HEADER RNA 10-FEB-20 6Y0T TITLE SARCIN RICIN LOOP, MUTANT C2666A U2653G C2667A COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (27-MER); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 32630 KEYWDS RNA, RIBOSOME EXPDTA X-RAY DIFFRACTION AUTHOR E.ENNIFAR,E.WESTHOF REVDAT 2 24-JAN-24 6Y0T 1 REMARK REVDAT 1 17-FEB-21 6Y0T 0 JRNL AUTH E.ENNIFAR,E.WESTHOF JRNL TITL SARCIN RICIN LOOP, MUTANT C2666A U2653G C2667A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.15.2_3472: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 30660 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1534 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 3.0979 1.00 2810 149 0.1592 0.1919 REMARK 3 2 3.0979 - 2.4591 1.00 2728 143 0.1587 0.1962 REMARK 3 3 2.4591 - 2.1483 1.00 2696 142 0.1594 0.1941 REMARK 3 4 2.1483 - 1.9519 1.00 2683 141 0.1468 0.1936 REMARK 3 5 1.9519 - 1.8120 1.00 2677 141 0.1420 0.1765 REMARK 3 6 1.8120 - 1.7052 1.00 2651 140 0.1446 0.1603 REMARK 3 7 1.7052 - 1.6198 1.00 2672 140 0.1589 0.2222 REMARK 3 8 1.6198 - 1.5493 1.00 2668 141 0.1825 0.2213 REMARK 3 9 1.5493 - 1.4897 1.00 2633 138 0.2302 0.2840 REMARK 3 10 1.4897 - 1.4383 1.00 2675 141 0.2672 0.3035 REMARK 3 11 1.4383 - 1.3933 0.85 2233 118 0.3276 0.3848 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.60 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1450 REMARK 3 ANGLE : 1.215 2264 REMARK 3 CHIRALITY : 0.050 296 REMARK 3 PLANARITY : 0.014 60 REMARK 3 DIHEDRAL : 12.444 710 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Y0T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292106659. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30750 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.390 REMARK 200 RESOLUTION RANGE LOW (A) : 33.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3DVZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 80MM KCL, 20MM MGCL2, 40MM NA REMARK 280 CACODYLATE PH 6.0, 46% MPD, 12MM SPERMINE TETRAHYDROCHLORIDE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 11.98000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 U A 2647 O5' C5' C4' O4' C3' O3' C2' REMARK 480 U A 2647 O2' C1' N1 C2 O2 N3 C4 REMARK 480 U A 2647 O4 C5 C6 REMARK 480 G A 2648 P OP1 OP2 O5' C5' C4' O4' REMARK 480 G A 2648 C3' O3' C2' O2' C1' N9 C8 REMARK 480 G A 2648 N7 C5 C6 O6 N1 C2 N2 REMARK 480 G A 2648 N3 C4 REMARK 480 C A 2649 P OP1 OP2 O5' C5' C4' O4' REMARK 480 C A 2649 C3' O3' C2' O2' C1' N1 C2 REMARK 480 C A 2649 O2 N3 C4 N4 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2848 O HOH A 2907 1.80 REMARK 500 O HOH B 2826 O HOH B 2891 1.96 REMARK 500 O HOH B 2847 O HOH B 2924 1.99 REMARK 500 OP1 A B 2654 O HOH B 2801 2.00 REMARK 500 N7 G B 2673 O HOH B 2802 2.01 REMARK 500 O2 U B 2647 O HOH B 2803 2.03 REMARK 500 O HOH A 2912 O HOH A 2921 2.04 REMARK 500 N7 G B 2673 O HOH B 2804 2.05 REMARK 500 O HOH B 2816 O HOH B 2892 2.07 REMARK 500 O HOH A 2854 O HOH A 2876 2.08 REMARK 500 OP1 A A 2654 O HOH A 2801 2.11 REMARK 500 O HOH B 2815 O HOH B 2871 2.12 REMARK 500 O HOH B 2802 O HOH B 2804 2.16 REMARK 500 O HOH B 2865 O HOH B 2928 2.16 REMARK 500 O HOH B 2888 O HOH B 2932 2.16 REMARK 500 N3 G A 2648 O HOH A 2802 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N7 G A 2673 O HOH B 2802 2465 2.01 REMARK 500 O HOH A 2813 O HOH B 2807 2465 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2935 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH B2947 DISTANCE = 5.86 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A2704 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A2654 O2' REMARK 620 2 G A2655 OP2 78.7 REMARK 620 3 HOH A2834 O 89.3 56.2 REMARK 620 4 HOH A2858 O 79.2 110.6 164.4 REMARK 620 5 HOH A2866 O 63.6 121.3 79.1 104.7 REMARK 620 6 HOH A2894 O 137.4 60.3 59.6 123.7 128.2 REMARK 620 7 HOH A2898 O 127.4 84.2 120.5 61.2 154.5 62.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A2655 OP2 REMARK 620 2 G A2659 O6 30.2 REMARK 620 3 HOH A2834 O 84.3 104.3 REMARK 620 4 HOH A2875 O 89.3 112.0 88.2 REMARK 620 5 HOH A2886 O 92.1 71.6 175.8 93.9 REMARK 620 6 HOH A2894 O 92.6 71.7 86.6 174.3 91.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A2705 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A2655 O5' REMARK 620 2 A A2657 OP2 45.2 REMARK 620 3 C A2658 OP2 41.4 4.7 REMARK 620 4 HOH A2886 O 53.3 16.0 15.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2702 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2815 O REMARK 620 2 HOH A2836 O 90.9 REMARK 620 3 HOH A2887 O 81.8 91.4 REMARK 620 4 HOH A2922 O 171.6 91.0 90.0 REMARK 620 5 HOH A2924 O 95.2 95.2 172.9 92.7 REMARK 620 6 HOH A2925 O 84.6 175.4 87.1 93.3 86.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A2703 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2819 O REMARK 620 2 HOH A2826 O 70.0 REMARK 620 3 HOH A2875 O 115.3 68.2 REMARK 620 4 HOH A2885 O 94.1 110.3 146.1 REMARK 620 5 HOH A2886 O 82.4 102.2 61.6 143.9 REMARK 620 6 HOH A2933 O 66.0 135.9 134.7 71.4 74.4 REMARK 620 7 HOH A2934 O 166.1 106.8 74.3 74.1 111.4 115.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B2704 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C B2652 O3' REMARK 620 2 G B2653 OP1 48.9 REMARK 620 3 A B2660 O3' 70.5 21.7 REMARK 620 4 G B2661 OP1 72.4 23.6 1.9 REMARK 620 5 HOH B2872 O 76.0 27.2 7.0 5.4 REMARK 620 6 HOH B2923 O 74.5 26.9 8.1 7.7 11.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B2703 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A B2654 O2' REMARK 620 2 G B2655 OP2 78.9 REMARK 620 3 HOH B2828 O 87.4 56.7 REMARK 620 4 HOH B2849 O 126.9 80.7 119.7 REMARK 620 5 HOH B2866 O 78.9 106.1 160.2 60.9 REMARK 620 6 HOH B2877 O 63.5 122.2 78.3 157.1 107.5 REMARK 620 7 HOH B2901 O 135.4 59.2 58.3 63.9 124.5 126.0 REMARK 620 8 HOH B2938 O 143.9 132.8 97.0 81.6 102.5 82.2 73.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B2655 OP2 REMARK 620 2 G B2659 O6 24.0 REMARK 620 3 HOH B2828 O 84.2 102.8 REMARK 620 4 HOH B2893 O 89.3 104.4 89.3 REMARK 620 5 HOH B2896 O 91.4 73.6 175.1 88.4 REMARK 620 6 HOH B2901 O 91.2 76.7 88.5 177.8 93.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2702 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2832 O REMARK 620 2 HOH B2834 O 91.3 REMARK 620 3 HOH B2884 O 92.4 83.1 REMARK 620 4 HOH B2926 O 93.1 91.1 172.1 REMARK 620 5 HOH B2930 O 95.1 172.7 92.9 92.3 REMARK 620 6 HOH B2931 O 172.8 82.1 89.6 84.4 91.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 2701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 2702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 2703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 2704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 2705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 2701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 2702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 2703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 2704 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3DVZ RELATED DB: PDB REMARK 900 WT SEQUENCE DBREF 6Y0T A 2647 2673 PDB 6Y0T 6Y0T 2647 2673 DBREF 6Y0T B 2647 2673 PDB 6Y0T 6Y0T 2647 2673 SEQRES 1 A 27 U G C U C C G A G U A C G SEQRES 2 A 27 A G A G G A A A G G A G U SEQRES 3 A 27 G SEQRES 1 B 27 U G C U C C G A G U A C G SEQRES 2 B 27 A G A G G A A A G G A G U SEQRES 3 B 27 G HET MG A2701 1 HET MG A2702 1 HET K A2703 1 HET K A2704 1 HET K A2705 1 HET MG B2701 1 HET MG B2702 1 HET K B2703 1 HET K B2704 1 HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION FORMUL 3 MG 4(MG 2+) FORMUL 5 K 5(K 1+) FORMUL 12 HOH *282(H2 O) LINK O2' A A2654 K K A2704 1555 1555 2.70 LINK OP2 G A2655 MG MG A2701 1555 1555 2.02 LINK OP2 G A2655 K K A2704 1555 1555 3.00 LINK O5' G A2655 K K A2705 1555 2556 3.24 LINK OP2 A A2657 K K A2705 1555 1555 2.82 LINK OP2 C A2658 K K A2705 1555 1555 2.73 LINK O6 G A2659 MG MG A2701 1555 2546 2.06 LINK MG MG A2701 O HOH A2834 1555 1555 2.10 LINK MG MG A2701 O HOH A2875 1555 1555 2.07 LINK MG MG A2701 O HOH A2886 1555 1555 2.04 LINK MG MG A2701 O HOH A2894 1555 1555 2.13 LINK MG MG A2702 O HOH A2815 1555 1555 2.09 LINK MG MG A2702 O HOH A2836 1555 1555 2.16 LINK MG MG A2702 O HOH A2887 1555 1555 2.05 LINK MG MG A2702 O HOH A2922 1555 1555 2.03 LINK MG MG A2702 O HOH A2924 1555 1555 2.23 LINK MG MG A2702 O HOH A2925 1555 1555 2.09 LINK K K A2703 O HOH A2819 1555 1555 2.56 LINK K K A2703 O HOH A2826 1555 1555 3.12 LINK K K A2703 O HOH A2875 1555 1555 2.94 LINK K K A2703 O HOH A2885 1555 2556 2.91 LINK K K A2703 O HOH A2886 1555 1555 2.93 LINK K K A2703 O HOH A2933 1555 1555 2.79 LINK K K A2703 O HOH A2934 1555 1555 2.65 LINK K K A2704 O HOH A2834 1555 1555 2.87 LINK K K A2704 O HOH A2858 1555 1555 2.71 LINK K K A2704 O HOH A2866 1555 1555 3.17 LINK K K A2704 O HOH A2894 1555 1555 2.97 LINK K K A2704 O HOH A2898 1555 1555 3.42 LINK K K A2705 O HOH A2886 1555 2546 2.72 LINK O3' C B2652 K K B2704 1555 2545 2.98 LINK OP1 G B2653 K K B2704 1555 2545 2.97 LINK O2' A B2654 K K B2703 1555 1555 2.74 LINK OP2 G B2655 MG MG B2701 1555 1555 2.02 LINK OP2 G B2655 K K B2703 1555 1555 2.88 LINK O6 G B2659 MG MG B2701 1555 2555 2.05 LINK O3' A B2660 K K B2704 1555 1555 2.85 LINK OP1 G B2661 K K B2704 1555 1555 2.73 LINK MG MG B2701 O HOH B2828 1555 1555 2.08 LINK MG MG B2701 O HOH B2893 1555 1555 2.15 LINK MG MG B2701 O HOH B2896 1555 1555 2.11 LINK MG MG B2701 O HOH B2901 1555 1555 2.13 LINK MG MG B2702 O HOH B2832 1555 1555 2.04 LINK MG MG B2702 O HOH B2834 1555 1555 2.02 LINK MG MG B2702 O HOH B2884 1555 1555 2.06 LINK MG MG B2702 O HOH B2926 1555 1555 2.09 LINK MG MG B2702 O HOH B2930 1555 1555 2.07 LINK MG MG B2702 O HOH B2931 1555 1555 2.27 LINK K K B2703 O HOH B2828 1555 1555 2.91 LINK K K B2703 O HOH B2849 1555 2545 3.35 LINK K K B2703 O HOH B2866 1555 1555 2.83 LINK K K B2703 O HOH B2877 1555 1555 3.00 LINK K K B2703 O HOH B2901 1555 1555 3.12 LINK K K B2703 O HOH B2938 1555 1555 2.83 LINK K K B2704 O HOH B2872 1555 1555 3.04 LINK K K B2704 O HOH B2923 1555 1555 2.87 SITE 1 AC1 6 G A2655 K A2704 HOH A2834 HOH A2875 SITE 2 AC1 6 HOH A2886 HOH A2894 SITE 1 AC2 6 HOH A2815 HOH A2836 HOH A2887 HOH A2922 SITE 2 AC2 6 HOH A2924 HOH A2925 SITE 1 AC3 5 HOH A2819 HOH A2875 HOH A2886 HOH A2933 SITE 2 AC3 5 HOH A2934 SITE 1 AC4 6 A A2654 G A2655 MG A2701 HOH A2834 SITE 2 AC4 6 HOH A2858 HOH A2894 SITE 1 AC5 2 A A2657 C A2658 SITE 1 AC6 6 G B2655 K B2703 HOH B2828 HOH B2893 SITE 2 AC6 6 HOH B2896 HOH B2901 SITE 1 AC7 6 HOH B2832 HOH B2834 HOH B2884 HOH B2926 SITE 2 AC7 6 HOH B2930 HOH B2931 SITE 1 AC8 7 A B2654 G B2655 MG B2701 HOH B2828 SITE 2 AC8 7 HOH B2866 HOH B2877 HOH B2938 SITE 1 AC9 4 A B2660 G B2661 HOH B2872 HOH B2923 CRYST1 53.170 23.960 63.820 90.00 108.74 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018808 0.000000 0.006382 0.00000 SCALE2 0.000000 0.041736 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016547 0.00000