *240(H2 O) HELIX 1 AA1 CYS A 30 VAL A 39 1 10 HELIX 2 AA2 HIS A 41 LYS A 48 1 8 HELIX 3 AA3 GLY A 65 GLY A 83 1 19 HELIX 4 AA4 VAL A 84 LYS A 98 1 15 HELIX 5 AA5 SER A 104 ALA A 115 1 12 HELIX 6 AA6 LYS A 118 ASN A 127 1 10 HELIX 7 AA7 SER A 128 VAL A 145 1 18 HELIX 8 AA8 PRO A 163 MET A 166 5 4 HELIX 9 AA9 ASN A 170 GLU A 187 1 18 HELIX 10 AB1 CYS B 30 VAL B 39 1 10 HELIX 11 AB2 HIS B 41 LEU B 50 1 10 HELIX 12 AB3 GLY B 65 GLY B 83 1 19 HELIX 13 AB4 VAL B 84 GLN B 97 1 14 HELIX 14 AB5 SER B 104 ALA B 115 1 12 HELIX 15 AB6 LYS B 118 ASN B 127 1 10 HELIX 16 AB7 SER B 128 VAL B 145 1 18 HELIX 17 AB8 PRO B 163 MET B 166 5 4 HELIX 18 AB9 ASN B 170 GLU B 187 1 18 SHEET 1 AA1 5 TYR A 9 THR A 11 0 SHEET 2 AA1 5 TYR A 159 LEU A 161 -1 O GLN A 160 N THR A 10 SHEET 3 AA1 5 ALA A 152 VAL A 155 -1 N MET A 153 O LEU A 161 SHEET 4 AA1 5 VAL A 22 PHE A 26 -1 N LEU A 23 O PHE A 154 SHEET 5 AA1 5 MET A 56 HIS A 60 1 O THR A 57 N VAL A 22 SHEET 1 AA2 5 TYR B 9 THR B 11 0 SHEET 2 AA2 5 TYR B 159 LEU B 161 -1 O GLN B 160 N THR B 10 SHEET 3 AA2 5 ALA B 152 VAL B 155 -1 N MET B 153 O LEU B 161 SHEET 4 AA2 5 VAL B 22 PHE B 26 -1 N PHE B 25 O ALA B 152 SHEET 5 AA2 5 MET B 56 HIS B 60 1 O THR B 57 N VAL B 22 SSBOND 1 CYS A 30 CYS A 33 1555 1555 2.21 SSBOND 2 CYS B 30 CYS B 33 1555 1555 2.16 LINK N ALA B 1 CU CU B 201 1555 1555 2.22 LINK O ALA B 1 CU CU B 201 1555 1555 1.99 LINK OE2 GLU B 4 CU CU B 201 1555 1555 2.22 LINK OD1 ASP B 44 CU CU B 201 1555 4546 2.17 LINK OD2 ASP B 44 CU CU B 201 1555 4546 2.55 CISPEP 1 VAL A 150 PRO A 151 0 0.00 CISPEP 2 VAL B 150 PRO B 151 0 -1.23 CRYST1 118.110 63.360 74.694 90.00 125.62 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008467 0.000000 0.006066 0.00000 SCALE2 0.000000 0.015783 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016470 0.00000