HEADER OXIDOREDUCTASE 11-FEB-20 6Y12 TITLE ARGININE HYDROXYLASE VIOC IN COMPLEX WITH (3S)-OH-ARG, SUCCINATE AND TITLE 2 FE AFTER OXYGEN EXPOSURE USING FT-SSX METHODS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-KETOGLUTARATE-DEPENDENT L-ARGININE HYDROXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VIOMYCIN BIOSYNTHESIS PROTEIN C; COMPND 5 EC: 1.14.11.41; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES VINACEUS; SOURCE 3 ORGANISM_TAXID: 1960; SOURCE 4 GENE: VIOC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS IRON DEPENDENT OXYGENASE, ARGININE HYDROXYLASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.RABE,J.H.BEALE,P.A.LANG,A.S.DIRR,T.M.LEISSING,A.BUTRYN,P.ALLER, AUTHOR 2 J.J.A.G.KAMPS,D.AXFORD,M.A.MCDONOUGH,A.M.ORVILLE,R.OWEN, AUTHOR 3 C.J.SCHOFIELD REVDAT 4 24-JAN-24 6Y12 1 REMARK REVDAT 3 15-NOV-23 6Y12 1 ATOM REVDAT 2 30-SEP-20 6Y12 1 JRNL REVDAT 1 09-SEP-20 6Y12 0 JRNL AUTH P.RABE,J.H.BEALE,A.BUTRYN,P.ALLER,A.DIRR,P.A.LANG, JRNL AUTH 2 D.N.AXFORD,S.B.CARR,T.M.LEISSING,M.A.MCDONOUGH,B.DAVY, JRNL AUTH 3 A.EBRAHIM,J.ORLANS,S.L.S.STORM,A.M.ORVILLE,C.J.SCHOFIELD, JRNL AUTH 4 R.L.OWEN JRNL TITL ANAEROBIC FIXED-TARGET SERIAL CRYSTALLOGRAPHY. JRNL REF IUCRJ V. 7 901 2020 JRNL REFN ESSN 2052-2525 JRNL PMID 32939282 JRNL DOI 10.1107/S2052252520010374 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.336 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 36050 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.540 REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 60.0700 - 4.1000 1.00 2496 146 0.1600 0.1650 REMARK 3 2 4.1000 - 3.2500 1.00 2465 145 0.1500 0.1700 REMARK 3 3 3.2500 - 2.8400 1.00 2433 143 0.1700 0.2100 REMARK 3 4 2.8400 - 2.5800 1.00 2429 143 0.1700 0.2000 REMARK 3 5 2.5800 - 2.4000 1.00 2448 143 0.1800 0.2000 REMARK 3 6 2.4000 - 2.2500 1.00 2429 142 0.1800 0.2200 REMARK 3 7 2.2500 - 2.1400 1.00 2442 144 0.1800 0.2300 REMARK 3 8 2.1400 - 2.0500 1.00 2398 141 0.1900 0.2300 REMARK 3 9 2.0500 - 1.9700 1.00 2417 142 0.2000 0.2300 REMARK 3 10 1.9700 - 1.9000 1.00 2442 143 0.2200 0.2600 REMARK 3 11 1.9000 - 1.8400 1.00 2436 143 0.2500 0.2800 REMARK 3 12 1.8400 - 1.7900 1.00 2404 141 0.2700 0.3200 REMARK 3 13 1.7900 - 1.7400 1.00 2410 141 0.2900 0.3300 REMARK 3 14 1.7400 - 1.7010 0.99 2404 140 0.3100 0.3600 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2648 REMARK 3 ANGLE : 0.698 3618 REMARK 3 CHIRALITY : 0.045 396 REMARK 3 PLANARITY : 0.004 492 REMARK 3 DIHEDRAL : 10.563 1575 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8346 -16.4432 15.4270 REMARK 3 T TENSOR REMARK 3 T11: 0.1964 T22: 0.1414 REMARK 3 T33: 0.1253 T12: -0.0527 REMARK 3 T13: -0.0767 T23: 0.0323 REMARK 3 L TENSOR REMARK 3 L11: 1.7162 L22: 4.7475 REMARK 3 L33: 1.7493 L12: 0.7126 REMARK 3 L13: 0.5564 L23: -1.0758 REMARK 3 S TENSOR REMARK 3 S11: -0.0931 S12: -0.3051 S13: -0.6320 REMARK 3 S21: 0.3204 S22: 0.0282 S23: 0.3390 REMARK 3 S31: 0.4583 S32: -0.0103 S33: 0.1049 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0357 -11.6161 9.9967 REMARK 3 T TENSOR REMARK 3 T11: 0.2060 T22: 0.1436 REMARK 3 T33: 0.2089 T12: -0.0092 REMARK 3 T13: -0.0148 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.2370 L22: 0.8185 REMARK 3 L33: 1.9504 L12: 0.0060 REMARK 3 L13: 0.3907 L23: -0.3116 REMARK 3 S TENSOR REMARK 3 S11: 0.0412 S12: 0.0111 S13: -0.1144 REMARK 3 S21: -0.0504 S22: 0.0320 S23: 0.0453 REMARK 3 S31: 0.1927 S32: 0.0452 S33: -0.0558 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 100 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2956 -1.0380 17.7298 REMARK 3 T TENSOR REMARK 3 T11: 0.1506 T22: 0.1776 REMARK 3 T33: 0.1798 T12: -0.0126 REMARK 3 T13: 0.0060 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 0.7232 L22: 1.6285 REMARK 3 L33: 1.4612 L12: -0.6368 REMARK 3 L13: 0.5180 L23: -0.3202 REMARK 3 S TENSOR REMARK 3 S11: 0.0231 S12: -0.0015 S13: 0.0458 REMARK 3 S21: 0.1133 S22: -0.0210 S23: -0.1893 REMARK 3 S31: -0.0354 S32: 0.1262 S33: 0.0014 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 188 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3540 11.8581 20.7210 REMARK 3 T TENSOR REMARK 3 T11: 0.1305 T22: 0.1506 REMARK 3 T33: 0.1258 T12: 0.0033 REMARK 3 T13: 0.0300 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 5.8063 L22: 9.3778 REMARK 3 L33: 3.8500 L12: -6.8813 REMARK 3 L13: 4.3572 L23: -5.3355 REMARK 3 S TENSOR REMARK 3 S11: 0.0129 S12: -0.0514 S13: -0.3073 REMARK 3 S21: -0.0978 S22: 0.0570 S23: 0.4132 REMARK 3 S31: 0.0605 S32: -0.1002 S33: -0.1166 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 213 THROUGH 258 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2498 16.9692 12.5821 REMARK 3 T TENSOR REMARK 3 T11: 0.3122 T22: 0.3968 REMARK 3 T33: 0.3888 T12: -0.0300 REMARK 3 T13: -0.0026 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 8.5316 L22: 5.3767 REMARK 3 L33: 2.3027 L12: -3.4917 REMARK 3 L13: 0.7980 L23: -0.5056 REMARK 3 S TENSOR REMARK 3 S11: 0.0159 S12: 0.2044 S13: 0.5357 REMARK 3 S21: 0.1691 S22: -0.0528 S23: -1.1912 REMARK 3 S31: -0.1005 S32: 0.7949 S33: 0.0520 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 259 THROUGH 278 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3545 17.5008 14.8254 REMARK 3 T TENSOR REMARK 3 T11: 0.2218 T22: 0.1514 REMARK 3 T33: 0.1040 T12: -0.0039 REMARK 3 T13: 0.0194 T23: 0.0319 REMARK 3 L TENSOR REMARK 3 L11: 4.8893 L22: 8.7053 REMARK 3 L33: 2.7455 L12: 3.8086 REMARK 3 L13: 0.7849 L23: 2.7414 REMARK 3 S TENSOR REMARK 3 S11: -0.0216 S12: 0.1417 S13: 0.2018 REMARK 3 S21: 0.0027 S22: -0.1003 S23: 0.0476 REMARK 3 S31: -0.3673 S32: 0.2495 S33: 0.1217 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 279 THROUGH 295 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9345 20.4793 22.9209 REMARK 3 T TENSOR REMARK 3 T11: 0.1776 T22: 0.1365 REMARK 3 T33: 0.1253 T12: 0.0167 REMARK 3 T13: 0.0026 T23: -0.0527 REMARK 3 L TENSOR REMARK 3 L11: 8.4990 L22: 7.7959 REMARK 3 L33: 7.7068 L12: 4.1239 REMARK 3 L13: -2.8962 L23: -5.5417 REMARK 3 S TENSOR REMARK 3 S11: -0.1082 S12: 0.0082 S13: 0.2821 REMARK 3 S21: 0.3148 S22: 0.1257 S23: 0.2298 REMARK 3 S31: -0.3940 S32: -0.0900 S33: 0.0075 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 296 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5067 -1.4642 25.2622 REMARK 3 T TENSOR REMARK 3 T11: 0.1241 T22: 0.1249 REMARK 3 T33: 0.1282 T12: -0.0243 REMARK 3 T13: 0.0431 T23: 0.0266 REMARK 3 L TENSOR REMARK 3 L11: 3.9642 L22: 3.4478 REMARK 3 L33: 2.5391 L12: -2.8686 REMARK 3 L13: 2.9719 L23: -1.6193 REMARK 3 S TENSOR REMARK 3 S11: -0.0405 S12: -0.1203 S13: 0.0079 REMARK 3 S21: 0.1632 S22: -0.0064 S23: 0.0610 REMARK 3 S31: 0.0690 S32: -0.0087 S33: 0.0552 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 331 THROUGH 356 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2941 1.4695 5.2570 REMARK 3 T TENSOR REMARK 3 T11: 0.1889 T22: 0.2443 REMARK 3 T33: 0.1736 T12: 0.0149 REMARK 3 T13: 0.0455 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 1.2477 L22: 3.6289 REMARK 3 L33: 3.8094 L12: -1.1981 REMARK 3 L13: 2.1423 L23: -2.8574 REMARK 3 S TENSOR REMARK 3 S11: 0.0225 S12: 0.3432 S13: 0.0658 REMARK 3 S21: -0.3080 S22: -0.2723 S23: -0.2641 REMARK 3 S31: -0.1874 S32: 0.5955 S33: 0.2411 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Y12 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292105375. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96863 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 1.8 REMARK 200 DATA SCALING SOFTWARE : DIALS 1.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36065 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 60.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 62.41 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.340 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2WBO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M MGCL2, 26% PEG550, 0.1M HEPES, REMARK 280 PH 7.5, BATCH MODE, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 41.18450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.56250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 41.18450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.56250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 696 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 SER A 4 REMARK 465 PRO A 5 REMARK 465 THR A 6 REMARK 465 THR A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 GLY A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 PRO A 13 REMARK 465 PRO A 14 REMARK 465 ASP A 15 REMARK 465 SER A 16 REMARK 465 VAL A 17 REMARK 465 ALA A 18 REMARK 465 THR A 19 REMARK 465 PRO A 20 REMARK 465 THR A 232 REMARK 465 ALA A 233 REMARK 465 GLN A 234 REMARK 465 GLN A 235 REMARK 465 GLY A 236 REMARK 465 ARG A 237 REMARK 465 GLN A 357 REMARK 465 ARG A 358 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 21 CG1 CG2 REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 43 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 46 CD OE1 NE2 REMARK 470 ARG A 47 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 66 OE1 OE2 REMARK 470 ARG A 69 NH1 REMARK 470 ARG A 107 CD NE CZ NH1 NH2 REMARK 470 LYS A 150 CE NZ REMARK 470 ARG A 207 NE CZ NH1 NH2 REMARK 470 ILE A 219 CD1 REMARK 470 LEU A 226 CD1 REMARK 470 GLN A 227 CD OE1 NE2 REMARK 470 VAL A 228 CG1 REMARK 470 VAL A 238 CB CG1 CG2 REMARK 470 GLU A 241 CD OE1 OE2 REMARK 470 ALA A 244 CB REMARK 470 GLN A 245 CG CD OE1 NE2 REMARK 470 ALA A 246 CB REMARK 470 ASP A 248 CG OD1 OD2 REMARK 470 ARG A 249 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 251 CG CD OE1 OE2 REMARK 470 ARG A 260 NH1 REMARK 470 GLU A 276 CG CD OE1 OE2 REMARK 470 ARG A 289 NH1 REMARK 470 LYS A 290 CE NZ REMARK 470 ARG A 343 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 345 NH1 REMARK 470 LYS A 346 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 161 -68.64 -154.95 REMARK 500 ASN A 188 63.63 -159.25 REMARK 500 ALA A 262 65.27 -155.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 402 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 168 NE2 REMARK 620 2 GLU A 170 OE1 95.4 REMARK 620 3 HIS A 316 NE2 99.3 95.5 REMARK 620 4 SIN A 401 O3 147.0 109.2 99.8 REMARK 620 5 SIN A 401 O4 98.3 166.0 85.3 57.0 REMARK 620 6 ZZU A 403 OB 71.6 83.5 170.6 89.3 97.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SIN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZZU A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6ALR RELATED DB: PDB REMARK 900 RELATED ID: 2WBO RELATED DB: PDB DBREF 6Y12 A 1 358 UNP Q6WZB0 ARGHX_STRVI 1 358 SEQRES 1 A 358 MET THR GLU SER PRO THR THR HIS HIS GLY ALA ALA PRO SEQRES 2 A 358 PRO ASP SER VAL ALA THR PRO VAL ARG PRO TRP SER GLU SEQRES 3 A 358 PHE ARG LEU THR PRO ALA GLU ALA ALA ALA ALA ALA ALA SEQRES 4 A 358 LEU ALA ALA ARG CYS ALA GLN ARG TYR ASP GLU THR ASP SEQRES 5 A 358 GLY PRO GLU PHE LEU LEU ASP ALA PRO VAL ILE ALA HIS SEQRES 6 A 358 GLU LEU PRO ARG ARG LEU ARG THR PHE MET ALA ARG ALA SEQRES 7 A 358 ARG LEU ASP ALA TRP PRO HIS ALA LEU VAL VAL ARG GLY SEQRES 8 A 358 ASN PRO VAL ASP ASP ALA ALA LEU GLY SER THR PRO VAL SEQRES 9 A 358 HIS TRP ARG THR ALA ARG THR PRO GLY SER ARG PRO LEU SEQRES 10 A 358 SER PHE LEU LEU MET LEU TYR ALA GLY LEU LEU GLY ASP SEQRES 11 A 358 VAL PHE GLY TRP ALA THR GLN GLN ASP GLY ARG VAL VAL SEQRES 12 A 358 THR ASP VAL LEU PRO ILE LYS GLY GLY GLU HIS THR LEU SEQRES 13 A 358 VAL SER SER SER SER ARG GLN GLU LEU GLY TRP HIS THR SEQRES 14 A 358 GLU ASP ALA PHE SER PRO TYR ARG ALA ASP TYR VAL GLY SEQRES 15 A 358 LEU LEU SER LEU ARG ASN PRO ASP GLY VAL ALA THR THR SEQRES 16 A 358 LEU ALA GLY VAL PRO LEU ASP ASP LEU ASP GLU ARG THR SEQRES 17 A 358 LEU ASP VAL LEU PHE GLN GLU ARG PHE LEU ILE ARG PRO SEQRES 18 A 358 ASP ASP SER HIS LEU GLN VAL ASN ASN SER THR ALA GLN SEQRES 19 A 358 GLN GLY ARG VAL GLU PHE GLU GLY ILE ALA GLN ALA ALA SEQRES 20 A 358 ASP ARG PRO GLU PRO VAL ALA ILE LEU THR GLY HIS ARG SEQRES 21 A 358 ALA ALA PRO HIS LEU ARG VAL ASP GLY ASP PHE SER ALA SEQRES 22 A 358 PRO ALA GLU GLY ASP GLU GLU ALA ALA ALA ALA LEU GLY SEQRES 23 A 358 THR LEU ARG LYS LEU ILE ASP ALA SER LEU TYR GLU LEU SEQRES 24 A 358 VAL LEU ASP GLN GLY ASP VAL ALA PHE ILE ASP ASN ARG SEQRES 25 A 358 ARG ALA VAL HIS GLY ARG ARG ALA PHE GLN PRO ARG TYR SEQRES 26 A 358 ASP GLY ARG ASP ARG TRP LEU LYS ARG ILE ASN ILE THR SEQRES 27 A 358 ARG ASP LEU HIS ARG SER ARG LYS ALA TRP ALA GLY ASP SEQRES 28 A 358 SER ARG VAL LEU GLY GLN ARG HET SIN A 401 12 HET FE A 402 1 HET ZZU A 403 27 HETNAM SIN SUCCINIC ACID HETNAM FE FE (III) ION HETNAM ZZU (2S,3S)-3-HYDROXYARGININE FORMUL 2 SIN C4 H6 O4 FORMUL 3 FE FE 3+ FORMUL 4 ZZU C6 H14 N4 O3 FORMUL 5 HOH *202(H2 O) HELIX 1 AA1 THR A 30 TYR A 48 1 19 HELIX 2 AA2 GLY A 53 ALA A 64 1 12 HELIX 3 AA3 HIS A 65 LEU A 67 5 3 HELIX 4 AA4 PRO A 68 ARG A 79 1 12 HELIX 5 AA5 ASP A 95 GLY A 100 1 6 HELIX 6 AA6 SER A 114 LEU A 127 1 14 HELIX 7 AA7 GLN A 137 ARG A 141 5 5 HELIX 8 AA8 ASP A 205 PHE A 213 1 9 HELIX 9 AA9 ASP A 222 ASN A 230 5 9 HELIX 10 AB1 GLU A 239 ARG A 249 1 11 HELIX 11 AB2 ASP A 278 LEU A 296 1 19 HELIX 12 AB3 ASP A 340 TRP A 348 5 9 SHEET 1 AA1 6 SER A 25 ARG A 28 0 SHEET 2 AA1 6 ALA A 86 ARG A 90 1 O VAL A 88 N SER A 25 SHEET 3 AA1 6 VAL A 306 ASP A 310 -1 O VAL A 306 N VAL A 89 SHEET 4 AA1 6 TYR A 180 ARG A 187 -1 N VAL A 181 O ILE A 309 SHEET 5 AA1 6 TRP A 331 THR A 338 -1 O ILE A 335 N GLY A 182 SHEET 6 AA1 6 THR A 144 VAL A 146 -1 N VAL A 146 O LEU A 332 SHEET 1 AA2 7 SER A 25 ARG A 28 0 SHEET 2 AA2 7 ALA A 86 ARG A 90 1 O VAL A 88 N SER A 25 SHEET 3 AA2 7 VAL A 306 ASP A 310 -1 O VAL A 306 N VAL A 89 SHEET 4 AA2 7 TYR A 180 ARG A 187 -1 N VAL A 181 O ILE A 309 SHEET 5 AA2 7 TRP A 331 THR A 338 -1 O ILE A 335 N GLY A 182 SHEET 6 AA2 7 ASP A 130 TRP A 134 -1 N ASP A 130 O THR A 338 SHEET 7 AA2 7 VAL A 354 LEU A 355 1 O LEU A 355 N GLY A 133 SHEET 1 AA3 4 LEU A 165 HIS A 168 0 SHEET 2 AA3 4 ALA A 314 ARG A 318 -1 O ARG A 318 N LEU A 165 SHEET 3 AA3 4 ALA A 193 GLY A 198 -1 N ALA A 197 O VAL A 315 SHEET 4 AA3 4 TYR A 297 VAL A 300 -1 O LEU A 299 N THR A 194 SHEET 1 AA4 2 PHE A 217 ILE A 219 0 SHEET 2 AA4 2 SER A 272 PRO A 274 -1 O ALA A 273 N LEU A 218 SHEET 1 AA5 2 LEU A 256 HIS A 259 0 SHEET 2 AA5 2 ALA A 262 LEU A 265 -1 O HIS A 264 N THR A 257 LINK NE2 HIS A 168 FE FE A 402 1555 1555 2.18 LINK OE1 GLU A 170 FE FE A 402 1555 1555 2.00 LINK NE2 HIS A 316 FE FE A 402 1555 1555 1.99 LINK O3 SIN A 401 FE FE A 402 1555 1555 2.28 LINK O4 SIN A 401 FE FE A 402 1555 1555 2.25 LINK FE FE A 402 OB ZZU A 403 1555 1555 2.56 SITE 1 AC1 12 VAL A 146 LEU A 165 HIS A 168 GLU A 170 SITE 2 AC1 12 THR A 194 HIS A 316 ARG A 330 LEU A 332 SITE 3 AC1 12 ARG A 334 FE A 402 ZZU A 403 HOH A 521 SITE 1 AC2 5 HIS A 168 GLU A 170 HIS A 316 SIN A 401 SITE 2 AC2 5 ZZU A 403 SITE 1 AC3 16 GLN A 137 LEU A 156 VAL A 157 SER A 158 SITE 2 AC3 16 LEU A 165 HIS A 168 GLU A 170 ASP A 222 SITE 3 AC3 16 SER A 224 ASP A 268 ASP A 270 ARG A 334 SITE 4 AC3 16 SIN A 401 FE A 402 HOH A 506 HOH A 529 CRYST1 82.369 67.125 63.984 90.00 110.15 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012140 0.000000 0.004455 0.00000 SCALE2 0.000000 0.014898 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016648 0.00000