HEADER OXIDOREDUCTASE 10-FEB-20 6Y0O TITLE ISOPENICILLIN N SYNTHASE IN COMPLEX WITH ACV AND FE UNDER ANAEROBIC TITLE 2 ENVIRONMENT USING FT-SSX METHODS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANAEROBIC FIXED TARGET STRUCTURE OF ISOPENICILLIN N COMPND 3 SYNTHASE IN COMPLEX WITH FE AND ACV; COMPND 4 CHAIN: A; COMPND 5 EC: 1.21.3.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS NIDULANS FGSC A4; SOURCE 3 ORGANISM_TAXID: 227321; SOURCE 4 GENE: IPNA (IPS); SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: NM554; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PJB703 KEYWDS IRON DEPENDENT OXYGENASE, PENICILLIN BIOSYNTHESIS, ISOPENICILLIN N, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.RABE,J.H.BEALE,P.A.LANG,A.S.DIRR,T.M.LEISSING,A.BUTRYN,P.ALLER, AUTHOR 2 J.J.A.G.KAMPS,D.AXFORD,M.A.MCDONOUGH,A.M.ORVILLE,R.OWEN, AUTHOR 3 C.J.SCHOFIELD REVDAT 3 24-JAN-24 6Y0O 1 REMARK REVDAT 2 30-SEP-20 6Y0O 1 JRNL REVDAT 1 09-SEP-20 6Y0O 0 JRNL AUTH P.RABE,J.H.BEALE,A.BUTRYN,P.ALLER,A.DIRR,P.A.LANG, JRNL AUTH 2 D.N.AXFORD,S.B.CARR,T.M.LEISSING,M.A.MCDONOUGH,B.DAVY, JRNL AUTH 3 A.EBRAHIM,J.ORLANS,S.L.S.STORM,A.M.ORVILLE,C.J.SCHOFIELD, JRNL AUTH 4 R.L.OWEN JRNL TITL ANAEROBIC FIXED-TARGET SERIAL CRYSTALLOGRAPHY. JRNL REF IUCRJ V. 7 901 2020 JRNL REFN ESSN 2052-2525 JRNL PMID 32939282 JRNL DOI 10.1107/S2052252520010374 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 16749 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.973 REMARK 3 FREE R VALUE TEST SET COUNT : 833 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 60.8400 - 4.0000 1.00 2868 151 0.1400 0.1900 REMARK 3 2 4.0000 - 3.1700 1.00 2718 143 0.1700 0.1700 REMARK 3 3 3.1700 - 2.7700 1.00 2694 142 0.2300 0.2800 REMARK 3 4 2.7700 - 2.5200 1.00 2685 141 0.2800 0.3700 REMARK 3 5 2.5200 - 2.3400 0.97 2578 136 0.3100 0.3500 REMARK 3 6 2.3400 - 2.2100 0.89 2373 120 0.3200 0.3600 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2724 REMARK 3 ANGLE : 0.479 3720 REMARK 3 CHIRALITY : 0.042 392 REMARK 3 PLANARITY : 0.003 491 REMARK 3 DIHEDRAL : 8.472 1602 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0805 -3.4929 15.2441 REMARK 3 T TENSOR REMARK 3 T11: 0.1454 T22: 0.1769 REMARK 3 T33: 0.1531 T12: -0.0067 REMARK 3 T13: 0.0185 T23: 0.0540 REMARK 3 L TENSOR REMARK 3 L11: 3.0209 L22: 5.7880 REMARK 3 L33: 8.1647 L12: 1.2102 REMARK 3 L13: 1.1992 L23: 4.8052 REMARK 3 S TENSOR REMARK 3 S11: 0.0040 S12: -0.1916 S13: 0.0459 REMARK 3 S21: 0.3406 S22: 0.0520 S23: 0.0059 REMARK 3 S31: 0.0664 S32: -0.2111 S33: -0.0179 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.0415 2.9328 -11.0100 REMARK 3 T TENSOR REMARK 3 T11: 0.2616 T22: 0.1008 REMARK 3 T33: 0.2123 T12: 0.0063 REMARK 3 T13: -0.0452 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 2.0021 L22: 0.2933 REMARK 3 L33: 5.2785 L12: 0.3059 REMARK 3 L13: -1.2946 L23: -0.8116 REMARK 3 S TENSOR REMARK 3 S11: 0.1463 S12: 0.2353 S13: 0.1940 REMARK 3 S21: -0.2128 S22: 0.0748 S23: 0.1516 REMARK 3 S31: -0.2451 S32: -0.3979 S33: -0.2092 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6018 10.1275 -14.2856 REMARK 3 T TENSOR REMARK 3 T11: 0.2686 T22: 0.1977 REMARK 3 T33: 0.1566 T12: -0.0127 REMARK 3 T13: 0.0280 T23: 0.0541 REMARK 3 L TENSOR REMARK 3 L11: 1.7034 L22: 2.7244 REMARK 3 L33: 2.4919 L12: 0.8251 REMARK 3 L13: 0.0882 L23: -0.0486 REMARK 3 S TENSOR REMARK 3 S11: -0.0059 S12: 0.2856 S13: 0.1332 REMARK 3 S21: -0.2125 S22: 0.0674 S23: -0.0749 REMARK 3 S31: -0.5467 S32: 0.0256 S33: -0.0186 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 182 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0242 9.5698 5.2363 REMARK 3 T TENSOR REMARK 3 T11: 0.2717 T22: 0.1237 REMARK 3 T33: 0.1635 T12: 0.0038 REMARK 3 T13: 0.0235 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 1.3296 L22: 2.0859 REMARK 3 L33: 4.8839 L12: -0.5761 REMARK 3 L13: 0.3647 L23: -1.9011 REMARK 3 S TENSOR REMARK 3 S11: 0.0432 S12: -0.0406 S13: 0.0610 REMARK 3 S21: 0.0491 S22: 0.0898 S23: 0.0305 REMARK 3 S31: -0.6619 S32: 0.1295 S33: -0.0418 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 183 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4843 -9.3094 -3.3230 REMARK 3 T TENSOR REMARK 3 T11: 0.1132 T22: 0.1451 REMARK 3 T33: 0.1330 T12: -0.0022 REMARK 3 T13: 0.0132 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 1.6612 L22: 2.2606 REMARK 3 L33: 3.4170 L12: 0.1996 REMARK 3 L13: 0.4067 L23: 0.5924 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: -0.0292 S13: -0.1064 REMARK 3 S21: -0.0395 S22: 0.0333 S23: 0.0751 REMARK 3 S31: 0.0460 S32: -0.0033 S33: -0.0232 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 270 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1562 -7.5457 -7.7390 REMARK 3 T TENSOR REMARK 3 T11: 0.1474 T22: 0.1976 REMARK 3 T33: 0.1669 T12: 0.0157 REMARK 3 T13: 0.0069 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 1.3698 L22: 2.9141 REMARK 3 L33: 3.7924 L12: 0.6772 REMARK 3 L13: 0.5530 L23: 1.6576 REMARK 3 S TENSOR REMARK 3 S11: -0.0973 S12: 0.1718 S13: -0.0208 REMARK 3 S21: -0.0990 S22: 0.0080 S23: 0.2697 REMARK 3 S31: 0.1617 S32: -0.2441 S33: 0.1355 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5186 2.6838 9.8874 REMARK 3 T TENSOR REMARK 3 T11: 0.3306 T22: 0.5163 REMARK 3 T33: 0.2156 T12: -0.0940 REMARK 3 T13: -0.0732 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.5773 L22: 2.1779 REMARK 3 L33: 3.2922 L12: 1.0039 REMARK 3 L13: -2.2313 L23: -1.8569 REMARK 3 S TENSOR REMARK 3 S11: 0.1732 S12: -0.3384 S13: -0.0860 REMARK 3 S21: 0.4459 S22: -0.2361 S23: -0.1584 REMARK 3 S31: -0.4683 S32: 1.6394 S33: 0.3379 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 313 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0109 -0.9918 -8.4615 REMARK 3 T TENSOR REMARK 3 T11: 0.1648 T22: 0.3209 REMARK 3 T33: 0.2016 T12: -0.0281 REMARK 3 T13: -0.0039 T23: 0.0679 REMARK 3 L TENSOR REMARK 3 L11: 5.2079 L22: 8.3155 REMARK 3 L33: 6.2083 L12: 2.7577 REMARK 3 L13: 3.7549 L23: 5.7811 REMARK 3 S TENSOR REMARK 3 S11: -0.3023 S12: 0.4687 S13: 0.1918 REMARK 3 S21: -0.5219 S22: 0.3288 S23: -0.1809 REMARK 3 S31: -0.2777 S32: 1.1972 S33: -0.0942 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Y0O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292105214. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96863 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 1.8 REMARK 200 DATA SCALING SOFTWARE : DIALS 1.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16880 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 60.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 130.2 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.96 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1BLZ REMARK 200 REMARK 200 REMARK: NEEDLES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M LI2SO4, 0.1 M TRIS PH8.5, BATCH REMARK 280 MODE, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.94450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.01700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.89850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.01700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.94450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.89850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 3 O REMARK 470 VAL A 4 CB CG1 CG2 REMARK 470 ARG A 53 NE CZ NH1 NH2 REMARK 470 GLN A 56 OE1 NE2 REMARK 470 LYS A 57 CE NZ REMARK 470 LYS A 59 CE NZ REMARK 470 GLU A 60 OE2 REMARK 470 ARG A 76 NE CZ NH1 NH2 REMARK 470 LYS A 80 CD CE NZ REMARK 470 GLN A 118 CD OE1 NE2 REMARK 470 LYS A 120 CE NZ REMARK 470 ASP A 131 CG OD1 OD2 REMARK 470 LYS A 134 CD CE NZ REMARK 470 ARG A 173 NE CZ NH1 NH2 REMARK 470 LYS A 176 NZ REMARK 470 GLU A 197 CG CD OE1 OE2 REMARK 470 LYS A 201 CE NZ REMARK 470 ASN A 227 ND2 REMARK 470 GLU A 243 CD OE1 OE2 REMARK 470 LYS A 266 CD CE NZ REMARK 470 ASN A 303 OD1 ND2 REMARK 470 LYS A 305 CB CG CD CE NZ REMARK 470 ASP A 307 O OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 275 O HOH A 501 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 -101.68 -95.04 REMARK 500 HIS A 82 61.86 -106.08 REMARK 500 LEU A 106 -169.92 -111.66 REMARK 500 PHE A 110 99.45 -66.46 REMARK 500 THR A 123 -8.64 76.61 REMARK 500 ASP A 179 3.51 -156.33 REMARK 500 ASN A 230 -32.14 -157.49 REMARK 500 ASP A 307 32.52 -97.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 404 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 214 NE2 REMARK 620 2 ASP A 216 OD1 102.3 REMARK 620 3 HIS A 270 NE2 93.5 89.4 REMARK 620 4 ACV A 403 S17 92.1 89.9 174.4 REMARK 620 5 HOH A 578 O 156.1 99.7 95.9 78.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACV A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BK0 RELATED DB: PDB REMARK 900 RELATED ID: 1BLZ RELATED DB: PDB DBREF 6Y0O A 1 331 UNP P05326 IPNS_EMENI 1 331 SEQRES 1 A 331 MET GLY SER VAL SER LYS ALA ASN VAL PRO LYS ILE ASP SEQRES 2 A 331 VAL SER PRO LEU PHE GLY ASP ASP GLN ALA ALA LYS MET SEQRES 3 A 331 ARG VAL ALA GLN GLN ILE ASP ALA ALA SER ARG ASP THR SEQRES 4 A 331 GLY PHE PHE TYR ALA VAL ASN HIS GLY ILE ASN VAL GLN SEQRES 5 A 331 ARG LEU SER GLN LYS THR LYS GLU PHE HIS MET SER ILE SEQRES 6 A 331 THR PRO GLU GLU LYS TRP ASP LEU ALA ILE ARG ALA TYR SEQRES 7 A 331 ASN LYS GLU HIS GLN ASP GLN VAL ARG ALA GLY TYR TYR SEQRES 8 A 331 LEU SER ILE PRO GLY LYS LYS ALA VAL GLU SER PHE CYS SEQRES 9 A 331 TYR LEU ASN PRO ASN PHE THR PRO ASP HIS PRO ARG ILE SEQRES 10 A 331 GLN ALA LYS THR PRO THR HIS GLU VAL ASN VAL TRP PRO SEQRES 11 A 331 ASP GLU THR LYS HIS PRO GLY PHE GLN ASP PHE ALA GLU SEQRES 12 A 331 GLN TYR TYR TRP ASP VAL PHE GLY LEU SER SER ALA LEU SEQRES 13 A 331 LEU LYS GLY TYR ALA LEU ALA LEU GLY LYS GLU GLU ASN SEQRES 14 A 331 PHE PHE ALA ARG HIS PHE LYS PRO ASP ASP THR LEU ALA SEQRES 15 A 331 SER VAL VAL LEU ILE ARG TYR PRO TYR LEU ASP PRO TYR SEQRES 16 A 331 PRO GLU ALA ALA ILE LYS THR ALA ALA ASP GLY THR LYS SEQRES 17 A 331 LEU SER PHE GLU TRP HIS GLU ASP VAL SER LEU ILE THR SEQRES 18 A 331 VAL LEU TYR GLN SER ASN VAL GLN ASN LEU GLN VAL GLU SEQRES 19 A 331 THR ALA ALA GLY TYR GLN ASP ILE GLU ALA ASP ASP THR SEQRES 20 A 331 GLY TYR LEU ILE ASN CYS GLY SER TYR MET ALA HIS LEU SEQRES 21 A 331 THR ASN ASN TYR TYR LYS ALA PRO ILE HIS ARG VAL LYS SEQRES 22 A 331 TRP VAL ASN ALA GLU ARG GLN SER LEU PRO PHE PHE VAL SEQRES 23 A 331 ASN LEU GLY TYR ASP SER VAL ILE ASP PRO PHE ASP PRO SEQRES 24 A 331 ARG GLU PRO ASN GLY LYS SER ASP ARG GLU PRO LEU SER SEQRES 25 A 331 TYR GLY ASP TYR LEU GLN ASN GLY LEU VAL SER LEU ILE SEQRES 26 A 331 ASN LYS ASN GLY GLN THR HET SO4 A 401 5 HET SO4 A 402 5 HET ACV A 403 49 HET FE A 404 1 HETNAM SO4 SULFATE ION HETNAM ACV L-D-(A-AMINOADIPOYL)-L-CYSTEINYL-D-VALINE HETNAM FE FE (III) ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 ACV C14 H25 N3 O6 S FORMUL 5 FE FE 3+ FORMUL 6 HOH *111(H2 O) HELIX 1 AA1 SER A 15 GLY A 19 5 5 HELIX 2 AA2 ASP A 21 ASP A 38 1 18 HELIX 3 AA3 ASN A 50 ILE A 65 1 16 HELIX 4 AA4 THR A 66 ALA A 74 1 9 HELIX 5 AA5 HIS A 114 LYS A 120 1 7 HELIX 6 AA6 GLY A 137 LEU A 164 1 28 HELIX 7 AA7 PHE A 171 PHE A 175 5 5 HELIX 8 AA8 PRO A 196 ILE A 200 5 5 HELIX 9 AA9 GLY A 254 THR A 261 1 8 HELIX 10 AB1 SER A 312 GLY A 329 1 18 SHEET 1 AA1 8 LYS A 11 ASP A 13 0 SHEET 2 AA1 8 PHE A 41 VAL A 45 1 O TYR A 43 N ILE A 12 SHEET 3 AA1 8 TYR A 249 CYS A 253 -1 O TYR A 249 N ALA A 44 SHEET 4 AA1 8 ILE A 220 GLN A 225 -1 N THR A 221 O ASN A 252 SHEET 5 AA1 8 ARG A 279 VAL A 286 -1 O LEU A 282 N TYR A 224 SHEET 6 AA1 8 SER A 183 TYR A 189 -1 N TYR A 189 O ARG A 279 SHEET 7 AA1 8 GLU A 101 TYR A 105 -1 N GLU A 101 O ARG A 188 SHEET 8 AA1 8 GLY A 89 TYR A 91 -1 N TYR A 91 O SER A 102 SHEET 1 AA2 5 LYS A 201 THR A 202 0 SHEET 2 AA2 5 LYS A 208 HIS A 214 -1 O LEU A 209 N LYS A 201 SHEET 3 AA2 5 HIS A 270 LYS A 273 -1 O VAL A 272 N SER A 210 SHEET 4 AA2 5 LEU A 231 THR A 235 -1 N GLN A 232 O ARG A 271 SHEET 5 AA2 5 GLY A 238 ASP A 241 -1 O GLN A 240 N VAL A 233 LINK NE2 HIS A 214 FE FE A 404 1555 1555 2.08 LINK OD1 ASP A 216 FE FE A 404 1555 1555 1.94 LINK NE2 HIS A 270 FE FE A 404 1555 1555 2.21 LINK S17 ACV A 403 FE FE A 404 1555 1555 2.48 LINK FE FE A 404 O HOH A 578 1555 1555 2.04 CISPEP 1 ASP A 193 PRO A 194 0 0.11 SITE 1 AC1 3 ARG A 27 LYS A 80 HOH A 573 SITE 1 AC2 3 ARG A 37 LYS A 208 ARG A 300 SITE 1 AC3 17 ARG A 87 TYR A 91 SER A 183 TYR A 189 SITE 2 AC3 17 HIS A 214 ASP A 216 SER A 281 PRO A 283 SITE 3 AC3 17 PHE A 285 FE A 404 HOH A 502 HOH A 519 SITE 4 AC3 17 HOH A 538 HOH A 558 HOH A 578 HOH A 588 SITE 5 AC3 17 HOH A 598 SITE 1 AC4 5 HIS A 214 ASP A 216 HIS A 270 ACV A 403 SITE 2 AC4 5 HOH A 578 CRYST1 41.889 75.797 102.034 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023873 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013193 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009801 0.00000