HEADER HYDROLASE 21-JAN-20 6XUY TITLE HUMAN SIRT6 13-308 IN COMPLEX WITH ADP-RIBOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-6; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: REGULATORY PROTEIN SIR2 HOMOLOG 6,SIR2-LIKE PROTEIN 6; COMPND 5 EC: 2.3.1.286; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SIRT6, SIR2L6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2 (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET151-D-TOPO KEYWDS DEACYLASE, ACTIVATOR, ALLOSTERIC, ISOFORM-SELECTIVE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.YOU,C.STEEGBORN REVDAT 4 24-JAN-24 6XUY 1 REMARK REVDAT 3 05-MAY-21 6XUY 1 JRNL REVDAT 2 17-MAR-21 6XUY 1 JRNL REVDAT 1 28-OCT-20 6XUY 0 JRNL AUTH W.YOU,C.STEEGBORN JRNL TITL BINDING SITE FOR ACTIVATOR MDL-801 ON SIRT6. JRNL REF NAT.CHEM.BIOL. V. 17 519 2021 JRNL REFN ESSN 1552-4469 JRNL PMID 33649599 JRNL DOI 10.1038/S41589-021-00749-Y REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 35984 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1951 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.13 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2538 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 161 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4360 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 129 REMARK 3 SOLVENT ATOMS : 49 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -19.22000 REMARK 3 B22 (A**2) : -19.22000 REMARK 3 B33 (A**2) : 38.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.037 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.029 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.124 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4579 ; 0.015 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4305 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6226 ; 1.868 ; 1.655 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9967 ; 1.422 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 555 ; 7.132 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;33.143 ;19.876 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 764 ;16.261 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 49 ;21.481 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 590 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4992 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 961 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 15 297 B 15 297 8265 0.120 0.050 REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.391 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -K, -H, -L REMARK 3 TWIN FRACTION : 0.609 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6XUY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1292106352. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.7-6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37936 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.130 REMARK 200 RESOLUTION RANGE LOW (A) : 48.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 8.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3K35 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS PH 5.7, 1.6 M REMARK 280 (NH4)2SO4, AND 10% PEG 400, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 71.99850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 71.99850 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 71.99850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 7 REMARK 465 ILE A 8 REMARK 465 ASP A 9 REMARK 465 LYS A 170 REMARK 465 ALA A 171 REMARK 465 ARG A 172 REMARK 465 GLY A 173 REMARK 465 LEU A 174 REMARK 465 ARG A 175 REMARK 465 ALA A 176 REMARK 465 PRO A 299 REMARK 465 LYS A 300 REMARK 465 GLU A 301 REMARK 465 GLU A 302 REMARK 465 SER A 303 REMARK 465 PRO A 304 REMARK 465 THR A 305 REMARK 465 ARG A 306 REMARK 465 ILE A 307 REMARK 465 ASN A 308 REMARK 465 GLY B 7 REMARK 465 ILE B 8 REMARK 465 ASP B 9 REMARK 465 PRO B 10 REMARK 465 PHE B 11 REMARK 465 THR B 12 REMARK 465 ALA B 13 REMARK 465 ASP B 14 REMARK 465 LYS B 170 REMARK 465 ALA B 171 REMARK 465 ARG B 172 REMARK 465 GLY B 173 REMARK 465 LEU B 174 REMARK 465 ARG B 175 REMARK 465 ALA B 176 REMARK 465 PRO B 299 REMARK 465 LYS B 300 REMARK 465 GLU B 301 REMARK 465 GLU B 302 REMARK 465 SER B 303 REMARK 465 PRO B 304 REMARK 465 THR B 305 REMARK 465 ARG B 306 REMARK 465 ILE B 307 REMARK 465 ASN B 308 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 ARG B 231 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 272 CG CD OE1 OE2 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 141 SG REMARK 620 2 CYS A 144 SG 112.4 REMARK 620 3 CYS A 166 SG 112.6 98.5 REMARK 620 4 CYS A 177 SG 105.5 120.1 107.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 141 SG REMARK 620 2 CYS B 166 SG 121.7 REMARK 620 3 CYS B 177 SG 113.2 97.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AR6 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AR6 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 406 DBREF 6XUY A 13 308 UNP Q8N6T7 SIR6_HUMAN 13 308 DBREF 6XUY B 13 308 UNP Q8N6T7 SIR6_HUMAN 13 308 SEQADV 6XUY GLY A 7 UNP Q8N6T7 EXPRESSION TAG SEQADV 6XUY ILE A 8 UNP Q8N6T7 EXPRESSION TAG SEQADV 6XUY ASP A 9 UNP Q8N6T7 EXPRESSION TAG SEQADV 6XUY PRO A 10 UNP Q8N6T7 EXPRESSION TAG SEQADV 6XUY PHE A 11 UNP Q8N6T7 EXPRESSION TAG SEQADV 6XUY THR A 12 UNP Q8N6T7 EXPRESSION TAG SEQADV 6XUY GLY B 7 UNP Q8N6T7 EXPRESSION TAG SEQADV 6XUY ILE B 8 UNP Q8N6T7 EXPRESSION TAG SEQADV 6XUY ASP B 9 UNP Q8N6T7 EXPRESSION TAG SEQADV 6XUY PRO B 10 UNP Q8N6T7 EXPRESSION TAG SEQADV 6XUY PHE B 11 UNP Q8N6T7 EXPRESSION TAG SEQADV 6XUY THR B 12 UNP Q8N6T7 EXPRESSION TAG SEQRES 1 A 302 GLY ILE ASP PRO PHE THR ALA ASP LYS GLY LYS CYS GLY SEQRES 2 A 302 LEU PRO GLU ILE PHE ASP PRO PRO GLU GLU LEU GLU ARG SEQRES 3 A 302 LYS VAL TRP GLU LEU ALA ARG LEU VAL TRP GLN SER SER SEQRES 4 A 302 SER VAL VAL PHE HIS THR GLY ALA GLY ILE SER THR ALA SEQRES 5 A 302 SER GLY ILE PRO ASP PHE ARG GLY PRO HIS GLY VAL TRP SEQRES 6 A 302 THR MET GLU GLU ARG GLY LEU ALA PRO LYS PHE ASP THR SEQRES 7 A 302 THR PHE GLU SER ALA ARG PRO THR GLN THR HIS MET ALA SEQRES 8 A 302 LEU VAL GLN LEU GLU ARG VAL GLY LEU LEU ARG PHE LEU SEQRES 9 A 302 VAL SER GLN ASN VAL ASP GLY LEU HIS VAL ARG SER GLY SEQRES 10 A 302 PHE PRO ARG ASP LYS LEU ALA GLU LEU HIS GLY ASN MET SEQRES 11 A 302 PHE VAL GLU GLU CYS ALA LYS CYS LYS THR GLN TYR VAL SEQRES 12 A 302 ARG ASP THR VAL VAL GLY THR MET GLY LEU LYS ALA THR SEQRES 13 A 302 GLY ARG LEU CYS THR VAL ALA LYS ALA ARG GLY LEU ARG SEQRES 14 A 302 ALA CYS ARG GLY GLU LEU ARG ASP THR ILE LEU ASP TRP SEQRES 15 A 302 GLU ASP SER LEU PRO ASP ARG ASP LEU ALA LEU ALA ASP SEQRES 16 A 302 GLU ALA SER ARG ASN ALA ASP LEU SER ILE THR LEU GLY SEQRES 17 A 302 THR SER LEU GLN ILE ARG PRO SER GLY ASN LEU PRO LEU SEQRES 18 A 302 ALA THR LYS ARG ARG GLY GLY ARG LEU VAL ILE VAL ASN SEQRES 19 A 302 LEU GLN PRO THR LYS HIS ASP ARG HIS ALA ASP LEU ARG SEQRES 20 A 302 ILE HIS GLY TYR VAL ASP GLU VAL MET THR ARG LEU MET SEQRES 21 A 302 LYS HIS LEU GLY LEU GLU ILE PRO ALA TRP ASP GLY PRO SEQRES 22 A 302 ARG VAL LEU GLU ARG ALA LEU PRO PRO LEU PRO ARG PRO SEQRES 23 A 302 PRO THR PRO LYS LEU GLU PRO LYS GLU GLU SER PRO THR SEQRES 24 A 302 ARG ILE ASN SEQRES 1 B 302 GLY ILE ASP PRO PHE THR ALA ASP LYS GLY LYS CYS GLY SEQRES 2 B 302 LEU PRO GLU ILE PHE ASP PRO PRO GLU GLU LEU GLU ARG SEQRES 3 B 302 LYS VAL TRP GLU LEU ALA ARG LEU VAL TRP GLN SER SER SEQRES 4 B 302 SER VAL VAL PHE HIS THR GLY ALA GLY ILE SER THR ALA SEQRES 5 B 302 SER GLY ILE PRO ASP PHE ARG GLY PRO HIS GLY VAL TRP SEQRES 6 B 302 THR MET GLU GLU ARG GLY LEU ALA PRO LYS PHE ASP THR SEQRES 7 B 302 THR PHE GLU SER ALA ARG PRO THR GLN THR HIS MET ALA SEQRES 8 B 302 LEU VAL GLN LEU GLU ARG VAL GLY LEU LEU ARG PHE LEU SEQRES 9 B 302 VAL SER GLN ASN VAL ASP GLY LEU HIS VAL ARG SER GLY SEQRES 10 B 302 PHE PRO ARG ASP LYS LEU ALA GLU LEU HIS GLY ASN MET SEQRES 11 B 302 PHE VAL GLU GLU CYS ALA LYS CYS LYS THR GLN TYR VAL SEQRES 12 B 302 ARG ASP THR VAL VAL GLY THR MET GLY LEU LYS ALA THR SEQRES 13 B 302 GLY ARG LEU CYS THR VAL ALA LYS ALA ARG GLY LEU ARG SEQRES 14 B 302 ALA CYS ARG GLY GLU LEU ARG ASP THR ILE LEU ASP TRP SEQRES 15 B 302 GLU ASP SER LEU PRO ASP ARG ASP LEU ALA LEU ALA ASP SEQRES 16 B 302 GLU ALA SER ARG ASN ALA ASP LEU SER ILE THR LEU GLY SEQRES 17 B 302 THR SER LEU GLN ILE ARG PRO SER GLY ASN LEU PRO LEU SEQRES 18 B 302 ALA THR LYS ARG ARG GLY GLY ARG LEU VAL ILE VAL ASN SEQRES 19 B 302 LEU GLN PRO THR LYS HIS ASP ARG HIS ALA ASP LEU ARG SEQRES 20 B 302 ILE HIS GLY TYR VAL ASP GLU VAL MET THR ARG LEU MET SEQRES 21 B 302 LYS HIS LEU GLY LEU GLU ILE PRO ALA TRP ASP GLY PRO SEQRES 22 B 302 ARG VAL LEU GLU ARG ALA LEU PRO PRO LEU PRO ARG PRO SEQRES 23 B 302 PRO THR PRO LYS LEU GLU PRO LYS GLU GLU SER PRO THR SEQRES 24 B 302 ARG ILE ASN HET AR6 A 401 36 HET ZN A 402 1 HET PGE A 403 10 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET SO4 A 407 5 HET SO4 A 408 5 HET AR6 B 401 36 HET ZN B 402 1 HET SO4 B 403 5 HET SO4 B 404 5 HET SO4 B 405 5 HET SO4 B 406 5 HETNAM AR6 [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY- HETNAM 2 AR6 OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5- HETNAM 3 AR6 TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN HETNAM 4 AR6 PHOSPHATE HETNAM ZN ZINC ION HETNAM PGE TRIETHYLENE GLYCOL HETNAM SO4 SULFATE ION HETSYN AR6 ADENOSINE-5-DIPHOSPHORIBOSE FORMUL 3 AR6 2(C15 H23 N5 O14 P2) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 PGE C6 H14 O4 FORMUL 6 SO4 9(O4 S 2-) FORMUL 17 HOH *49(H2 O) HELIX 1 AA1 PRO A 26 SER A 44 1 19 HELIX 2 AA2 ALA A 53 GLY A 60 5 8 HELIX 3 AA3 GLY A 69 ARG A 76 1 8 HELIX 4 AA4 THR A 92 VAL A 104 1 13 HELIX 5 AA5 GLY A 117 GLY A 123 1 7 HELIX 6 AA6 PRO A 125 ASP A 127 5 3 HELIX 7 AA7 PRO A 193 ALA A 207 1 15 HELIX 8 AA8 PRO A 221 GLY A 223 5 3 HELIX 9 AA9 ASN A 224 ARG A 231 1 8 HELIX 10 AB1 HIS A 246 ALA A 250 5 5 HELIX 11 AB2 TYR A 257 GLY A 270 1 14 HELIX 12 AB3 PRO B 26 SER B 44 1 19 HELIX 13 AB4 ALA B 53 GLY B 60 5 8 HELIX 14 AB5 GLY B 69 ARG B 76 1 8 HELIX 15 AB6 THR B 92 VAL B 104 1 13 HELIX 16 AB7 GLY B 117 SER B 122 1 6 HELIX 17 AB8 PRO B 125 ASP B 127 5 3 HELIX 18 AB9 PRO B 193 ALA B 207 1 15 HELIX 19 AC1 PRO B 221 GLY B 223 5 3 HELIX 20 AC2 ASN B 224 ARG B 231 1 8 HELIX 21 AC3 HIS B 246 ALA B 250 5 5 HELIX 22 AC4 TYR B 257 GLY B 270 1 14 SHEET 1 AA1 6 LEU A 129 GLU A 131 0 SHEET 2 AA1 6 PHE A 109 SER A 112 1 N SER A 112 O ALA A 130 SHEET 3 AA1 6 VAL A 47 THR A 51 1 N PHE A 49 O VAL A 111 SHEET 4 AA1 6 LEU A 209 LEU A 213 1 O LEU A 213 N HIS A 50 SHEET 5 AA1 6 ARG A 235 VAL A 239 1 O VAL A 239 N THR A 212 SHEET 6 AA1 6 LEU A 252 ILE A 254 1 O ILE A 254 N ILE A 238 SHEET 1 AA2 4 GLN A 147 VAL A 149 0 SHEET 2 AA2 4 VAL A 138 CYS A 141 -1 N GLU A 139 O TYR A 148 SHEET 3 AA2 4 GLU A 180 ASP A 183 -1 O ARG A 182 N GLU A 140 SHEET 4 AA2 4 ALA A 161 LEU A 165 -1 N ARG A 164 O LEU A 181 SHEET 1 AA3 6 LEU B 129 GLU B 131 0 SHEET 2 AA3 6 PHE B 109 SER B 112 1 N SER B 112 O ALA B 130 SHEET 3 AA3 6 VAL B 47 THR B 51 1 N PHE B 49 O VAL B 111 SHEET 4 AA3 6 LEU B 209 LEU B 213 1 O LEU B 209 N VAL B 48 SHEET 5 AA3 6 ARG B 235 VAL B 239 1 O VAL B 237 N SER B 210 SHEET 6 AA3 6 LEU B 252 ILE B 254 1 O ILE B 254 N ILE B 238 SHEET 1 AA4 4 GLN B 147 VAL B 149 0 SHEET 2 AA4 4 VAL B 138 CYS B 141 -1 N GLU B 139 O TYR B 148 SHEET 3 AA4 4 GLU B 180 ASP B 183 -1 O ARG B 182 N GLU B 140 SHEET 4 AA4 4 ALA B 161 LEU B 165 -1 N ARG B 164 O LEU B 181 LINK SG CYS A 141 ZN ZN A 402 1555 1555 2.21 LINK SG CYS A 144 ZN ZN A 402 1555 1555 2.22 LINK SG CYS A 166 ZN ZN A 402 1555 1555 2.26 LINK SG CYS A 177 ZN ZN A 402 1555 1555 2.34 LINK SG CYS B 141 ZN ZN B 402 1555 1555 2.05 LINK SG CYS B 166 ZN ZN B 402 1555 1555 2.21 LINK SG CYS B 177 ZN ZN B 402 1555 1555 2.45 CISPEP 1 ARG A 220 PRO A 221 0 3.32 CISPEP 2 ARG B 220 PRO B 221 0 2.60 SITE 1 AC1 22 GLY A 52 ALA A 53 GLY A 54 THR A 57 SITE 2 AC1 22 ASP A 63 PHE A 64 ARG A 65 TRP A 71 SITE 3 AC1 22 GLN A 113 HIS A 133 GLY A 214 THR A 215 SITE 4 AC1 22 SER A 216 ILE A 219 ASN A 240 LEU A 241 SITE 5 AC1 22 GLN A 242 GLY A 256 TYR A 257 VAL A 258 SITE 6 AC1 22 HOH A 501 ASP B 83 SITE 1 AC2 4 CYS A 141 CYS A 144 CYS A 166 CYS A 177 SITE 1 AC3 5 LEU A 186 ASP A 187 ASP A 190 LEU A 192 SITE 2 AC3 5 ARG A 220 SITE 1 AC4 5 VAL A 154 GLY A 155 THR A 162 ARG A 164 SITE 2 AC4 5 LYS A 296 SITE 1 AC5 3 LYS A 33 ARG A 253 HIS A 255 SITE 1 AC6 2 ARG A 205 ARG B 205 SITE 1 AC7 3 ARG A 220 PRO A 221 ASN A 224 SITE 1 AC8 7 ARG A 90 ALA A 275 TRP A 276 HOH A 503 SITE 2 AC8 7 ARG B 90 ALA B 275 TRP B 276 SITE 1 AC9 21 ASP A 83 GLY B 52 ALA B 53 GLY B 54 SITE 2 AC9 21 THR B 57 ASP B 63 PHE B 64 ARG B 65 SITE 3 AC9 21 TRP B 71 GLN B 113 HIS B 133 GLY B 214 SITE 4 AC9 21 THR B 215 SER B 216 ILE B 219 ASN B 240 SITE 5 AC9 21 LEU B 241 GLN B 242 GLY B 256 TYR B 257 SITE 6 AC9 21 VAL B 258 SITE 1 AD1 4 CYS B 141 CYS B 144 CYS B 166 CYS B 177 SITE 1 AD2 5 HIS A 68 LYS A 81 ASP A 83 HIS B 68 SITE 2 AD2 5 HOH B 501 SITE 1 AD3 2 LYS B 33 ARG B 253 SITE 1 AD4 5 VAL B 154 GLY B 155 THR B 162 ARG B 164 SITE 2 AD4 5 LYS B 296 SITE 1 AD5 3 ARG B 220 PRO B 221 ASN B 224 CRYST1 91.192 91.192 143.997 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010966 0.006331 0.000000 0.00000 SCALE2 0.000000 0.012662 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006945 0.00000