HEADER LIGASE 31-JAN-20 6XZ1 TITLE CONJUGATE OF THE HECT DOMAIN OF HUWE1 WITH UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HECT, UBA AND WWE DOMAIN CONTAINING 1, ISOFORM CRA_A; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: POLYUBIQUITIN-B; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HUWE1, HCG_2000770; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: LOBSTR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSKB2; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: UBB; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PTXB1 KEYWDS UBIQUITIN LIGASE, E3 ENZYME, UBIQUITIN-PROPARGYLAMIDE, ACTIVITY-BASED KEYWDS 2 PROBE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR B.LIU,A.SEENIVASAN,R.NAIR,D.CHEN,E.D.LOWE,S.LORENZ REVDAT 4 24-JAN-24 6XZ1 1 REMARK REVDAT 3 13-OCT-21 6XZ1 1 JRNL REVDAT 2 06-OCT-21 6XZ1 1 AUTHOR JRNL REVDAT 1 25-AUG-21 6XZ1 0 JRNL AUTH R.M.NAIR,A.SEENIVASAN,B.LIU,D.CHEN,E.D.LOWE,S.LORENZ JRNL TITL RECONSTITUTION AND STRUCTURAL ANALYSIS OF A HECT JRNL TITL 2 LIGASE-UBIQUITIN COMPLEX VIA AN ACTIVITY-BASED PROBE. JRNL REF ACS CHEM.BIOL. V. 16 1615 2021 JRNL REFN ESSN 1554-8937 JRNL PMID 34403242 JRNL DOI 10.1021/ACSCHEMBIO.1C00433 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 135622 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.550 REMARK 3 FREE R VALUE TEST SET COUNT : 3464 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 6.7240 - 5.3373 0.99 5298 138 0.1871 0.1929 REMARK 3 2 5.3373 - 4.6627 0.99 5328 128 0.1605 0.1703 REMARK 3 3 4.6627 - 4.2365 1.00 5341 149 0.1470 0.1837 REMARK 3 4 4.2365 - 3.9328 1.00 5308 144 0.1625 0.2149 REMARK 3 5 3.9328 - 3.7009 0.99 5249 136 0.1807 0.2298 REMARK 3 6 3.7009 - 3.5156 0.99 5321 141 0.1893 0.1905 REMARK 3 7 3.5156 - 3.3626 0.99 5332 146 0.2058 0.2120 REMARK 3 8 3.3626 - 3.2331 0.99 5277 145 0.2470 0.3763 REMARK 3 9 3.2331 - 3.1215 1.00 5322 132 0.2550 0.3313 REMARK 3 10 3.1215 - 3.0239 0.99 5348 130 0.2648 0.3231 REMARK 3 11 3.0239 - 2.9375 0.99 5255 141 0.2700 0.2074 REMARK 3 12 2.9375 - 2.8602 0.98 5316 138 0.2946 0.3586 REMARK 3 13 2.8602 - 2.7904 0.98 5224 146 0.3171 0.3926 REMARK 3 14 2.7904 - 2.7269 0.99 5298 114 0.3264 0.3162 REMARK 3 15 2.7269 - 2.6689 0.99 5277 150 0.3395 0.3438 REMARK 3 16 2.6689 - 2.6155 0.99 5341 128 0.3435 0.3303 REMARK 3 17 2.6155 - 2.5662 0.99 5330 138 0.3476 0.3711 REMARK 3 18 2.5662 - 2.5203 0.99 5275 152 0.3622 0.3770 REMARK 3 19 2.5203 - 2.4776 0.99 5302 102 0.3723 0.4073 REMARK 3 20 2.4776 - 2.4376 0.99 5270 147 0.3791 0.4174 REMARK 3 21 2.4376 - 2.4001 0.99 5369 167 0.3928 0.4261 REMARK 3 22 2.4001 - 2.3648 0.98 5225 115 0.4152 0.4216 REMARK 3 23 2.3648 - 2.3315 0.97 5170 139 0.4283 0.4424 REMARK 3 24 2.3315 - 2.3000 0.97 5200 152 0.4312 0.4652 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6XZ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292106564. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976300 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : X-RAY REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 135622 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 79.752 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.16900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1UBQ, 3H1D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.65 M SODIUM PHOSPHATE MONOBASIC, REMARK 280 POTASSIUM PHOSPHATE DIBASIC, 0.1 M HEPES PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 70.27600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 71.08550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 70.27600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 71.08550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A3993 CG OD1 OD2 REMARK 470 ARG A4007 CZ NH1 NH2 REMARK 470 ARG A4013 CG CD NE CZ NH1 NH2 REMARK 470 GLU A4028 CG CD OE1 OE2 REMARK 470 GLU A4040 CG CD OE1 OE2 REMARK 470 MET A4077 CG SD CE REMARK 470 ASP A4087 CG OD1 OD2 REMARK 470 ARG A4088 CG CD NE CZ NH1 NH2 REMARK 470 ARG A4142 CZ NH1 NH2 REMARK 470 GLU A4177 CD OE1 OE2 REMARK 470 GLN A4179 CG CD OE1 NE2 REMARK 470 GLU A4180 CG CD OE1 OE2 REMARK 470 PHE A4181 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A4185 CD OE1 OE2 REMARK 470 ARG A4187 CD NE CZ NH1 NH2 REMARK 470 GLU A4200 CD OE1 OE2 REMARK 470 GLU A4201 CG CD OE1 OE2 REMARK 470 ARG A4214 CZ NH1 NH2 REMARK 470 ARG A4220 NE CZ NH1 NH2 REMARK 470 LYS A4270 CE NZ REMARK 470 ASN A4318 CG OD1 ND2 REMARK 470 GLU C 16 CG CD OE1 OE2 REMARK 470 LYS C 33 CE NZ REMARK 470 GLU C 34 CG CD OE1 OE2 REMARK 470 LYS C 48 CD CE NZ REMARK 470 GLU C 51 CG CD OE1 OE2 REMARK 470 GLN C 62 CD OE1 NE2 REMARK 470 LYS C 63 CG CD CE NZ REMARK 470 GLU C 64 CG CD OE1 OE2 REMARK 470 ASP B3993 OD1 OD2 REMARK 470 ARG B4013 CG CD NE CZ NH1 NH2 REMARK 470 GLU B4028 CD OE1 OE2 REMARK 470 ARG B4036 CD NE CZ NH1 NH2 REMARK 470 MET B4077 CG SD CE REMARK 470 ASP B4087 CG OD1 OD2 REMARK 470 ARG B4088 CG CD NE CZ NH1 NH2 REMARK 470 HIS B4152 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B4201 CG CD OE1 OE2 REMARK 470 ARG B4237 NE CZ NH1 NH2 REMARK 470 ASN B4274 OD1 ND2 REMARK 470 ASN B4318 CG OD1 ND2 REMARK 470 GLU D 16 CG CD OE1 OE2 REMARK 470 LYS D 33 CE NZ REMARK 470 GLU D 34 CG CD OE1 OE2 REMARK 470 LYS D 48 CG CD CE NZ REMARK 470 GLU D 51 CG CD OE1 OE2 REMARK 470 LYS D 63 CG CD CE NZ REMARK 470 GLU D 64 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY D 75 N1 AYE D 101 1.77 REMARK 500 O GLY C 75 N1 AYE C 101 1.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A4087 -72.16 -63.10 REMARK 500 ASN A4102 32.34 -99.55 REMARK 500 GLU A4125 53.02 -95.95 REMARK 500 GLN A4179 47.82 -86.36 REMARK 500 GLU A4180 39.09 -89.92 REMARK 500 THR A4216 -45.53 -142.16 REMARK 500 LYS A4270 -23.99 85.47 REMARK 500 MET A4317 -78.67 -67.90 REMARK 500 CYS A4367 47.67 -148.98 REMARK 500 ASP B4087 -72.80 -65.35 REMARK 500 GLU B4125 71.55 -100.43 REMARK 500 THR B4216 -49.98 -143.09 REMARK 500 LYS B4270 -7.71 63.78 REMARK 500 MET B4317 -74.96 -72.39 REMARK 500 CYS B4367 52.93 -153.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 4401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 4402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AYE C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 4401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 4402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 D 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide AYE D 101 and GLY D REMARK 800 75 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide AYE D 101 and CYS B REMARK 800 4341 DBREF1 6XZ1 A 3993 4374 UNP A0A024R9Y3_HUMAN DBREF2 6XZ1 A A0A024R9Y3 3978 4359 DBREF 6XZ1 C 1 75 UNP P0CG47 UBB_HUMAN 1 75 DBREF1 6XZ1 B 3993 4374 UNP A0A024R9Y3_HUMAN DBREF2 6XZ1 B A0A024R9Y3 3978 4359 DBREF 6XZ1 D 1 75 UNP P0CG47 UBB_HUMAN 1 75 SEQADV 6XZ1 GLY A 3991 UNP A0A024R9Y EXPRESSION TAG SEQADV 6XZ1 PRO A 3992 UNP A0A024R9Y EXPRESSION TAG SEQADV 6XZ1 GLY B 3991 UNP A0A024R9Y EXPRESSION TAG SEQADV 6XZ1 PRO B 3992 UNP A0A024R9Y EXPRESSION TAG SEQRES 1 A 384 GLY PRO ASP PHE ASP VAL LYS ARG LYS TYR PHE ARG GLN SEQRES 2 A 384 GLU LEU GLU ARG LEU ASP GLU GLY LEU ARG LYS GLU ASP SEQRES 3 A 384 MET ALA VAL HIS VAL ARG ARG ASP HIS VAL PHE GLU ASP SEQRES 4 A 384 SER TYR ARG GLU LEU HIS ARG LYS SER PRO GLU GLU MET SEQRES 5 A 384 LYS ASN ARG LEU TYR ILE VAL PHE GLU GLY GLU GLU GLY SEQRES 6 A 384 GLN ASP ALA GLY GLY LEU LEU ARG GLU TRP TYR MET ILE SEQRES 7 A 384 ILE SER ARG GLU MET PHE ASN PRO MET TYR ALA LEU PHE SEQRES 8 A 384 ARG THR SER PRO GLY ASP ARG VAL THR TYR THR ILE ASN SEQRES 9 A 384 PRO SER SER HIS CYS ASN PRO ASN HIS LEU SER TYR PHE SEQRES 10 A 384 LYS PHE VAL GLY ARG ILE VAL ALA LYS ALA VAL TYR ASP SEQRES 11 A 384 ASN ARG LEU LEU GLU CYS TYR PHE THR ARG SER PHE TYR SEQRES 12 A 384 LYS HIS ILE LEU GLY LYS SER VAL ARG TYR THR ASP MET SEQRES 13 A 384 GLU SER GLU ASP TYR HIS PHE TYR GLN GLY LEU VAL TYR SEQRES 14 A 384 LEU LEU GLU ASN ASP VAL SER THR LEU GLY TYR ASP LEU SEQRES 15 A 384 THR PHE SER THR GLU VAL GLN GLU PHE GLY VAL CYS GLU SEQRES 16 A 384 VAL ARG ASP LEU LYS PRO ASN GLY ALA ASN ILE LEU VAL SEQRES 17 A 384 THR GLU GLU ASN LYS LYS GLU TYR VAL HIS LEU VAL CYS SEQRES 18 A 384 GLN MET ARG MET THR GLY ALA ILE ARG LYS GLN LEU ALA SEQRES 19 A 384 ALA PHE LEU GLU GLY PHE TYR GLU ILE ILE PRO LYS ARG SEQRES 20 A 384 LEU ILE SER ILE PHE THR GLU GLN GLU LEU GLU LEU LEU SEQRES 21 A 384 ILE SER GLY LEU PRO THR ILE ASP ILE ASP ASP LEU LYS SEQRES 22 A 384 SER ASN THR GLU TYR HIS LYS TYR GLN SER ASN SER ILE SEQRES 23 A 384 GLN ILE GLN TRP PHE TRP ARG ALA LEU ARG SER PHE ASP SEQRES 24 A 384 GLN ALA ASP ARG ALA LYS PHE LEU GLN PHE VAL THR GLY SEQRES 25 A 384 THR SER LYS VAL PRO LEU GLN GLY PHE ALA ALA LEU GLU SEQRES 26 A 384 GLY MET ASN GLY ILE GLN LYS PHE GLN ILE HIS ARG ASP SEQRES 27 A 384 ASP ARG SER THR ASP ARG LEU PRO SER ALA HIS THR CYS SEQRES 28 A 384 PHE ASN GLN LEU ASP LEU PRO ALA TYR GLU SER PHE GLU SEQRES 29 A 384 LYS LEU ARG HIS MET LEU LEU LEU ALA ILE GLN GLU CYS SEQRES 30 A 384 SER GLU GLY PHE GLY LEU ALA SEQRES 1 C 75 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 C 75 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 C 75 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 C 75 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 C 75 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 C 75 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY SEQRES 1 B 384 GLY PRO ASP PHE ASP VAL LYS ARG LYS TYR PHE ARG GLN SEQRES 2 B 384 GLU LEU GLU ARG LEU ASP GLU GLY LEU ARG LYS GLU ASP SEQRES 3 B 384 MET ALA VAL HIS VAL ARG ARG ASP HIS VAL PHE GLU ASP SEQRES 4 B 384 SER TYR ARG GLU LEU HIS ARG LYS SER PRO GLU GLU MET SEQRES 5 B 384 LYS ASN ARG LEU TYR ILE VAL PHE GLU GLY GLU GLU GLY SEQRES 6 B 384 GLN ASP ALA GLY GLY LEU LEU ARG GLU TRP TYR MET ILE SEQRES 7 B 384 ILE SER ARG GLU MET PHE ASN PRO MET TYR ALA LEU PHE SEQRES 8 B 384 ARG THR SER PRO GLY ASP ARG VAL THR TYR THR ILE ASN SEQRES 9 B 384 PRO SER SER HIS CYS ASN PRO ASN HIS LEU SER TYR PHE SEQRES 10 B 384 LYS PHE VAL GLY ARG ILE VAL ALA LYS ALA VAL TYR ASP SEQRES 11 B 384 ASN ARG LEU LEU GLU CYS TYR PHE THR ARG SER PHE TYR SEQRES 12 B 384 LYS HIS ILE LEU GLY LYS SER VAL ARG TYR THR ASP MET SEQRES 13 B 384 GLU SER GLU ASP TYR HIS PHE TYR GLN GLY LEU VAL TYR SEQRES 14 B 384 LEU LEU GLU ASN ASP VAL SER THR LEU GLY TYR ASP LEU SEQRES 15 B 384 THR PHE SER THR GLU VAL GLN GLU PHE GLY VAL CYS GLU SEQRES 16 B 384 VAL ARG ASP LEU LYS PRO ASN GLY ALA ASN ILE LEU VAL SEQRES 17 B 384 THR GLU GLU ASN LYS LYS GLU TYR VAL HIS LEU VAL CYS SEQRES 18 B 384 GLN MET ARG MET THR GLY ALA ILE ARG LYS GLN LEU ALA SEQRES 19 B 384 ALA PHE LEU GLU GLY PHE TYR GLU ILE ILE PRO LYS ARG SEQRES 20 B 384 LEU ILE SER ILE PHE THR GLU GLN GLU LEU GLU LEU LEU SEQRES 21 B 384 ILE SER GLY LEU PRO THR ILE ASP ILE ASP ASP LEU LYS SEQRES 22 B 384 SER ASN THR GLU TYR HIS LYS TYR GLN SER ASN SER ILE SEQRES 23 B 384 GLN ILE GLN TRP PHE TRP ARG ALA LEU ARG SER PHE ASP SEQRES 24 B 384 GLN ALA ASP ARG ALA LYS PHE LEU GLN PHE VAL THR GLY SEQRES 25 B 384 THR SER LYS VAL PRO LEU GLN GLY PHE ALA ALA LEU GLU SEQRES 26 B 384 GLY MET ASN GLY ILE GLN LYS PHE GLN ILE HIS ARG ASP SEQRES 27 B 384 ASP ARG SER THR ASP ARG LEU PRO SER ALA HIS THR CYS SEQRES 28 B 384 PHE ASN GLN LEU ASP LEU PRO ALA TYR GLU SER PHE GLU SEQRES 29 B 384 LYS LEU ARG HIS MET LEU LEU LEU ALA ILE GLN GLU CYS SEQRES 30 B 384 SER GLU GLY PHE GLY LEU ALA SEQRES 1 D 75 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 D 75 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 D 75 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 D 75 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 D 75 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 D 75 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY HET PO4 A4401 5 HET PO4 A4402 5 HET AYE C 101 4 HET PO4 B4401 5 HET PO4 B4402 5 HET AYE D 101 4 HET PO4 D 102 5 HETNAM PO4 PHOSPHATE ION HETNAM AYE PROP-2-EN-1-AMINE HETSYN AYE ALLYLAMINE FORMUL 5 PO4 5(O4 P 3-) FORMUL 7 AYE 2(C3 H7 N) FORMUL 12 HOH *162(H2 O) HELIX 1 AA1 GLY A 3991 ASP A 4009 1 19 HELIX 2 AA2 ARG A 4022 ASP A 4024 5 3 HELIX 3 AA3 HIS A 4025 HIS A 4035 1 11 HELIX 4 AA4 SER A 4038 LYS A 4043 1 6 HELIX 5 AA5 GLY A 4059 PHE A 4074 1 16 HELIX 6 AA6 ASN A 4075 ALA A 4079 5 5 HELIX 7 AA7 SER A 4096 ASN A 4100 5 5 HELIX 8 AA8 ASN A 4102 ASP A 4120 1 19 HELIX 9 AA9 THR A 4129 LEU A 4137 1 9 HELIX 10 AB1 ARG A 4142 THR A 4144 5 3 HELIX 11 AB2 ASP A 4145 ASP A 4150 1 6 HELIX 12 AB3 ASP A 4150 ASN A 4163 1 14 HELIX 13 AB4 ASP A 4164 LEU A 4168 5 5 HELIX 14 AB5 ASN A 4192 ILE A 4196 5 5 HELIX 15 AB6 ASN A 4202 THR A 4216 1 15 HELIX 16 AB7 ILE A 4219 GLU A 4232 1 14 HELIX 17 AB8 PRO A 4235 SER A 4240 1 6 HELIX 18 AB9 THR A 4243 GLY A 4253 1 11 HELIX 19 AC1 ASP A 4258 SER A 4264 1 7 HELIX 20 AC2 SER A 4275 SER A 4287 1 13 HELIX 21 AC3 ASP A 4289 GLY A 4302 1 14 HELIX 22 AC4 GLY A 4310 LEU A 4314 5 5 HELIX 23 AC5 SER A 4352 CYS A 4367 1 16 HELIX 24 AC6 THR C 22 GLY C 35 1 14 HELIX 25 AC7 PRO C 37 ASP C 39 5 3 HELIX 26 AC8 LEU C 56 ASN C 60 5 5 HELIX 27 AC9 PRO B 3992 ASP B 4009 1 18 HELIX 28 AD1 ARG B 4022 ASP B 4024 5 3 HELIX 29 AD2 HIS B 4025 HIS B 4035 1 11 HELIX 30 AD3 SER B 4038 LYS B 4043 1 6 HELIX 31 AD4 GLY B 4059 PHE B 4074 1 16 HELIX 32 AD5 ASN B 4075 ALA B 4079 5 5 HELIX 33 AD6 PRO B 4095 ASN B 4100 5 6 HELIX 34 AD7 ASN B 4102 ASP B 4120 1 19 HELIX 35 AD8 THR B 4129 LEU B 4137 1 9 HELIX 36 AD9 ARG B 4142 THR B 4144 5 3 HELIX 37 AE1 ASP B 4145 ASP B 4150 1 6 HELIX 38 AE2 ASP B 4150 GLU B 4162 1 13 HELIX 39 AE3 ASP B 4164 GLY B 4169 1 6 HELIX 40 AE4 ASN B 4192 ILE B 4196 5 5 HELIX 41 AE5 ASN B 4202 THR B 4216 1 15 HELIX 42 AE6 ILE B 4219 GLU B 4232 1 14 HELIX 43 AE7 PRO B 4235 SER B 4240 1 6 HELIX 44 AE8 THR B 4243 GLY B 4253 1 11 HELIX 45 AE9 ASP B 4258 ASN B 4265 1 8 HELIX 46 AF1 SER B 4275 PHE B 4288 1 14 HELIX 47 AF2 ASP B 4289 GLY B 4302 1 14 HELIX 48 AF3 GLY B 4310 LEU B 4314 5 5 HELIX 49 AF4 SER B 4352 CYS B 4367 1 16 HELIX 50 AF5 THR D 22 GLY D 35 1 14 HELIX 51 AF6 PRO D 37 ASP D 39 5 3 HELIX 52 AF7 LEU D 56 ASN D 60 5 5 SHEET 1 AA1 2 ASP A4016 VAL A4021 0 SHEET 2 AA1 2 ARG A4045 PHE A4050 1 O ARG A4045 N MET A4017 SHEET 1 AA2 2 PHE A4081 SER A4084 0 SHEET 2 AA2 2 THR A4090 ILE A4093 -1 O THR A4090 N SER A4084 SHEET 1 AA3 2 SER A4175 GLU A4177 0 SHEET 2 AA3 2 VAL A4186 ASP A4188 -1 O ARG A4187 N THR A4176 SHEET 1 AA4 5 THR A4266 HIS A4269 0 SHEET 2 AA4 5 PHE A4323 ASP A4328 1 O PHE A4323 N GLU A4267 SHEET 3 AA4 5 GLN A4344 PRO A4348 1 O LEU A4347 N HIS A4326 SHEET 4 AA4 5 SER A4337 HIS A4339 -1 N SER A4337 O ASP A4346 SHEET 5 AA4 5 ARG C 74 GLY C 75 1 O GLY C 75 N ALA A4338 SHEET 1 AA5 5 THR C 12 GLU C 16 0 SHEET 2 AA5 5 GLN C 2 LYS C 6 -1 N VAL C 5 O ILE C 13 SHEET 3 AA5 5 THR C 66 LEU C 71 1 O LEU C 67 N PHE C 4 SHEET 4 AA5 5 GLN C 41 PHE C 45 -1 N ARG C 42 O VAL C 70 SHEET 5 AA5 5 LYS C 48 GLN C 49 -1 O LYS C 48 N PHE C 45 SHEET 1 AA6 2 ASP B4016 VAL B4021 0 SHEET 2 AA6 2 ARG B4045 PHE B4050 1 O ARG B4045 N MET B4017 SHEET 1 AA7 2 PHE B4081 SER B4084 0 SHEET 2 AA7 2 THR B4090 ILE B4093 -1 O THR B4090 N SER B4084 SHEET 1 AA8 2 SER B4175 GLU B4177 0 SHEET 2 AA8 2 VAL B4186 ASP B4188 -1 O ARG B4187 N THR B4176 SHEET 1 AA9 5 THR B4266 HIS B4269 0 SHEET 2 AA9 5 PHE B4323 ASP B4328 1 O PHE B4323 N GLU B4267 SHEET 3 AA9 5 GLN B4344 PRO B4348 1 O LEU B4347 N HIS B4326 SHEET 4 AA9 5 SER B4337 HIS B4339 -1 N SER B4337 O ASP B4346 SHEET 5 AA9 5 ARG D 74 GLY D 75 1 O GLY D 75 N ALA B4338 SHEET 1 AB1 5 THR D 12 GLU D 16 0 SHEET 2 AB1 5 GLN D 2 LYS D 6 -1 N VAL D 5 O ILE D 13 SHEET 3 AB1 5 THR D 66 LEU D 71 1 O LEU D 67 N PHE D 4 SHEET 4 AB1 5 GLN D 41 PHE D 45 -1 N ARG D 42 O VAL D 70 SHEET 5 AB1 5 LYS D 48 GLN D 49 -1 O LYS D 48 N PHE D 45 SSBOND 1 CYS A 4184 CYS B 4184 1555 1555 2.03 LINK SG CYS A4341 C2 AYE C 101 1555 1555 1.77 LINK C GLY C 75 N1 AYE C 101 1555 1555 1.43 LINK SG CYS B4341 C2 AYE D 101 1555 1555 1.77 LINK C GLY D 75 N1 AYE D 101 1555 1555 1.43 SITE 1 AC1 3 ARG A4142 TYR A4143 HIS A4208 SITE 1 AC2 4 ARG A4283 HOH A4518 LYS B4263 ARG B4286 SITE 1 AC3 5 GLN A4056 THR A4340 CYS A4341 ALA A4374 SITE 2 AC3 5 GLY C 75 SITE 1 AC4 3 HIS B4035 SER B4105 HOH B4517 SITE 1 AC5 3 ARG B4142 TYR B4143 HIS B4208 SITE 1 AC6 4 ARG B4334 LEU B4373 ASP D 39 GLN D 40 SITE 1 AC7 10 GLN B4056 LEU B4061 ALA B4338 HIS B4339 SITE 2 AC7 10 THR B4340 CYS B4341 PHE B4371 LEU B4373 SITE 3 AC7 10 ALA B4374 ARG D 74 SITE 1 AC8 13 GLN B4056 ALA B4058 GLY B4060 LEU B4061 SITE 2 AC8 13 ARG B4063 GLY B4316 MET B4317 HIS B4339 SITE 3 AC8 13 THR B4340 PHE B4342 ASN B4343 ALA B4374 SITE 4 AC8 13 GLY D 75 CRYST1 140.552 142.171 103.512 90.00 129.61 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007115 0.000000 0.005887 0.00000 SCALE2 0.000000 0.007034 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012539 0.00000