HEADER HYDROLASE 20-JAN-20 6XUQ TITLE HUMAN ECTO-5'-NUCLEOTIDASE (CD73) IN COMPLEX WITH A1618 (COMPOUND 1B TITLE 2 IN PUBLICATION) IN THE CLOSED STATE IN CRYSTAL FORM III COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-NUCLEOTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 5'-NT,ECTO-5'-NUCLEOTIDASE; COMPND 5 EC: 3.1.3.5; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: CD73 CONSTRUCT 8.0 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NT5E, NT5, NTE; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS NON-NUCLEOTIDE INHIBITOR, HYDROLASE, ARCUS BIOSCIENCES EXPDTA X-RAY DIFFRACTION AUTHOR N.STRATER REVDAT 4 24-JAN-24 6XUQ 1 REMARK REVDAT 3 22-JUL-20 6XUQ 1 TITLE REVDAT 2 06-MAY-20 6XUQ 1 JRNL REVDAT 1 22-APR-20 6XUQ 0 JRNL AUTH J.W.BEATTY,E.A.LINDSEY,R.THOMAS-TRAN,L.DEBIEN,D.MANDAL, JRNL AUTH 2 J.L.JEFFREY,A.T.TRAN,J.FOURNIER,S.D.JACOB,X.YAN,S.L.DREW, JRNL AUTH 3 E.GINN,A.CHEN,A.T.PHAM,S.ZHAO,L.JIN,S.W.YOUNG,N.P.WALKER, JRNL AUTH 4 M.R.LELETI,S.MOSCHUTZ,N.STRATER,J.P.POWERS,K.V.LAWSON JRNL TITL DISCOVERY OF POTENT AND SELECTIVE NON-NUCLEOTIDE SMALL JRNL TITL 2 MOLECULE INHIBITORS OF CD73. JRNL REF J.MED.CHEM. V. 63 3935 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32212732 JRNL DOI 10.1021/ACS.JMEDCHEM.9B01713 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 42108 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.620 REMARK 3 FREE R VALUE TEST SET COUNT : 1103 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.38 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 843 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2835 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 821 REMARK 3 BIN R VALUE (WORKING SET) : 0.2824 REMARK 3 BIN FREE R VALUE : 0.3256 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 2.61 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 22 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3997 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 218 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.98340 REMARK 3 B22 (A**2) : -0.65470 REMARK 3 B33 (A**2) : 2.63810 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.350 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.175 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.150 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.172 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.149 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4129 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5601 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1441 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 719 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4129 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 530 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4898 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.19 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.49 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.48 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -20.1990 20.1271 -29.1902 REMARK 3 T TENSOR REMARK 3 T11: -0.2723 T22: 0.2773 REMARK 3 T33: -0.2018 T12: 0.0590 REMARK 3 T13: -0.0240 T23: -0.0629 REMARK 3 L TENSOR REMARK 3 L11: 0.5217 L22: 0.2976 REMARK 3 L33: 4.4178 L12: 0.1364 REMARK 3 L13: 0.7326 L23: -0.0413 REMARK 3 S TENSOR REMARK 3 S11: -0.1337 S12: 0.0943 S13: 0.1317 REMARK 3 S21: 0.0236 S22: -0.0668 S23: -0.0145 REMARK 3 S31: -0.2820 S32: 0.1306 S33: 0.2004 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XUQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1292106313. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80202 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 47.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.482 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.53 REMARK 200 R MERGE FOR SHELL (I) : 3.38100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.370 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: BUSTER 2.10.3 REMARK 200 STARTING MODEL: 4H2I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR: 7.5 % PEG 6.000, 0.1 M MES REMARK 280 PH 6.2. DROP: 1 MICRO-L CRYSTALLIZATION BUFFER + 1 MICRO-L OF 3 REMARK 280 MG/ML CD73 IN 10 MM TRIS PH 8.0, 10 MICRO-M ZNCL2 AND 1 MM OF REMARK 280 COMPOUND. CRYO: 20% PEG200 IN CRYSTALLIZATION DROP, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 117.83000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 117.83000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.54500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.92500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.54500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.92500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 117.83000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.54500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.92500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 117.83000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.54500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 46.92500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -53.09000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -117.83000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 8 REMARK 465 GLU A 9 REMARK 465 TRP A 10 REMARK 465 SER A 11 REMARK 465 TRP A 12 REMARK 465 VAL A 13 REMARK 465 PHE A 14 REMARK 465 LEU A 15 REMARK 465 PHE A 16 REMARK 465 PHE A 17 REMARK 465 LEU A 18 REMARK 465 SER A 19 REMARK 465 VAL A 20 REMARK 465 THR A 21 REMARK 465 THR A 22 REMARK 465 GLY A 23 REMARK 465 VAL A 24 REMARK 465 HIS A 25 REMARK 465 SER A 26 REMARK 465 ARG A 374 REMARK 465 HIS A 375 REMARK 465 THR A 376 REMARK 465 ASP A 377 REMARK 465 GLU A 378 REMARK 465 MET A 379 REMARK 465 PHE A 380 REMARK 465 TRP A 381 REMARK 465 ASN A 382 REMARK 465 GLY A 550 REMARK 465 GLY A 551 REMARK 465 GLY A 552 REMARK 465 GLY A 553 REMARK 465 ALA A 554 REMARK 465 GLY A 555 REMARK 465 GLY A 556 REMARK 465 GLY A 557 REMARK 465 GLY A 558 REMARK 465 HIS A 559 REMARK 465 HIS A 560 REMARK 465 HIS A 561 REMARK 465 HIS A 562 REMARK 465 HIS A 563 REMARK 465 HIS A 564 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 48 6.27 86.44 REMARK 500 VAL A 52 -66.98 -99.64 REMARK 500 GLN A 88 133.57 70.88 REMARK 500 LEU A 131 -61.01 -122.91 REMARK 500 SER A 141 109.96 -176.77 REMARK 500 HIS A 243 -47.85 80.75 REMARK 500 TYR A 281 -119.39 50.49 REMARK 500 ASN A 402 45.29 -75.10 REMARK 500 LEU A 516 64.84 -108.51 REMARK 500 ARG A 517 134.77 133.26 REMARK 500 LYS A 536 -58.29 68.83 REMARK 500 TYR A 539 55.19 -150.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 36 OD1 REMARK 620 2 HIS A 38 NE2 110.5 REMARK 620 3 ASP A 85 OD2 92.0 102.8 REMARK 620 4 O1T A 604 O4 160.9 86.0 93.6 REMARK 620 5 HOH A 703 O 99.9 72.8 168.2 75.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 85 OD2 REMARK 620 2 ASN A 117 OD1 103.3 REMARK 620 3 HIS A 220 NE2 78.0 100.6 REMARK 620 4 HIS A 243 ND1 169.4 87.2 101.3 REMARK 620 5 O1T A 604 O3 80.2 87.9 157.9 99.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 213 O REMARK 620 2 ASP A 237 OD1 132.7 REMARK 620 3 ASP A 237 OD2 82.0 50.9 REMARK 620 4 GLY A 298 O 92.4 90.2 98.5 REMARK 620 5 HOH A 713 O 76.7 88.6 68.6 163.9 REMARK 620 6 HOH A 890 O 103.9 123.4 169.3 90.3 103.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue O1T A 604 DBREF 6XUQ A 27 549 UNP P21589 5NTD_HUMAN 27 549 SEQADV 6XUQ MET A 8 UNP P21589 INITIATING METHIONINE SEQADV 6XUQ GLU A 9 UNP P21589 EXPRESSION TAG SEQADV 6XUQ TRP A 10 UNP P21589 EXPRESSION TAG SEQADV 6XUQ SER A 11 UNP P21589 EXPRESSION TAG SEQADV 6XUQ TRP A 12 UNP P21589 EXPRESSION TAG SEQADV 6XUQ VAL A 13 UNP P21589 EXPRESSION TAG SEQADV 6XUQ PHE A 14 UNP P21589 EXPRESSION TAG SEQADV 6XUQ LEU A 15 UNP P21589 EXPRESSION TAG SEQADV 6XUQ PHE A 16 UNP P21589 EXPRESSION TAG SEQADV 6XUQ PHE A 17 UNP P21589 EXPRESSION TAG SEQADV 6XUQ LEU A 18 UNP P21589 EXPRESSION TAG SEQADV 6XUQ SER A 19 UNP P21589 EXPRESSION TAG SEQADV 6XUQ VAL A 20 UNP P21589 EXPRESSION TAG SEQADV 6XUQ THR A 21 UNP P21589 EXPRESSION TAG SEQADV 6XUQ THR A 22 UNP P21589 EXPRESSION TAG SEQADV 6XUQ GLY A 23 UNP P21589 EXPRESSION TAG SEQADV 6XUQ VAL A 24 UNP P21589 EXPRESSION TAG SEQADV 6XUQ HIS A 25 UNP P21589 EXPRESSION TAG SEQADV 6XUQ SER A 26 UNP P21589 EXPRESSION TAG SEQADV 6XUQ ASP A 53 UNP P21589 ASN 53 CONFLICT SEQADV 6XUQ ASP A 311 UNP P21589 ASN 311 CONFLICT SEQADV 6XUQ ASP A 333 UNP P21589 ASN 333 CONFLICT SEQADV 6XUQ ASP A 403 UNP P21589 ASN 403 CONFLICT SEQADV 6XUQ GLY A 550 UNP P21589 EXPRESSION TAG SEQADV 6XUQ GLY A 551 UNP P21589 EXPRESSION TAG SEQADV 6XUQ GLY A 552 UNP P21589 EXPRESSION TAG SEQADV 6XUQ GLY A 553 UNP P21589 EXPRESSION TAG SEQADV 6XUQ ALA A 554 UNP P21589 EXPRESSION TAG SEQADV 6XUQ GLY A 555 UNP P21589 EXPRESSION TAG SEQADV 6XUQ GLY A 556 UNP P21589 EXPRESSION TAG SEQADV 6XUQ GLY A 557 UNP P21589 EXPRESSION TAG SEQADV 6XUQ GLY A 558 UNP P21589 EXPRESSION TAG SEQADV 6XUQ HIS A 559 UNP P21589 EXPRESSION TAG SEQADV 6XUQ HIS A 560 UNP P21589 EXPRESSION TAG SEQADV 6XUQ HIS A 561 UNP P21589 EXPRESSION TAG SEQADV 6XUQ HIS A 562 UNP P21589 EXPRESSION TAG SEQADV 6XUQ HIS A 563 UNP P21589 EXPRESSION TAG SEQADV 6XUQ HIS A 564 UNP P21589 EXPRESSION TAG SEQRES 1 A 557 MET GLU TRP SER TRP VAL PHE LEU PHE PHE LEU SER VAL SEQRES 2 A 557 THR THR GLY VAL HIS SER TRP GLU LEU THR ILE LEU HIS SEQRES 3 A 557 THR ASN ASP VAL HIS SER ARG LEU GLU GLN THR SER GLU SEQRES 4 A 557 ASP SER SER LYS CYS VAL ASP ALA SER ARG CYS MET GLY SEQRES 5 A 557 GLY VAL ALA ARG LEU PHE THR LYS VAL GLN GLN ILE ARG SEQRES 6 A 557 ARG ALA GLU PRO ASN VAL LEU LEU LEU ASP ALA GLY ASP SEQRES 7 A 557 GLN TYR GLN GLY THR ILE TRP PHE THR VAL TYR LYS GLY SEQRES 8 A 557 ALA GLU VAL ALA HIS PHE MET ASN ALA LEU ARG TYR ASP SEQRES 9 A 557 ALA MET ALA LEU GLY ASN HIS GLU PHE ASP ASN GLY VAL SEQRES 10 A 557 GLU GLY LEU ILE GLU PRO LEU LEU LYS GLU ALA LYS PHE SEQRES 11 A 557 PRO ILE LEU SER ALA ASN ILE LYS ALA LYS GLY PRO LEU SEQRES 12 A 557 ALA SER GLN ILE SER GLY LEU TYR LEU PRO TYR LYS VAL SEQRES 13 A 557 LEU PRO VAL GLY ASP GLU VAL VAL GLY ILE VAL GLY TYR SEQRES 14 A 557 THR SER LYS GLU THR PRO PHE LEU SER ASN PRO GLY THR SEQRES 15 A 557 ASN LEU VAL PHE GLU ASP GLU ILE THR ALA LEU GLN PRO SEQRES 16 A 557 GLU VAL ASP LYS LEU LYS THR LEU ASN VAL ASN LYS ILE SEQRES 17 A 557 ILE ALA LEU GLY HIS SER GLY PHE GLU MET ASP LYS LEU SEQRES 18 A 557 ILE ALA GLN LYS VAL ARG GLY VAL ASP VAL VAL VAL GLY SEQRES 19 A 557 GLY HIS SER ASN THR PHE LEU TYR THR GLY ASN PRO PRO SEQRES 20 A 557 SER LYS GLU VAL PRO ALA GLY LYS TYR PRO PHE ILE VAL SEQRES 21 A 557 THR SER ASP ASP GLY ARG LYS VAL PRO VAL VAL GLN ALA SEQRES 22 A 557 TYR ALA PHE GLY LYS TYR LEU GLY TYR LEU LYS ILE GLU SEQRES 23 A 557 PHE ASP GLU ARG GLY ASN VAL ILE SER SER HIS GLY ASN SEQRES 24 A 557 PRO ILE LEU LEU ASP SER SER ILE PRO GLU ASP PRO SER SEQRES 25 A 557 ILE LYS ALA ASP ILE ASN LYS TRP ARG ILE LYS LEU ASP SEQRES 26 A 557 ASP TYR SER THR GLN GLU LEU GLY LYS THR ILE VAL TYR SEQRES 27 A 557 LEU ASP GLY SER SER GLN SER CYS ARG PHE ARG GLU CYS SEQRES 28 A 557 ASN MET GLY ASN LEU ILE CYS ASP ALA MET ILE ASN ASN SEQRES 29 A 557 ASN LEU ARG HIS THR ASP GLU MET PHE TRP ASN HIS VAL SEQRES 30 A 557 SER MET CYS ILE LEU ASN GLY GLY GLY ILE ARG SER PRO SEQRES 31 A 557 ILE ASP GLU ARG ASN ASP GLY THR ILE THR TRP GLU ASN SEQRES 32 A 557 LEU ALA ALA VAL LEU PRO PHE GLY GLY THR PHE ASP LEU SEQRES 33 A 557 VAL GLN LEU LYS GLY SER THR LEU LYS LYS ALA PHE GLU SEQRES 34 A 557 HIS SER VAL HIS ARG TYR GLY GLN SER THR GLY GLU PHE SEQRES 35 A 557 LEU GLN VAL GLY GLY ILE HIS VAL VAL TYR ASP LEU SER SEQRES 36 A 557 ARG LYS PRO GLY ASP ARG VAL VAL LYS LEU ASP VAL LEU SEQRES 37 A 557 CYS THR LYS CYS ARG VAL PRO SER TYR ASP PRO LEU LYS SEQRES 38 A 557 MET ASP GLU VAL TYR LYS VAL ILE LEU PRO ASN PHE LEU SEQRES 39 A 557 ALA ASN GLY GLY ASP GLY PHE GLN MET ILE LYS ASP GLU SEQRES 40 A 557 LEU LEU ARG HIS ASP SER GLY ASP GLN ASP ILE ASN VAL SEQRES 41 A 557 VAL SER THR TYR ILE SER LYS MET LYS VAL ILE TYR PRO SEQRES 42 A 557 ALA VAL GLU GLY ARG ILE LYS PHE SER GLY GLY GLY GLY SEQRES 43 A 557 ALA GLY GLY GLY GLY HIS HIS HIS HIS HIS HIS HET ZN A 601 1 HET ZN A 602 1 HET CA A 603 1 HET O1T A 604 37 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM O1T [[(2~{R},3~{S},4~{R},5~{R})-5-[6-CHLORANYL-4-[[(1~{S})- HETNAM 2 O1T 1-(4-FLUOROPHENYL)ETHYL]AMINO]PYRAZOLO[3,4-B]PYRIDIN- HETNAM 3 O1T 1-YL]-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL- HETNAM 4 O1T PHOSPHORYL]METHYLPHOSPHONIC ACID FORMUL 2 ZN 2(ZN 2+) FORMUL 4 CA CA 2+ FORMUL 5 O1T C20 H24 CL F N4 O9 P2 FORMUL 6 HOH *218(H2 O) HELIX 1 AA1 ASP A 53 CYS A 57 5 5 HELIX 2 AA2 GLY A 59 GLU A 75 1 17 HELIX 3 AA3 THR A 90 LYS A 97 1 8 HELIX 4 AA4 GLY A 98 LEU A 108 1 11 HELIX 5 AA5 GLY A 116 ASP A 121 5 6 HELIX 6 AA6 VAL A 124 GLU A 129 1 6 HELIX 7 AA7 PRO A 149 SER A 155 1 7 HELIX 8 AA8 GLU A 180 SER A 185 1 6 HELIX 9 AA9 ASP A 195 LEU A 210 1 16 HELIX 10 AB1 GLY A 222 VAL A 233 1 12 HELIX 11 AB2 ASP A 317 ASP A 332 1 16 HELIX 12 AB3 ASP A 333 SER A 335 5 3 HELIX 13 AB4 SER A 349 ARG A 354 1 6 HELIX 14 AB5 CYS A 358 ASN A 372 1 15 HELIX 15 AB6 GLY A 392 ILE A 394 5 3 HELIX 16 AB7 THR A 407 LEU A 415 1 9 HELIX 17 AB8 GLY A 428 VAL A 439 1 12 HELIX 18 AB9 ASN A 499 ASN A 503 1 5 HELIX 19 AC1 GLY A 504 GLY A 507 5 4 HELIX 20 AC2 PHE A 508 LEU A 515 1 8 HELIX 21 AC3 GLN A 523 LYS A 536 1 14 SHEET 1 AA1 6 ILE A 139 LEU A 140 0 SHEET 2 AA1 6 ALA A 112 ALA A 114 1 N MET A 113 O LEU A 140 SHEET 3 AA1 6 VAL A 78 ASP A 82 1 N ASP A 82 O ALA A 114 SHEET 4 AA1 6 GLU A 28 THR A 34 1 N LEU A 32 O LEU A 79 SHEET 5 AA1 6 TYR A 286 PHE A 294 -1 O LEU A 290 N ILE A 31 SHEET 6 AA1 6 VAL A 300 GLY A 305 -1 O SER A 302 N GLU A 293 SHEET 1 AA2 6 ILE A 139 LEU A 140 0 SHEET 2 AA2 6 ALA A 112 ALA A 114 1 N MET A 113 O LEU A 140 SHEET 3 AA2 6 VAL A 78 ASP A 82 1 N ASP A 82 O ALA A 114 SHEET 4 AA2 6 GLU A 28 THR A 34 1 N LEU A 32 O LEU A 79 SHEET 5 AA2 6 TYR A 286 PHE A 294 -1 O LEU A 290 N ILE A 31 SHEET 6 AA2 6 ILE A 308 LEU A 309 -1 O ILE A 308 N LEU A 287 SHEET 1 AA3 2 ILE A 144 ALA A 146 0 SHEET 2 AA3 2 LEU A 191 PHE A 193 -1 O VAL A 192 N LYS A 145 SHEET 1 AA4 6 TYR A 161 VAL A 166 0 SHEET 2 AA4 6 GLU A 169 THR A 177 -1 O VAL A 171 N LEU A 164 SHEET 3 AA4 6 ILE A 215 HIS A 220 1 O LEU A 218 N VAL A 174 SHEET 4 AA4 6 VAL A 238 VAL A 240 1 O VAL A 240 N ALA A 217 SHEET 5 AA4 6 LYS A 274 VAL A 278 1 O VAL A 278 N VAL A 239 SHEET 6 AA4 6 PHE A 265 THR A 268 -1 N VAL A 267 O VAL A 275 SHEET 1 AA5 3 THR A 405 ILE A 406 0 SHEET 2 AA5 3 GLY A 340 THR A 342 -1 N GLY A 340 O ILE A 406 SHEET 3 AA5 3 VAL A 537 ILE A 538 1 O ILE A 538 N LYS A 341 SHEET 1 AA6 5 LEU A 450 GLY A 453 0 SHEET 2 AA6 5 MET A 386 ASN A 390 -1 N LEU A 389 O GLN A 451 SHEET 3 AA6 5 VAL A 492 PRO A 498 1 O ILE A 496 N ILE A 388 SHEET 4 AA6 5 PHE A 421 LYS A 427 -1 N LEU A 426 O TYR A 493 SHEET 5 AA6 5 HIS A 518 ASP A 519 -1 O ASP A 519 N LEU A 423 SHEET 1 AA7 4 TYR A 484 PRO A 486 0 SHEET 2 AA7 4 VAL A 469 LEU A 475 -1 N VAL A 474 O ASP A 485 SHEET 3 AA7 4 ILE A 455 TYR A 459 -1 N HIS A 456 O ASP A 473 SHEET 4 AA7 4 ILE A 546 PHE A 548 1 O LYS A 547 N VAL A 457 SSBOND 1 CYS A 51 CYS A 57 1555 1555 2.04 SSBOND 2 CYS A 353 CYS A 358 1555 1555 2.06 SSBOND 3 CYS A 365 CYS A 387 1555 1555 2.05 SSBOND 4 CYS A 476 CYS A 479 1555 1555 2.03 LINK OD1 ASP A 36 ZN ZN A 601 1555 1555 2.07 LINK NE2 HIS A 38 ZN ZN A 601 1555 1555 2.34 LINK OD2 ASP A 85 ZN ZN A 601 1555 1555 2.46 LINK OD2 ASP A 85 ZN ZN A 602 1555 1555 2.24 LINK OD1 ASN A 117 ZN ZN A 602 1555 1555 2.32 LINK O ASN A 213 CA CA A 603 1555 1555 2.30 LINK NE2 HIS A 220 ZN ZN A 602 1555 1555 2.15 LINK OD1 ASP A 237 CA CA A 603 1555 1555 2.49 LINK OD2 ASP A 237 CA CA A 603 1555 1555 2.62 LINK ND1 HIS A 243 ZN ZN A 602 1555 1555 2.13 LINK O GLY A 298 CA CA A 603 1555 1555 2.39 LINK ZN ZN A 601 O4 O1T A 604 1555 1555 2.10 LINK ZN ZN A 601 O HOH A 703 1555 1555 2.41 LINK ZN ZN A 602 O3 O1T A 604 1555 1555 2.07 LINK CA CA A 603 O HOH A 713 1555 1555 2.77 LINK CA CA A 603 O HOH A 890 1555 1555 2.63 CISPEP 1 TYR A 263 PRO A 264 0 -4.71 SITE 1 AC1 6 ASP A 36 HIS A 38 ASP A 85 ZN A 602 SITE 2 AC1 6 O1T A 604 HOH A 703 SITE 1 AC2 6 ASP A 85 ASN A 117 HIS A 220 HIS A 243 SITE 2 AC2 6 ZN A 601 O1T A 604 SITE 1 AC3 5 ASN A 213 ASP A 237 GLY A 298 HOH A 713 SITE 2 AC3 5 HOH A 890 SITE 1 AC4 27 HIS A 38 ASP A 85 GLN A 88 ASN A 117 SITE 2 AC4 27 HIS A 118 ASP A 121 LEU A 184 ASN A 186 SITE 3 AC4 27 HIS A 243 ASN A 245 ARG A 354 ASN A 390 SITE 4 AC4 27 GLY A 392 GLY A 393 ARG A 395 PHE A 417 SITE 5 AC4 27 GLY A 447 PHE A 500 ASP A 506 ZN A 601 SITE 6 AC4 27 ZN A 602 HOH A 703 HOH A 735 HOH A 753 SITE 7 AC4 27 HOH A 761 HOH A 794 HOH A 851 CRYST1 53.090 93.850 235.660 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018836 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010655 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004243 0.00000