HEADER OXIDOREDUCTASE 10-FEB-20 6Y0N TITLE ARGININE HYDROXYLASE VIOC IN COMPLEX WITH ARG, 2OG AND FE UNDER TITLE 2 ANAEROBIC ENVIRONMENT USING FT-SSX METHODS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-KETOGLUTARATE-DEPENDENT L-ARGININE HYDROXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VIOMYCIN BIOSYNTHESIS PROTEIN C; COMPND 5 EC: 1.14.11.41; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES VINACEUS; SOURCE 3 ORGANISM_TAXID: 1960; SOURCE 4 GENE: VIOC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS IRON DEPENDENT OXYGENASE, PENICILLIN BIOSYNTHESIS, ISOPENICILLIN N, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.RABE,J.H.BEALE,P.A.LANG,S.A.DIRR,T.M.LEISSING,A.BUTRYN,P.ALLER, AUTHOR 2 J.J.A.G.KAMPS,D.AXFORD,M.A.MCDONOUGH,A.M.ORVILLE,R.OWEN, AUTHOR 3 C.J.SCHOFIELD REVDAT 3 24-JAN-24 6Y0N 1 REMARK REVDAT 2 30-SEP-20 6Y0N 1 JRNL REVDAT 1 09-SEP-20 6Y0N 0 JRNL AUTH P.RABE,J.H.BEALE,A.BUTRYN,P.ALLER,A.DIRR,P.A.LANG, JRNL AUTH 2 D.N.AXFORD,S.B.CARR,T.M.LEISSING,M.A.MCDONOUGH,B.DAVY, JRNL AUTH 3 A.EBRAHIM,J.ORLANS,S.L.S.STORM,A.M.ORVILLE,C.J.SCHOFIELD, JRNL AUTH 4 R.L.OWEN JRNL TITL ANAEROBIC FIXED-TARGET SERIAL CRYSTALLOGRAPHY. JRNL REF IUCRJ V. 7 901 2020 JRNL REFN ESSN 2052-2525 JRNL PMID 32939282 JRNL DOI 10.1107/S2052252520010374 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27066 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.386 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.6900 - 4.4800 1.00 1842 146 0.1600 0.2000 REMARK 3 2 4.4800 - 3.5600 1.00 1803 143 0.1400 0.1700 REMARK 3 3 3.5600 - 3.1100 1.00 1795 144 0.1600 0.1900 REMARK 3 4 3.1100 - 2.8200 1.00 1808 144 0.1900 0.2300 REMARK 3 5 2.8200 - 2.6200 1.00 1791 142 0.2000 0.2500 REMARK 3 6 2.6200 - 2.4700 1.00 1794 144 0.1900 0.2500 REMARK 3 7 2.4700 - 2.3400 1.00 1774 141 0.2000 0.2700 REMARK 3 8 2.3400 - 2.2400 1.00 1786 143 0.2200 0.2500 REMARK 3 9 2.2400 - 2.1600 1.00 1767 142 0.2200 0.2700 REMARK 3 10 2.1600 - 2.0800 1.00 1797 142 0.2300 0.3100 REMARK 3 11 2.0900 - 2.0200 1.00 1781 142 0.2500 0.2800 REMARK 3 12 2.0200 - 1.9600 1.00 1763 141 0.2500 0.2900 REMARK 3 13 1.9600 - 1.9100 1.00 1791 143 0.2700 0.3100 REMARK 3 14 1.9100 - 1.8600 1.00 1775 142 0.3000 0.3500 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.720 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2587 REMARK 3 ANGLE : 0.612 3531 REMARK 3 CHIRALITY : 0.042 387 REMARK 3 PLANARITY : 0.003 476 REMARK 3 DIHEDRAL : 10.977 1536 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8435 -16.9559 14.5812 REMARK 3 T TENSOR REMARK 3 T11: 0.2097 T22: 0.1430 REMARK 3 T33: 0.1271 T12: -0.0494 REMARK 3 T13: -0.0741 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 3.6030 L22: 5.7239 REMARK 3 L33: 2.0681 L12: 1.3140 REMARK 3 L13: 1.2461 L23: -1.8348 REMARK 3 S TENSOR REMARK 3 S11: -0.0549 S12: -0.0968 S13: -0.9604 REMARK 3 S21: 0.1555 S22: -0.0537 S23: 0.3572 REMARK 3 S31: 0.4443 S32: -0.0511 S33: 0.1083 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8793 -12.8620 3.1441 REMARK 3 T TENSOR REMARK 3 T11: 0.2834 T22: 0.1845 REMARK 3 T33: 0.2225 T12: 0.0254 REMARK 3 T13: -0.0209 T23: -0.0515 REMARK 3 L TENSOR REMARK 3 L11: 7.2045 L22: 3.0752 REMARK 3 L33: 8.8324 L12: -1.4455 REMARK 3 L13: 0.0211 L23: -2.5833 REMARK 3 S TENSOR REMARK 3 S11: -0.0911 S12: 0.4732 S13: -0.0576 REMARK 3 S21: 0.0690 S22: 0.0431 S23: -0.1685 REMARK 3 S31: 0.0031 S32: 0.5218 S33: -0.0068 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5777 -10.6968 15.1170 REMARK 3 T TENSOR REMARK 3 T11: 0.1925 T22: 0.1025 REMARK 3 T33: 0.1762 T12: -0.0019 REMARK 3 T13: -0.0080 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 3.2401 L22: 0.3640 REMARK 3 L33: 2.3982 L12: -0.5107 REMARK 3 L13: 2.0464 L23: -0.6610 REMARK 3 S TENSOR REMARK 3 S11: 0.0944 S12: 0.0302 S13: -0.0815 REMARK 3 S21: 0.0204 S22: 0.0413 S23: 0.0049 REMARK 3 S31: 0.1630 S32: -0.0028 S33: -0.1456 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8272 2.4542 19.4267 REMARK 3 T TENSOR REMARK 3 T11: 0.1844 T22: 0.1921 REMARK 3 T33: 0.2002 T12: -0.0130 REMARK 3 T13: -0.0094 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.8630 L22: 1.9504 REMARK 3 L33: 2.0496 L12: -0.4882 REMARK 3 L13: -0.0421 L23: -0.1447 REMARK 3 S TENSOR REMARK 3 S11: -0.0271 S12: -0.0691 S13: 0.0141 REMARK 3 S21: 0.2279 S22: 0.0173 S23: -0.1139 REMARK 3 S31: -0.0640 S32: 0.1406 S33: 0.0369 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 199 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6036 20.0502 14.6716 REMARK 3 T TENSOR REMARK 3 T11: 0.2197 T22: 0.1307 REMARK 3 T33: 0.1205 T12: 0.0220 REMARK 3 T13: 0.0210 T23: -0.0447 REMARK 3 L TENSOR REMARK 3 L11: 5.7285 L22: 6.0447 REMARK 3 L33: 6.1392 L12: 0.0575 REMARK 3 L13: 0.7798 L23: -0.7320 REMARK 3 S TENSOR REMARK 3 S11: 0.0138 S12: 0.1246 S13: 0.1543 REMARK 3 S21: -0.2415 S22: -0.0769 S23: 0.0364 REMARK 3 S31: -0.1270 S32: 0.0889 S33: 0.0384 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 223 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3531 12.2626 15.1956 REMARK 3 T TENSOR REMARK 3 T11: 0.5688 T22: 0.9519 REMARK 3 T33: 0.8945 T12: -0.0264 REMARK 3 T13: 0.1069 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 6.0462 L22: 7.1617 REMARK 3 L33: 3.0208 L12: 4.6836 REMARK 3 L13: 0.5744 L23: -2.7406 REMARK 3 S TENSOR REMARK 3 S11: -0.6979 S12: 0.1361 S13: 0.5794 REMARK 3 S21: -0.1201 S22: -0.7111 S23: -1.5135 REMARK 3 S31: 0.0431 S32: 0.4074 S33: 1.2814 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 249 THROUGH 265 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0916 16.2237 9.7103 REMARK 3 T TENSOR REMARK 3 T11: 0.2436 T22: 0.2265 REMARK 3 T33: 0.2133 T12: 0.0580 REMARK 3 T13: 0.0190 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 8.6134 L22: 7.8548 REMARK 3 L33: 5.7452 L12: 4.4133 REMARK 3 L13: 0.1304 L23: 1.2612 REMARK 3 S TENSOR REMARK 3 S11: 0.0110 S12: 0.2566 S13: 0.4742 REMARK 3 S21: -0.1711 S22: -0.1346 S23: -0.0205 REMARK 3 S31: -0.2374 S32: 0.2273 S33: 0.2211 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 266 THROUGH 295 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0939 20.4702 20.5433 REMARK 3 T TENSOR REMARK 3 T11: 0.2289 T22: 0.1795 REMARK 3 T33: 0.1677 T12: -0.0297 REMARK 3 T13: -0.0033 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 5.1337 L22: 5.9048 REMARK 3 L33: 5.4846 L12: 1.2100 REMARK 3 L13: -0.7124 L23: 0.8511 REMARK 3 S TENSOR REMARK 3 S11: -0.0262 S12: -0.0335 S13: 0.3168 REMARK 3 S21: 0.1071 S22: -0.1298 S23: -0.0557 REMARK 3 S31: -0.5310 S32: 0.2901 S33: 0.1426 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 296 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4112 -2.0643 25.1525 REMARK 3 T TENSOR REMARK 3 T11: 0.1576 T22: 0.1519 REMARK 3 T33: 0.1506 T12: -0.0051 REMARK 3 T13: 0.0440 T23: 0.0267 REMARK 3 L TENSOR REMARK 3 L11: 3.6983 L22: 2.3421 REMARK 3 L33: 2.6325 L12: -1.3546 REMARK 3 L13: 2.2486 L23: -0.5918 REMARK 3 S TENSOR REMARK 3 S11: -0.0920 S12: -0.2232 S13: -0.0216 REMARK 3 S21: 0.1805 S22: 0.0197 S23: 0.0988 REMARK 3 S31: 0.0297 S32: -0.1466 S33: 0.0331 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 331 THROUGH 356 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1974 1.4074 5.0260 REMARK 3 T TENSOR REMARK 3 T11: 0.2365 T22: 0.2691 REMARK 3 T33: 0.2493 T12: 0.0322 REMARK 3 T13: 0.0562 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 1.2960 L22: 2.9360 REMARK 3 L33: 8.0612 L12: -0.9763 REMARK 3 L13: 3.4622 L23: -3.4040 REMARK 3 S TENSOR REMARK 3 S11: -0.1132 S12: 0.2997 S13: 0.2051 REMARK 3 S21: -0.2384 S22: -0.2130 S23: -0.4179 REMARK 3 S31: -0.0395 S32: 0.5822 S33: 0.3704 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 1 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9763 8.3587 20.8183 REMARK 3 T TENSOR REMARK 3 T11: 0.6120 T22: 0.8884 REMARK 3 T33: 0.8152 T12: 0.4503 REMARK 3 T13: -0.0439 T23: -0.4065 REMARK 3 L TENSOR REMARK 3 L11: 4.7964 L22: 4.0923 REMARK 3 L33: 2.1607 L12: 1.6880 REMARK 3 L13: 2.9001 L23: 2.2159 REMARK 3 S TENSOR REMARK 3 S11: 0.5990 S12: -0.4700 S13: 3.4546 REMARK 3 S21: -0.9252 S22: -0.7803 S23: -6.1413 REMARK 3 S31: 1.3141 S32: 0.8257 S33: 0.0321 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Y0N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292105265. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96863 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 1.8 REMARK 200 DATA SCALING SOFTWARE : DIALS 1.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27964 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 59.692 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 86.89 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.7900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2WBO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M MGCL2, 26% PEG 550, 0.1M HEPES, REMARK 280 PH 7.5, BATCH MODE, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 40.99500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.28900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 40.99500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.28900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 SER A 4 REMARK 465 PRO A 5 REMARK 465 THR A 6 REMARK 465 THR A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 GLY A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 PRO A 13 REMARK 465 PRO A 14 REMARK 465 ASP A 15 REMARK 465 SER A 16 REMARK 465 VAL A 17 REMARK 465 ALA A 18 REMARK 465 THR A 19 REMARK 465 PRO A 20 REMARK 465 ALA A 233 REMARK 465 GLN A 234 REMARK 465 GLN A 235 REMARK 465 GLY A 236 REMARK 465 ARG A 237 REMARK 465 VAL A 238 REMARK 465 GLU A 239 REMARK 465 PHE A 240 REMARK 465 GLU A 241 REMARK 465 GLN A 357 REMARK 465 ARG A 358 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 21 N CB CG1 CG2 REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 46 NE2 REMARK 470 ARG A 47 NH1 REMARK 470 ARG A 69 NH1 NH2 REMARK 470 ARG A 77 NH1 NH2 REMARK 470 ARG A 107 CD NE CZ NH1 NH2 REMARK 470 LYS A 150 CE NZ REMARK 470 ARG A 207 NE CZ NH1 NH2 REMARK 470 ILE A 219 CG1 CD1 REMARK 470 ARG A 220 NE CZ NH1 NH2 REMARK 470 LEU A 226 CG CD1 CD2 REMARK 470 GLN A 227 CG CD OE1 NE2 REMARK 470 VAL A 228 CG1 CG2 REMARK 470 THR A 232 CB OG1 CG2 REMARK 470 ALA A 244 CB REMARK 470 GLN A 245 CG CD OE1 NE2 REMARK 470 ALA A 246 CB REMARK 470 ALA A 247 CB REMARK 470 ASP A 248 CG OD1 OD2 REMARK 470 ARG A 249 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 251 CG CD OE1 OE2 REMARK 470 GLU A 276 CG CD OE1 OE2 REMARK 470 LYS A 290 CG CD CE NZ REMARK 470 GLN A 322 CG CD OE1 NE2 REMARK 470 ARG A 334 NH1 NH2 REMARK 470 ARG A 343 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 346 CE NZ REMARK 470 GLY A 356 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 222 HG SER A 224 1.55 REMARK 500 OD1 ASP A 302 O HOH A 501 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 161 -72.52 -156.21 REMARK 500 ASN A 188 62.31 -153.88 REMARK 500 ALA A 262 65.47 -154.13 REMARK 500 ALA A 349 -104.89 -83.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 403 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 168 NE2 REMARK 620 2 GLU A 170 OE1 93.1 REMARK 620 3 HIS A 316 NE2 100.5 95.1 REMARK 620 4 AKG A 402 O2 171.9 87.7 87.4 REMARK 620 5 AKG A 402 O5 100.0 166.6 85.4 78.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ARG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AKG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6ALR RELATED DB: PDB REMARK 900 RELATED ID: 2WBO RELATED DB: PDB DBREF 6Y0N A 1 358 UNP Q6WZB0 ARGHX_STRVI 1 358 SEQRES 1 A 358 MET THR GLU SER PRO THR THR HIS HIS GLY ALA ALA PRO SEQRES 2 A 358 PRO ASP SER VAL ALA THR PRO VAL ARG PRO TRP SER GLU SEQRES 3 A 358 PHE ARG LEU THR PRO ALA GLU ALA ALA ALA ALA ALA ALA SEQRES 4 A 358 LEU ALA ALA ARG CYS ALA GLN ARG TYR ASP GLU THR ASP SEQRES 5 A 358 GLY PRO GLU PHE LEU LEU ASP ALA PRO VAL ILE ALA HIS SEQRES 6 A 358 GLU LEU PRO ARG ARG LEU ARG THR PHE MET ALA ARG ALA SEQRES 7 A 358 ARG LEU ASP ALA TRP PRO HIS ALA LEU VAL VAL ARG GLY SEQRES 8 A 358 ASN PRO VAL ASP ASP ALA ALA LEU GLY SER THR PRO VAL SEQRES 9 A 358 HIS TRP ARG THR ALA ARG THR PRO GLY SER ARG PRO LEU SEQRES 10 A 358 SER PHE LEU LEU MET LEU TYR ALA GLY LEU LEU GLY ASP SEQRES 11 A 358 VAL PHE GLY TRP ALA THR GLN GLN ASP GLY ARG VAL VAL SEQRES 12 A 358 THR ASP VAL LEU PRO ILE LYS GLY GLY GLU HIS THR LEU SEQRES 13 A 358 VAL SER SER SER SER ARG GLN GLU LEU GLY TRP HIS THR SEQRES 14 A 358 GLU ASP ALA PHE SER PRO TYR ARG ALA ASP TYR VAL GLY SEQRES 15 A 358 LEU LEU SER LEU ARG ASN PRO ASP GLY VAL ALA THR THR SEQRES 16 A 358 LEU ALA GLY VAL PRO LEU ASP ASP LEU ASP GLU ARG THR SEQRES 17 A 358 LEU ASP VAL LEU PHE GLN GLU ARG PHE LEU ILE ARG PRO SEQRES 18 A 358 ASP ASP SER HIS LEU GLN VAL ASN ASN SER THR ALA GLN SEQRES 19 A 358 GLN GLY ARG VAL GLU PHE GLU GLY ILE ALA GLN ALA ALA SEQRES 20 A 358 ASP ARG PRO GLU PRO VAL ALA ILE LEU THR GLY HIS ARG SEQRES 21 A 358 ALA ALA PRO HIS LEU ARG VAL ASP GLY ASP PHE SER ALA SEQRES 22 A 358 PRO ALA GLU GLY ASP GLU GLU ALA ALA ALA ALA LEU GLY SEQRES 23 A 358 THR LEU ARG LYS LEU ILE ASP ALA SER LEU TYR GLU LEU SEQRES 24 A 358 VAL LEU ASP GLN GLY ASP VAL ALA PHE ILE ASP ASN ARG SEQRES 25 A 358 ARG ALA VAL HIS GLY ARG ARG ALA PHE GLN PRO ARG TYR SEQRES 26 A 358 ASP GLY ARG ASP ARG TRP LEU LYS ARG ILE ASN ILE THR SEQRES 27 A 358 ARG ASP LEU HIS ARG SER ARG LYS ALA TRP ALA GLY ASP SEQRES 28 A 358 SER ARG VAL LEU GLY GLN ARG HET ARG A 401 27 HET AKG A 402 16 HET FE A 403 1 HETNAM ARG ARGININE HETNAM AKG 2-OXOGLUTARIC ACID HETNAM FE FE (III) ION FORMUL 2 ARG C6 H15 N4 O2 1+ FORMUL 3 AKG C5 H6 O5 FORMUL 4 FE FE 3+ FORMUL 5 HOH *150(H2 O) HELIX 1 AA1 THR A 30 TYR A 48 1 19 HELIX 2 AA2 GLY A 53 ALA A 64 1 12 HELIX 3 AA3 HIS A 65 LEU A 67 5 3 HELIX 4 AA4 PRO A 68 ARG A 79 1 12 HELIX 5 AA5 ASP A 95 GLY A 100 1 6 HELIX 6 AA6 SER A 114 LEU A 127 1 14 HELIX 7 AA7 GLN A 137 ARG A 141 5 5 HELIX 8 AA8 ASP A 205 PHE A 213 1 9 HELIX 9 AA9 ASP A 222 ASN A 230 5 9 HELIX 10 AB1 ILE A 243 ARG A 249 1 7 HELIX 11 AB2 ASP A 278 LEU A 296 1 19 HELIX 12 AB3 ASP A 340 TRP A 348 5 9 SHEET 1 AA1 6 SER A 25 ARG A 28 0 SHEET 2 AA1 6 ALA A 86 ARG A 90 1 O VAL A 88 N SER A 25 SHEET 3 AA1 6 VAL A 306 ASP A 310 -1 O VAL A 306 N VAL A 89 SHEET 4 AA1 6 TYR A 180 ARG A 187 -1 N VAL A 181 O ILE A 309 SHEET 5 AA1 6 TRP A 331 THR A 338 -1 O ILE A 335 N GLY A 182 SHEET 6 AA1 6 THR A 144 VAL A 146 -1 N VAL A 146 O LEU A 332 SHEET 1 AA2 7 SER A 25 ARG A 28 0 SHEET 2 AA2 7 ALA A 86 ARG A 90 1 O VAL A 88 N SER A 25 SHEET 3 AA2 7 VAL A 306 ASP A 310 -1 O VAL A 306 N VAL A 89 SHEET 4 AA2 7 TYR A 180 ARG A 187 -1 N VAL A 181 O ILE A 309 SHEET 5 AA2 7 TRP A 331 THR A 338 -1 O ILE A 335 N GLY A 182 SHEET 6 AA2 7 ASP A 130 TRP A 134 -1 N ASP A 130 O THR A 338 SHEET 7 AA2 7 VAL A 354 LEU A 355 1 O LEU A 355 N GLY A 133 SHEET 1 AA3 4 LEU A 165 HIS A 168 0 SHEET 2 AA3 4 ALA A 314 ARG A 318 -1 O ARG A 318 N LEU A 165 SHEET 3 AA3 4 ALA A 193 GLY A 198 -1 N ALA A 197 O VAL A 315 SHEET 4 AA3 4 TYR A 297 VAL A 300 -1 O LEU A 299 N THR A 194 SHEET 1 AA4 2 PHE A 217 ILE A 219 0 SHEET 2 AA4 2 SER A 272 PRO A 274 -1 O ALA A 273 N LEU A 218 SHEET 1 AA5 2 LEU A 256 HIS A 259 0 SHEET 2 AA5 2 ALA A 262 LEU A 265 -1 O HIS A 264 N THR A 257 LINK NE2 HIS A 168 FE FE A 403 1555 1555 2.15 LINK OE1 GLU A 170 FE FE A 403 1555 1555 2.09 LINK NE2 HIS A 316 FE FE A 403 1555 1555 1.98 LINK O2 AKG A 402 FE FE A 403 1555 1555 2.33 LINK O5 AKG A 402 FE FE A 403 1555 1555 2.19 SITE 1 AC1 14 GLN A 137 LEU A 156 VAL A 157 SER A 158 SITE 2 AC1 14 LEU A 165 HIS A 168 GLU A 170 ASP A 222 SITE 3 AC1 14 SER A 224 ASP A 268 ASP A 270 PHE A 271 SITE 4 AC1 14 AKG A 402 FE A 403 SITE 1 AC2 13 SER A 158 LEU A 165 HIS A 168 GLU A 170 SITE 2 AC2 13 THR A 194 HIS A 316 ARG A 318 ARG A 330 SITE 3 AC2 13 LEU A 332 ARG A 334 ARG A 401 FE A 403 SITE 4 AC2 13 HOH A 503 SITE 1 AC3 5 HIS A 168 GLU A 170 HIS A 316 ARG A 401 SITE 2 AC3 5 AKG A 402 CRYST1 81.990 66.578 63.584 90.00 110.15 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012197 0.000000 0.004475 0.00000 SCALE2 0.000000 0.015020 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016753 0.00000