HEADER TRANSFERASE 28-JAN-20 6XXQ TITLE CRYSTAL STRUCTURE OF SPECTINOMYCIN ADENYLTRANSFERASE AAD(9) FROM TITLE 2 ENTEROCOCCUS FAECIALIS WITH ATP AND SPECTINOMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: STREPTOMYCIN 3''-ADENYLYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AAD(9); COMPND 5 EC: 2.7.7.47; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 1351; SOURCE 4 GENE: SPC, AAD9; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NUCLEOTIDYLTRANSFERASE, ANTIBIOTIC RESISTANCE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.KANCHUGAL P,M.SELMER REVDAT 3 24-JAN-24 6XXQ 1 LINK REVDAT 2 10-JUN-20 6XXQ 1 JRNL HETSYN REVDAT 1 15-APR-20 6XXQ 0 JRNL AUTH S.KANCHUGAL P,M.SELMER JRNL TITL STRUCTURAL RECOGNITION OF SPECTINOMYCIN BY RESISTANCE ENZYME JRNL TITL 2 ANT(9) FROM ENTEROCOCCUS FAECALIS. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 64 2020 JRNL REFN ESSN 1098-6596 JRNL PMID 32253216 JRNL DOI 10.1128/AAC.00371-20 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12341 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 623 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.8900 - 4.7600 1.00 2967 175 0.2044 0.2404 REMARK 3 2 4.7600 - 3.7800 1.00 2899 194 0.2162 0.2609 REMARK 3 3 3.7800 - 3.3000 1.00 2958 128 0.2743 0.2886 REMARK 3 4 3.3000 - 3.0000 1.00 2894 126 0.3125 0.3816 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.452 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.803 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4248 REMARK 3 ANGLE : 0.512 5766 REMARK 3 CHIRALITY : 0.038 658 REMARK 3 PLANARITY : 0.003 750 REMARK 3 DIHEDRAL : 2.566 2650 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XXQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JAN-20. REMARK 100 THE DEPOSITION ID IS D_1292106489. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 1.15.2_3472, XDS REMARK 200 1.15.2_3472, XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 1.15.2_3472 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12346 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 55.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6SXJ REMARK 200 REMARK 200 REMARK: LONG HEXAGONAL PRISM-SHAPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% W/V PEG 4000, 20% V/V GLYCEROL, REMARK 280 0.02 M OF EACH MONOSACCHARIDE (0.2 M D-GLUCOSE, 0.2 M D-MANNOSE, REMARK 280 0.2 M D-GALACTOSE, 0.2 M L-FUCOSE, 0.2 M D-XYLOSE, 0.2 M N- REMARK 280 ACETYL-D-GLUCOSAMINE), 0.1 M MOPS/HEPES-NA PH 7.5 AND SOAKED REMARK 280 WITH 10 MM ATP, 10 MM MGCL2 AND PINCH OF SPECTINOMYCIN POWDER, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 66.76600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.65600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 66.76600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.65600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 ARG A 3 REMARK 465 ILE A 4 REMARK 465 TYR A 5 REMARK 465 LEU A 6 REMARK 465 LEU A 255 REMARK 465 LYS A 256 REMARK 465 GLY A 257 REMARK 465 HIS A 258 REMARK 465 HIS A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 HIS A 262 REMARK 465 HIS A 263 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 ARG B 3 REMARK 465 ILE B 4 REMARK 465 TYR B 5 REMARK 465 LEU B 6 REMARK 465 LEU B 255 REMARK 465 LYS B 256 REMARK 465 GLY B 257 REMARK 465 HIS B 258 REMARK 465 HIS B 259 REMARK 465 HIS B 260 REMARK 465 HIS B 261 REMARK 465 HIS B 262 REMARK 465 HIS B 263 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 22 -35.65 -134.58 REMARK 500 LYS A 24 -136.79 60.30 REMARK 500 PHE A 33 -158.83 -124.87 REMARK 500 GLU A 38 -83.34 -102.40 REMARK 500 SER A 39 -158.40 -73.89 REMARK 500 ASN A 176 27.99 -149.74 REMARK 500 ASP A 180 38.05 -158.28 REMARK 500 LEU A 230 -142.80 -90.51 REMARK 500 ASN A 233 74.92 -110.80 REMARK 500 ASN A 240 77.50 55.35 REMARK 500 LYS B 24 -136.88 38.10 REMARK 500 PHE B 33 -157.07 -100.94 REMARK 500 PRO B 122 105.42 -59.05 REMARK 500 ASP B 179 11.30 57.89 REMARK 500 GLU B 217 -71.58 -42.55 REMARK 500 ASN B 240 73.41 61.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 46 O REMARK 620 2 ASP A 46 OD1 70.8 REMARK 620 3 ASP A 48 OD2 119.8 84.4 REMARK 620 4 ATP A 304 O3G 105.2 65.7 112.9 REMARK 620 5 ATP A 304 O2B 164.6 112.4 75.6 64.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 46 OD2 REMARK 620 2 ATP A 304 O2A 72.7 REMARK 620 3 ATP A 304 O1A 128.2 57.7 REMARK 620 4 SCM A 305 O2B 113.7 134.0 92.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 46 OD1 REMARK 620 2 ASP B 48 OD2 99.9 REMARK 620 3 ATP B 303 O2G 74.1 142.9 REMARK 620 4 ATP B 303 O2B 133.6 88.2 72.5 REMARK 620 5 ATP B 303 O2A 75.6 62.5 80.8 68.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCM A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCM B 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6SXJ RELATED DB: PDB DBREF 6XXQ A 1 255 UNP Q07448 S3AD_ENTFL 1 255 DBREF 6XXQ B 1 255 UNP Q07448 S3AD_ENTFL 1 255 SEQADV 6XXQ LYS A 256 UNP Q07448 EXPRESSION TAG SEQADV 6XXQ GLY A 257 UNP Q07448 EXPRESSION TAG SEQADV 6XXQ HIS A 258 UNP Q07448 EXPRESSION TAG SEQADV 6XXQ HIS A 259 UNP Q07448 EXPRESSION TAG SEQADV 6XXQ HIS A 260 UNP Q07448 EXPRESSION TAG SEQADV 6XXQ HIS A 261 UNP Q07448 EXPRESSION TAG SEQADV 6XXQ HIS A 262 UNP Q07448 EXPRESSION TAG SEQADV 6XXQ HIS A 263 UNP Q07448 EXPRESSION TAG SEQADV 6XXQ LYS B 256 UNP Q07448 EXPRESSION TAG SEQADV 6XXQ GLY B 257 UNP Q07448 EXPRESSION TAG SEQADV 6XXQ HIS B 258 UNP Q07448 EXPRESSION TAG SEQADV 6XXQ HIS B 259 UNP Q07448 EXPRESSION TAG SEQADV 6XXQ HIS B 260 UNP Q07448 EXPRESSION TAG SEQADV 6XXQ HIS B 261 UNP Q07448 EXPRESSION TAG SEQADV 6XXQ HIS B 262 UNP Q07448 EXPRESSION TAG SEQADV 6XXQ HIS B 263 UNP Q07448 EXPRESSION TAG SEQRES 1 A 263 MET ARG ARG ILE TYR LEU ASN THR TYR GLU GLN ILE ASN SEQRES 2 A 263 LYS VAL LYS LYS ILE LEU ARG LYS HIS LEU LYS ASN ASN SEQRES 3 A 263 LEU ILE GLY THR TYR MET PHE GLY SER GLY VAL GLU SER SEQRES 4 A 263 GLY LEU LYS PRO ASN SER ASP LEU ASP PHE LEU VAL VAL SEQRES 5 A 263 VAL SER GLU PRO LEU THR ASP GLN SER LYS GLU ILE LEU SEQRES 6 A 263 ILE GLN LYS ILE ARG PRO ILE SER LYS LYS ILE GLY ASP SEQRES 7 A 263 LYS SER ASN LEU ARG TYR ILE GLU LEU THR ILE ILE ILE SEQRES 8 A 263 GLN GLN GLU MET VAL PRO TRP ASN HIS PRO PRO LYS GLN SEQRES 9 A 263 GLU PHE ILE TYR GLY GLU TRP LEU GLN GLU LEU TYR GLU SEQRES 10 A 263 GLN GLY TYR ILE PRO GLN LYS GLU LEU ASN SER ASP LEU SEQRES 11 A 263 THR ILE MET LEU TYR GLN ALA LYS ARG LYS ASN LYS ARG SEQRES 12 A 263 ILE TYR GLY ASN TYR ASP LEU GLU GLU LEU LEU PRO ASP SEQRES 13 A 263 ILE PRO PHE SER ASP VAL ARG ARG ALA ILE MET ASP SER SEQRES 14 A 263 SER GLU GLU LEU ILE ASP ASN TYR GLN ASP ASP GLU THR SEQRES 15 A 263 ASN SER ILE LEU THR LEU CYS ARG MET ILE LEU THR MET SEQRES 16 A 263 ASP THR GLY LYS ILE ILE PRO LYS ASP ILE ALA GLY ASN SEQRES 17 A 263 ALA VAL ALA GLU SER SER PRO LEU GLU HIS ARG GLU ARG SEQRES 18 A 263 ILE LEU LEU ALA VAL ARG SER TYR LEU GLY GLU ASN ILE SEQRES 19 A 263 GLU TRP THR ASN GLU ASN VAL ASN LEU THR ILE ASN TYR SEQRES 20 A 263 LEU ASN ASN ARG LEU LYS LYS LEU LYS GLY HIS HIS HIS SEQRES 21 A 263 HIS HIS HIS SEQRES 1 B 263 MET ARG ARG ILE TYR LEU ASN THR TYR GLU GLN ILE ASN SEQRES 2 B 263 LYS VAL LYS LYS ILE LEU ARG LYS HIS LEU LYS ASN ASN SEQRES 3 B 263 LEU ILE GLY THR TYR MET PHE GLY SER GLY VAL GLU SER SEQRES 4 B 263 GLY LEU LYS PRO ASN SER ASP LEU ASP PHE LEU VAL VAL SEQRES 5 B 263 VAL SER GLU PRO LEU THR ASP GLN SER LYS GLU ILE LEU SEQRES 6 B 263 ILE GLN LYS ILE ARG PRO ILE SER LYS LYS ILE GLY ASP SEQRES 7 B 263 LYS SER ASN LEU ARG TYR ILE GLU LEU THR ILE ILE ILE SEQRES 8 B 263 GLN GLN GLU MET VAL PRO TRP ASN HIS PRO PRO LYS GLN SEQRES 9 B 263 GLU PHE ILE TYR GLY GLU TRP LEU GLN GLU LEU TYR GLU SEQRES 10 B 263 GLN GLY TYR ILE PRO GLN LYS GLU LEU ASN SER ASP LEU SEQRES 11 B 263 THR ILE MET LEU TYR GLN ALA LYS ARG LYS ASN LYS ARG SEQRES 12 B 263 ILE TYR GLY ASN TYR ASP LEU GLU GLU LEU LEU PRO ASP SEQRES 13 B 263 ILE PRO PHE SER ASP VAL ARG ARG ALA ILE MET ASP SER SEQRES 14 B 263 SER GLU GLU LEU ILE ASP ASN TYR GLN ASP ASP GLU THR SEQRES 15 B 263 ASN SER ILE LEU THR LEU CYS ARG MET ILE LEU THR MET SEQRES 16 B 263 ASP THR GLY LYS ILE ILE PRO LYS ASP ILE ALA GLY ASN SEQRES 17 B 263 ALA VAL ALA GLU SER SER PRO LEU GLU HIS ARG GLU ARG SEQRES 18 B 263 ILE LEU LEU ALA VAL ARG SER TYR LEU GLY GLU ASN ILE SEQRES 19 B 263 GLU TRP THR ASN GLU ASN VAL ASN LEU THR ILE ASN TYR SEQRES 20 B 263 LEU ASN ASN ARG LEU LYS LYS LEU LYS GLY HIS HIS HIS SEQRES 21 B 263 HIS HIS HIS HET NA A 301 1 HET MG A 302 1 HET MG A 303 1 HET ATP A 304 31 HET SCM A 305 23 HET NA B 301 1 HET MG B 302 1 HET ATP B 303 31 HET SCM B 304 23 HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM SCM SPECTINOMYCIN HETSYN SCM ACTINOSPECTACIN; ESPECTINOMICINA; CHX-3101 FORMUL 3 NA 2(NA 1+) FORMUL 4 MG 3(MG 2+) FORMUL 6 ATP 2(C10 H16 N5 O13 P3) FORMUL 7 SCM 2(C14 H24 N2 O7) FORMUL 12 HOH *12(H2 O) HELIX 1 AA1 ASN A 7 LYS A 24 1 18 HELIX 2 AA2 GLY A 34 VAL A 37 5 4 HELIX 3 AA3 THR A 58 ARG A 70 1 13 HELIX 4 AA4 PRO A 71 SER A 73 5 3 HELIX 5 AA5 GLN A 93 VAL A 96 5 4 HELIX 6 AA6 GLY A 109 TRP A 111 5 3 HELIX 7 AA7 LEU A 112 GLU A 117 1 6 HELIX 8 AA8 SER A 128 LYS A 140 1 13 HELIX 9 AA9 ASP A 149 LEU A 154 1 6 HELIX 10 AB1 PRO A 158 ASP A 175 1 18 HELIX 11 AB2 ASP A 180 GLY A 198 1 19 HELIX 12 AB3 PRO A 202 GLU A 212 1 11 HELIX 13 AB4 PRO A 215 LEU A 230 1 16 HELIX 14 AB5 VAL A 241 LYS A 254 1 14 HELIX 15 AB6 THR B 8 LYS B 24 1 17 HELIX 16 AB7 GLY B 34 VAL B 37 5 4 HELIX 17 AB8 THR B 58 ARG B 70 1 13 HELIX 18 AB9 PRO B 71 SER B 73 5 3 HELIX 19 AC1 GLN B 93 VAL B 96 5 4 HELIX 20 AC2 GLY B 109 TRP B 111 5 3 HELIX 21 AC3 LEU B 112 GLU B 117 1 6 HELIX 22 AC4 SER B 128 LYS B 140 1 13 HELIX 23 AC5 ASP B 149 LEU B 153 5 5 HELIX 24 AC6 PRO B 158 ILE B 174 1 17 HELIX 25 AC7 ASP B 180 GLY B 198 1 19 HELIX 26 AC8 PRO B 202 SER B 213 1 12 HELIX 27 AC9 PRO B 215 GLY B 231 1 17 HELIX 28 AD1 ASN B 240 LYS B 253 1 14 SHEET 1 AA1 5 PHE A 106 TYR A 108 0 SHEET 2 AA1 5 TYR A 84 ILE A 91 -1 N LEU A 87 O TYR A 108 SHEET 3 AA1 5 ASP A 46 VAL A 53 1 N VAL A 51 O THR A 88 SHEET 4 AA1 5 LEU A 27 PHE A 33 -1 N TYR A 31 O LEU A 50 SHEET 5 AA1 5 LYS A 142 GLY A 146 -1 O TYR A 145 N THR A 30 SHEET 1 AA2 2 LYS A 103 GLN A 104 0 SHEET 2 AA2 2 GLU A 125 LEU A 126 -1 O GLU A 125 N GLN A 104 SHEET 1 AA3 5 PHE B 106 TYR B 108 0 SHEET 2 AA3 5 TYR B 84 ILE B 91 -1 N LEU B 87 O TYR B 108 SHEET 3 AA3 5 ASP B 46 VAL B 53 1 N VAL B 51 O ILE B 90 SHEET 4 AA3 5 LEU B 27 MET B 32 -1 N TYR B 31 O LEU B 50 SHEET 5 AA3 5 LYS B 142 GLY B 146 -1 O ILE B 144 N THR B 30 SHEET 1 AA4 2 LYS B 103 GLN B 104 0 SHEET 2 AA4 2 GLU B 125 LEU B 126 -1 O GLU B 125 N GLN B 104 LINK O ASP A 46 MG MG A 302 1555 1555 2.89 LINK OD1 ASP A 46 MG MG A 302 1555 1555 2.06 LINK OD2 ASP A 46 MG MG A 303 1555 1555 2.42 LINK OD2 ASP A 48 MG MG A 302 1555 1555 2.70 LINK MG MG A 302 O3G ATP A 304 1555 1555 2.61 LINK MG MG A 302 O2B ATP A 304 1555 1555 2.29 LINK MG MG A 303 O2A ATP A 304 1555 1555 2.85 LINK MG MG A 303 O1A ATP A 304 1555 1555 2.34 LINK MG MG A 303 O2B SCM A 305 1555 1555 2.47 LINK OD1 ASP B 46 MG MG B 302 1555 1555 1.94 LINK OD2 ASP B 48 MG MG B 302 1555 1555 2.22 LINK MG MG B 302 O2G ATP B 303 1555 1555 2.32 LINK MG MG B 302 O2B ATP B 303 1555 1555 2.07 LINK MG MG B 302 O2A ATP B 303 1555 1555 2.56 CISPEP 1 VAL A 96 PRO A 97 0 -2.20 CISPEP 2 HIS A 100 PRO A 101 0 -1.23 CISPEP 3 VAL B 96 PRO B 97 0 -6.81 CISPEP 4 HIS B 100 PRO B 101 0 0.59 SITE 1 AC1 5 SER A 35 SER A 45 ASP A 46 ASP A 48 SITE 2 AC1 5 ATP A 304 SITE 1 AC2 3 ASP A 46 ATP A 304 SCM A 305 SITE 1 AC3 17 GLY A 34 SER A 35 SER A 45 ASP A 46 SITE 2 AC3 17 ASP A 48 ASP A 129 ILE A 132 MET A 133 SITE 3 AC3 17 THR A 187 ARG A 190 MET A 191 THR A 194 SITE 4 AC3 17 LYS A 203 TYR A 229 MG A 302 MG A 303 SITE 5 AC3 17 SCM A 305 SITE 1 AC4 8 TYR A 84 GLU A 86 TRP A 111 ASP A 129 SITE 2 AC4 8 ASP A 180 ASN A 183 MG A 303 ATP A 304 SITE 1 AC5 4 SER B 35 ASP B 46 ASP B 48 ATP B 303 SITE 1 AC6 18 GLY B 34 SER B 35 SER B 45 ASP B 46 SITE 2 AC6 18 ASP B 48 ASP B 129 ILE B 132 MET B 133 SITE 3 AC6 18 GLN B 136 THR B 187 ARG B 190 MET B 191 SITE 4 AC6 18 THR B 194 ILE B 200 LYS B 203 TYR B 229 SITE 5 AC6 18 MG B 302 SCM B 304 SITE 1 AC7 7 ASP B 46 GLU B 86 TRP B 111 MET B 133 SITE 2 AC7 7 ASP B 180 ASN B 183 ATP B 303 CRYST1 133.532 69.312 94.517 90.00 135.00 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007489 0.000000 0.007489 0.00000 SCALE2 0.000000 0.014428 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014963 0.00000