HEADER TRANSFERASE 14-FEB-20 6Y23 TITLE DDR1 KINASE AUTOINHIBITED BY ITS JUXTAMEMBRANE REGION COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPITHELIAL DISCOIDIN DOMAIN-CONTAINING RECEPTOR 1; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: EPITHELIAL DISCOIDIN DOMAIN RECEPTOR 1,CD167 ANTIGEN-LIKE COMPND 5 FAMILY MEMBER A,CELL ADHESION KINASE,DISCOIDIN RECEPTOR TYROSINE COMPND 6 KINASE,HGK2,MAMMARY CARCINOMA KINASE 10,MCK-10,PROTEIN-TYROSINE COMPND 7 KINASE 3A,PROTEIN-TYROSINE KINASE RTK-6,TRK E,TYROSINE KINASE DDR, COMPND 8 TYROSINE-PROTEIN KINASE CAK; COMPND 9 EC: 2.7.10.1; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: VECTOR DERIVED GP AT N-TERMINUS, Y569F AND Y586F COMPND 12 MUTATIONS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDR1, CAK, EDDR1, NEP, NTRK4, PTK3A, RTK6, TRKE; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS KINASE, COLLAGEN, CELL SIGNALLING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.SAMMON,E.HOHENESTER,B.LEITINGER REVDAT 3 24-JAN-24 6Y23 1 REMARK REVDAT 2 16-SEP-20 6Y23 1 JRNL REVDAT 1 02-SEP-20 6Y23 0 JRNL AUTH D.SAMMON,E.HOHENESTER,B.LEITINGER JRNL TITL TWO-STEP RELEASE OF KINASE AUTOINHIBITION IN DISCOIDIN JRNL TITL 2 DOMAIN RECEPTOR 1. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 22051 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32839343 JRNL DOI 10.1073/PNAS.2007271117 REMARK 2 REMARK 2 RESOLUTION. 2.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18RC1_3769 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 43355 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2174 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.4200 - 6.4900 0.99 2885 156 0.2272 0.2598 REMARK 3 2 6.4900 - 5.1600 1.00 2671 145 0.2199 0.2714 REMARK 3 3 5.1600 - 4.5000 1.00 2636 141 0.1910 0.2442 REMARK 3 4 4.5000 - 4.0900 1.00 2567 159 0.1729 0.2167 REMARK 3 5 4.0900 - 3.8000 1.00 2593 124 0.2014 0.2666 REMARK 3 6 3.8000 - 3.5800 1.00 2561 140 0.2036 0.2538 REMARK 3 7 3.5800 - 3.4000 1.00 2541 128 0.2125 0.2623 REMARK 3 8 3.4000 - 3.2500 1.00 2579 142 0.2325 0.2439 REMARK 3 9 3.2500 - 3.1200 1.00 2520 148 0.2380 0.3205 REMARK 3 10 3.1200 - 3.0200 1.00 2535 125 0.2566 0.3118 REMARK 3 11 3.0200 - 2.9200 1.00 2509 144 0.2655 0.3075 REMARK 3 12 2.9200 - 2.8400 1.00 2531 132 0.2762 0.2975 REMARK 3 13 2.8400 - 2.7600 1.00 2500 133 0.2784 0.3217 REMARK 3 14 2.7600 - 2.7000 1.00 2537 117 0.2981 0.3384 REMARK 3 15 2.7000 - 2.6300 1.00 2528 111 0.2993 0.3482 REMARK 3 16 2.6300 - 2.5800 0.99 2488 129 0.3096 0.3377 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.749 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7374 REMARK 3 ANGLE : 0.537 9999 REMARK 3 CHIRALITY : 0.039 1093 REMARK 3 PLANARITY : 0.004 1299 REMARK 3 DIHEDRAL : 14.644 2716 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Y23 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292106748. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43468 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.580 REMARK 200 RESOLUTION RANGE LOW (A) : 58.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 20.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5BVW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9.5 MG/ML PROTEIN IN 20 MM HEPES PH REMARK 280 7.5, 200 MM NACL, 1 MM TCEP. PRECIPITANT: 100 MM TRIS PH 8.0, REMARK 280 1.5 M AMMONIUM SULPHATE., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 203.46950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 203.46950 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 203.46950 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 203.46950 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 203.46950 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 203.46950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 564 REMARK 465 PRO A 565 REMARK 465 VAL A 566 REMARK 465 PRO A 567 REMARK 465 HIS A 568 REMARK 465 PHE A 569 REMARK 465 ALA A 570 REMARK 465 GLU A 571 REMARK 465 ALA A 572 REMARK 465 ASP A 573 REMARK 465 VAL A 596 REMARK 465 GLY A 597 REMARK 465 LEU A 635 REMARK 465 VAL A 636 REMARK 465 SER A 637 REMARK 465 LEU A 638 REMARK 465 ASP A 639 REMARK 465 PHE A 640 REMARK 465 PRO A 641 REMARK 465 LEU A 642 REMARK 465 ASN A 643 REMARK 465 VAL A 644 REMARK 465 LYS A 721 REMARK 465 ALA A 722 REMARK 465 ALA A 723 REMARK 465 GLU A 724 REMARK 465 GLY A 725 REMARK 465 ALA A 726 REMARK 465 PRO A 727 REMARK 465 GLY A 728 REMARK 465 ASP A 729 REMARK 465 GLY A 730 REMARK 465 GLN A 731 REMARK 465 ALA A 732 REMARK 465 ALA A 733 REMARK 465 GLN A 734 REMARK 465 GLN A 800 REMARK 465 GLY A 801 REMARK 465 ARG A 802 REMARK 465 ASP A 908 REMARK 465 ALA A 909 REMARK 465 LEU A 910 REMARK 465 ASN A 911 REMARK 465 THR A 912 REMARK 465 VAL A 913 REMARK 465 GLY B 564 REMARK 465 PRO B 565 REMARK 465 VAL B 566 REMARK 465 PRO B 567 REMARK 465 HIS B 568 REMARK 465 PHE B 569 REMARK 465 ALA B 570 REMARK 465 GLU B 571 REMARK 465 ALA B 572 REMARK 465 ASP B 573 REMARK 465 PRO B 593 REMARK 465 GLY B 594 REMARK 465 ALA B 595 REMARK 465 VAL B 596 REMARK 465 GLY B 597 REMARK 465 ASP B 598 REMARK 465 VAL B 636 REMARK 465 SER B 637 REMARK 465 LEU B 638 REMARK 465 ASP B 639 REMARK 465 PHE B 640 REMARK 465 PRO B 641 REMARK 465 LEU B 642 REMARK 465 ASN B 643 REMARK 465 VAL B 644 REMARK 465 ARG B 645 REMARK 465 LYS B 646 REMARK 465 LYS B 721 REMARK 465 ALA B 722 REMARK 465 ALA B 723 REMARK 465 GLU B 724 REMARK 465 GLY B 725 REMARK 465 ALA B 726 REMARK 465 PRO B 727 REMARK 465 GLY B 728 REMARK 465 ASP B 729 REMARK 465 GLY B 730 REMARK 465 GLN B 731 REMARK 465 ALA B 732 REMARK 465 ALA B 733 REMARK 465 GLN B 734 REMARK 465 VAL B 799 REMARK 465 GLN B 800 REMARK 465 GLY B 801 REMARK 465 ARG B 802 REMARK 465 ALA B 803 REMARK 465 ASN B 911 REMARK 465 THR B 912 REMARK 465 VAL B 913 REMARK 465 GLY C 564 REMARK 465 PRO C 565 REMARK 465 VAL C 566 REMARK 465 PRO C 567 REMARK 465 HIS C 568 REMARK 465 PHE C 569 REMARK 465 ALA C 570 REMARK 465 GLU C 571 REMARK 465 ALA C 572 REMARK 465 ASP C 573 REMARK 465 ASP C 634 REMARK 465 LEU C 635 REMARK 465 VAL C 636 REMARK 465 SER C 637 REMARK 465 LEU C 638 REMARK 465 ASP C 639 REMARK 465 PHE C 640 REMARK 465 PRO C 641 REMARK 465 LEU C 642 REMARK 465 ASN C 643 REMARK 465 VAL C 644 REMARK 465 ARG C 645 REMARK 465 LYS C 646 REMARK 465 GLY C 647 REMARK 465 HIS C 648 REMARK 465 LYS C 721 REMARK 465 ALA C 722 REMARK 465 ALA C 723 REMARK 465 GLU C 724 REMARK 465 GLY C 725 REMARK 465 ALA C 726 REMARK 465 PRO C 727 REMARK 465 GLY C 728 REMARK 465 ASP C 729 REMARK 465 GLY C 730 REMARK 465 GLN C 731 REMARK 465 ALA C 732 REMARK 465 ALA C 733 REMARK 465 VAL C 799 REMARK 465 GLN C 800 REMARK 465 GLY C 801 REMARK 465 ARG C 802 REMARK 465 ALA C 803 REMARK 465 THR C 912 REMARK 465 VAL C 913 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 598 CG OD1 OD2 REMARK 470 ARG A 602 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 611 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 645 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 646 CG CD CE NZ REMARK 470 HIS A 648 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 798 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 799 CG1 CG2 REMARK 470 ARG B 602 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 717 CG CD OE1 NE2 REMARK 470 ASN B 777 CG OD1 ND2 REMARK 470 GLU B 907 CG CD OE1 OE2 REMARK 470 ARG C 602 CG CD NE CZ NH1 NH2 REMARK 470 ASN C 911 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H GLY A 647 O4 SO4 A 1005 1.49 REMARK 500 HE ARG A 841 O4 SO4 A 1003 1.51 REMARK 500 HE ARG C 755 O4 SO4 C 1001 1.58 REMARK 500 OE1 GLN B 894 O HOH B 1101 2.07 REMARK 500 NH1 ARG A 609 O ASP A 630 2.08 REMARK 500 NH1 ARG C 611 OD2 ASP C 630 2.09 REMARK 500 NH1 ARG C 841 O1 SO4 C 1002 2.12 REMARK 500 O2 SO4 C 1002 O HOH C 1101 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 660 32.14 -87.86 REMARK 500 ARG A 765 2.43 80.69 REMARK 500 ASP A 766 42.26 -156.20 REMARK 500 ALA A 783 -158.95 -140.31 REMARK 500 ASP A 784 34.86 -155.89 REMARK 500 PRO B 589 -165.60 -71.03 REMARK 500 PRO B 606 95.97 -67.94 REMARK 500 LYS B 613 -50.46 -124.74 REMARK 500 ARG B 765 -6.10 80.00 REMARK 500 ASP B 766 45.43 -146.13 REMARK 500 ALA B 768 161.05 176.81 REMARK 500 ASP B 784 24.01 -143.70 REMARK 500 ALA B 875 21.82 -79.43 REMARK 500 GLU B 907 -112.42 59.69 REMARK 500 PRO C 589 -176.34 -67.55 REMARK 500 VAL C 596 -159.11 -132.82 REMARK 500 LYS C 613 -40.16 -130.84 REMARK 500 PRO C 632 76.30 -66.36 REMARK 500 ARG C 765 2.61 81.25 REMARK 500 ASP C 766 37.66 -154.20 REMARK 500 ASP C 784 29.72 -146.38 REMARK 500 GLU C 907 -72.45 -127.18 REMARK 500 ASP C 908 49.09 -76.14 REMARK 500 ALA C 909 -41.74 -157.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 1002 DBREF 6Y23 A 566 913 UNP Q08345 DDR1_HUMAN 566 913 DBREF 6Y23 B 566 913 UNP Q08345 DDR1_HUMAN 566 913 DBREF 6Y23 C 566 913 UNP Q08345 DDR1_HUMAN 566 913 SEQADV 6Y23 GLY A 564 UNP Q08345 EXPRESSION TAG SEQADV 6Y23 PRO A 565 UNP Q08345 EXPRESSION TAG SEQADV 6Y23 PHE A 569 UNP Q08345 TYR 569 ENGINEERED MUTATION SEQADV 6Y23 PHE A 586 UNP Q08345 TYR 586 ENGINEERED MUTATION SEQADV 6Y23 GLY B 564 UNP Q08345 EXPRESSION TAG SEQADV 6Y23 PRO B 565 UNP Q08345 EXPRESSION TAG SEQADV 6Y23 PHE B 569 UNP Q08345 TYR 569 ENGINEERED MUTATION SEQADV 6Y23 PHE B 586 UNP Q08345 TYR 586 ENGINEERED MUTATION SEQADV 6Y23 GLY C 564 UNP Q08345 EXPRESSION TAG SEQADV 6Y23 PRO C 565 UNP Q08345 EXPRESSION TAG SEQADV 6Y23 PHE C 569 UNP Q08345 TYR 569 ENGINEERED MUTATION SEQADV 6Y23 PHE C 586 UNP Q08345 TYR 586 ENGINEERED MUTATION SEQRES 1 A 350 GLY PRO VAL PRO HIS PHE ALA GLU ALA ASP ILE VAL THR SEQRES 2 A 350 LEU GLN GLY VAL THR GLY GLY ASN THR PHE ALA VAL PRO SEQRES 3 A 350 ALA LEU PRO PRO GLY ALA VAL GLY ASP GLY PRO PRO ARG SEQRES 4 A 350 VAL ASP PHE PRO ARG SER ARG LEU ARG PHE LYS GLU LYS SEQRES 5 A 350 LEU GLY GLU GLY GLN PHE GLY GLU VAL HIS LEU CYS GLU SEQRES 6 A 350 VAL ASP SER PRO GLN ASP LEU VAL SER LEU ASP PHE PRO SEQRES 7 A 350 LEU ASN VAL ARG LYS GLY HIS PRO LEU LEU VAL ALA VAL SEQRES 8 A 350 LYS ILE LEU ARG PRO ASP ALA THR LYS ASN ALA ARG ASN SEQRES 9 A 350 ASP PHE LEU LYS GLU VAL LYS ILE MET SER ARG LEU LYS SEQRES 10 A 350 ASP PRO ASN ILE ILE ARG LEU LEU GLY VAL CYS VAL GLN SEQRES 11 A 350 ASP ASP PRO LEU CYS MET ILE THR ASP TYR MET GLU ASN SEQRES 12 A 350 GLY ASP LEU ASN GLN PHE LEU SER ALA HIS GLN LEU GLU SEQRES 13 A 350 ASP LYS ALA ALA GLU GLY ALA PRO GLY ASP GLY GLN ALA SEQRES 14 A 350 ALA GLN GLY PRO THR ILE SER TYR PRO MET LEU LEU HIS SEQRES 15 A 350 VAL ALA ALA GLN ILE ALA SER GLY MET ARG TYR LEU ALA SEQRES 16 A 350 THR LEU ASN PHE VAL HIS ARG ASP LEU ALA THR ARG ASN SEQRES 17 A 350 CYS LEU VAL GLY GLU ASN PHE THR ILE LYS ILE ALA ASP SEQRES 18 A 350 PHE GLY MET SER ARG ASN LEU TYR ALA GLY ASP TYR TYR SEQRES 19 A 350 ARG VAL GLN GLY ARG ALA VAL LEU PRO ILE ARG TRP MET SEQRES 20 A 350 ALA TRP GLU CYS ILE LEU MET GLY LYS PHE THR THR ALA SEQRES 21 A 350 SER ASP VAL TRP ALA PHE GLY VAL THR LEU TRP GLU VAL SEQRES 22 A 350 LEU MET LEU CYS ARG ALA GLN PRO PHE GLY GLN LEU THR SEQRES 23 A 350 ASP GLU GLN VAL ILE GLU ASN ALA GLY GLU PHE PHE ARG SEQRES 24 A 350 ASP GLN GLY ARG GLN VAL TYR LEU SER ARG PRO PRO ALA SEQRES 25 A 350 CYS PRO GLN GLY LEU TYR GLU LEU MET LEU ARG CYS TRP SEQRES 26 A 350 SER ARG GLU SER GLU GLN ARG PRO PRO PHE SER GLN LEU SEQRES 27 A 350 HIS ARG PHE LEU ALA GLU ASP ALA LEU ASN THR VAL SEQRES 1 B 350 GLY PRO VAL PRO HIS PHE ALA GLU ALA ASP ILE VAL THR SEQRES 2 B 350 LEU GLN GLY VAL THR GLY GLY ASN THR PHE ALA VAL PRO SEQRES 3 B 350 ALA LEU PRO PRO GLY ALA VAL GLY ASP GLY PRO PRO ARG SEQRES 4 B 350 VAL ASP PHE PRO ARG SER ARG LEU ARG PHE LYS GLU LYS SEQRES 5 B 350 LEU GLY GLU GLY GLN PHE GLY GLU VAL HIS LEU CYS GLU SEQRES 6 B 350 VAL ASP SER PRO GLN ASP LEU VAL SER LEU ASP PHE PRO SEQRES 7 B 350 LEU ASN VAL ARG LYS GLY HIS PRO LEU LEU VAL ALA VAL SEQRES 8 B 350 LYS ILE LEU ARG PRO ASP ALA THR LYS ASN ALA ARG ASN SEQRES 9 B 350 ASP PHE LEU LYS GLU VAL LYS ILE MET SER ARG LEU LYS SEQRES 10 B 350 ASP PRO ASN ILE ILE ARG LEU LEU GLY VAL CYS VAL GLN SEQRES 11 B 350 ASP ASP PRO LEU CYS MET ILE THR ASP TYR MET GLU ASN SEQRES 12 B 350 GLY ASP LEU ASN GLN PHE LEU SER ALA HIS GLN LEU GLU SEQRES 13 B 350 ASP LYS ALA ALA GLU GLY ALA PRO GLY ASP GLY GLN ALA SEQRES 14 B 350 ALA GLN GLY PRO THR ILE SER TYR PRO MET LEU LEU HIS SEQRES 15 B 350 VAL ALA ALA GLN ILE ALA SER GLY MET ARG TYR LEU ALA SEQRES 16 B 350 THR LEU ASN PHE VAL HIS ARG ASP LEU ALA THR ARG ASN SEQRES 17 B 350 CYS LEU VAL GLY GLU ASN PHE THR ILE LYS ILE ALA ASP SEQRES 18 B 350 PHE GLY MET SER ARG ASN LEU TYR ALA GLY ASP TYR TYR SEQRES 19 B 350 ARG VAL GLN GLY ARG ALA VAL LEU PRO ILE ARG TRP MET SEQRES 20 B 350 ALA TRP GLU CYS ILE LEU MET GLY LYS PHE THR THR ALA SEQRES 21 B 350 SER ASP VAL TRP ALA PHE GLY VAL THR LEU TRP GLU VAL SEQRES 22 B 350 LEU MET LEU CYS ARG ALA GLN PRO PHE GLY GLN LEU THR SEQRES 23 B 350 ASP GLU GLN VAL ILE GLU ASN ALA GLY GLU PHE PHE ARG SEQRES 24 B 350 ASP GLN GLY ARG GLN VAL TYR LEU SER ARG PRO PRO ALA SEQRES 25 B 350 CYS PRO GLN GLY LEU TYR GLU LEU MET LEU ARG CYS TRP SEQRES 26 B 350 SER ARG GLU SER GLU GLN ARG PRO PRO PHE SER GLN LEU SEQRES 27 B 350 HIS ARG PHE LEU ALA GLU ASP ALA LEU ASN THR VAL SEQRES 1 C 350 GLY PRO VAL PRO HIS PHE ALA GLU ALA ASP ILE VAL THR SEQRES 2 C 350 LEU GLN GLY VAL THR GLY GLY ASN THR PHE ALA VAL PRO SEQRES 3 C 350 ALA LEU PRO PRO GLY ALA VAL GLY ASP GLY PRO PRO ARG SEQRES 4 C 350 VAL ASP PHE PRO ARG SER ARG LEU ARG PHE LYS GLU LYS SEQRES 5 C 350 LEU GLY GLU GLY GLN PHE GLY GLU VAL HIS LEU CYS GLU SEQRES 6 C 350 VAL ASP SER PRO GLN ASP LEU VAL SER LEU ASP PHE PRO SEQRES 7 C 350 LEU ASN VAL ARG LYS GLY HIS PRO LEU LEU VAL ALA VAL SEQRES 8 C 350 LYS ILE LEU ARG PRO ASP ALA THR LYS ASN ALA ARG ASN SEQRES 9 C 350 ASP PHE LEU LYS GLU VAL LYS ILE MET SER ARG LEU LYS SEQRES 10 C 350 ASP PRO ASN ILE ILE ARG LEU LEU GLY VAL CYS VAL GLN SEQRES 11 C 350 ASP ASP PRO LEU CYS MET ILE THR ASP TYR MET GLU ASN SEQRES 12 C 350 GLY ASP LEU ASN GLN PHE LEU SER ALA HIS GLN LEU GLU SEQRES 13 C 350 ASP LYS ALA ALA GLU GLY ALA PRO GLY ASP GLY GLN ALA SEQRES 14 C 350 ALA GLN GLY PRO THR ILE SER TYR PRO MET LEU LEU HIS SEQRES 15 C 350 VAL ALA ALA GLN ILE ALA SER GLY MET ARG TYR LEU ALA SEQRES 16 C 350 THR LEU ASN PHE VAL HIS ARG ASP LEU ALA THR ARG ASN SEQRES 17 C 350 CYS LEU VAL GLY GLU ASN PHE THR ILE LYS ILE ALA ASP SEQRES 18 C 350 PHE GLY MET SER ARG ASN LEU TYR ALA GLY ASP TYR TYR SEQRES 19 C 350 ARG VAL GLN GLY ARG ALA VAL LEU PRO ILE ARG TRP MET SEQRES 20 C 350 ALA TRP GLU CYS ILE LEU MET GLY LYS PHE THR THR ALA SEQRES 21 C 350 SER ASP VAL TRP ALA PHE GLY VAL THR LEU TRP GLU VAL SEQRES 22 C 350 LEU MET LEU CYS ARG ALA GLN PRO PHE GLY GLN LEU THR SEQRES 23 C 350 ASP GLU GLN VAL ILE GLU ASN ALA GLY GLU PHE PHE ARG SEQRES 24 C 350 ASP GLN GLY ARG GLN VAL TYR LEU SER ARG PRO PRO ALA SEQRES 25 C 350 CYS PRO GLN GLY LEU TYR GLU LEU MET LEU ARG CYS TRP SEQRES 26 C 350 SER ARG GLU SER GLU GLN ARG PRO PRO PHE SER GLN LEU SEQRES 27 C 350 HIS ARG PHE LEU ALA GLU ASP ALA LEU ASN THR VAL HET SO4 A1001 5 HET SO4 A1002 5 HET SO4 A1003 5 HET SO4 A1004 5 HET SO4 A1005 5 HET SO4 B1001 5 HET SO4 C1001 5 HET SO4 C1002 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 8(O4 S 2-) FORMUL 12 HOH *40(H2 O) HELIX 1 AA1 PRO A 606 LEU A 610 5 5 HELIX 2 AA2 THR A 662 LEU A 679 1 18 HELIX 3 AA3 ASP A 708 SER A 714 1 7 HELIX 4 AA4 SER A 739 LEU A 760 1 22 HELIX 5 AA5 ALA A 768 ARG A 770 5 3 HELIX 6 AA6 GLU A 776 PHE A 778 5 3 HELIX 7 AA7 PHE A 785 TYR A 796 5 12 HELIX 8 AA8 PRO A 806 MET A 810 5 5 HELIX 9 AA9 ALA A 811 GLY A 818 1 8 HELIX 10 AB1 THR A 821 MET A 838 1 18 HELIX 11 AB2 THR A 849 ASP A 863 1 15 HELIX 12 AB3 PRO A 877 CYS A 887 1 11 HELIX 13 AB4 GLU A 891 ARG A 895 5 5 HELIX 14 AB5 PRO A 897 GLU A 907 1 11 HELIX 15 AB6 PRO B 606 SER B 608 5 3 HELIX 16 AB7 THR B 662 SER B 677 1 16 HELIX 17 AB8 ASP B 708 ALA B 715 1 8 HELIX 18 AB9 SER B 739 LEU B 760 1 22 HELIX 19 AC1 ALA B 768 ARG B 770 5 3 HELIX 20 AC2 PHE B 785 TYR B 796 5 12 HELIX 21 AC3 PRO B 806 MET B 810 5 5 HELIX 22 AC4 ALA B 811 GLY B 818 1 8 HELIX 23 AC5 THR B 821 MET B 838 1 18 HELIX 24 AC6 THR B 849 ASP B 863 1 15 HELIX 25 AC7 PRO B 877 TRP B 888 1 12 HELIX 26 AC8 GLU B 891 ARG B 895 5 5 HELIX 27 AC9 PRO B 897 ALA B 906 1 10 HELIX 28 AD1 PRO C 606 SER C 608 5 3 HELIX 29 AD2 THR C 662 ARG C 678 1 17 HELIX 30 AD3 ASP C 708 SER C 714 1 7 HELIX 31 AD4 SER C 739 LEU C 760 1 22 HELIX 32 AD5 ALA C 768 ARG C 770 5 3 HELIX 33 AD6 GLU C 776 PHE C 778 5 3 HELIX 34 AD7 PHE C 785 TYR C 796 5 12 HELIX 35 AD8 PRO C 806 MET C 810 5 5 HELIX 36 AD9 ALA C 811 GLY C 818 1 8 HELIX 37 AE1 THR C 821 MET C 838 1 18 HELIX 38 AE2 THR C 849 ASP C 863 1 15 HELIX 39 AE3 PRO C 877 TRP C 888 1 12 HELIX 40 AE4 GLU C 891 ARG C 895 5 5 HELIX 41 AE5 PRO C 897 GLU C 907 1 11 SHEET 1 AA1 5 ARG A 611 GLU A 618 0 SHEET 2 AA1 5 GLY A 622 VAL A 629 -1 O LEU A 626 N GLU A 614 SHEET 3 AA1 5 LEU A 650 LEU A 657 -1 O ILE A 656 N GLU A 623 SHEET 4 AA1 5 CYS A 698 ASP A 702 -1 O THR A 701 N ALA A 653 SHEET 5 AA1 5 LEU A 687 CYS A 691 -1 N LEU A 688 O ILE A 700 SHEET 1 AA2 2 GLN A 717 LEU A 718 0 SHEET 2 AA2 2 THR A 737 ILE A 738 1 O ILE A 738 N GLN A 717 SHEET 1 AA3 2 CYS A 772 VAL A 774 0 SHEET 2 AA3 2 ILE A 780 ILE A 782 -1 O LYS A 781 N LEU A 773 SHEET 1 AA4 5 LEU B 610 GLU B 618 0 SHEET 2 AA4 5 GLY B 622 VAL B 629 -1 O LEU B 626 N GLU B 614 SHEET 3 AA4 5 LEU B 651 LEU B 657 -1 O ILE B 656 N GLU B 623 SHEET 4 AA4 5 CYS B 698 ASP B 702 -1 O THR B 701 N ALA B 653 SHEET 5 AA4 5 LEU B 687 CYS B 691 -1 N LEU B 688 O ILE B 700 SHEET 1 AA5 2 GLN B 717 LEU B 718 0 SHEET 2 AA5 2 THR B 737 ILE B 738 1 O ILE B 738 N GLN B 717 SHEET 1 AA6 2 CYS B 772 VAL B 774 0 SHEET 2 AA6 2 ILE B 780 ILE B 782 -1 O LYS B 781 N LEU B 773 SHEET 1 AA7 5 LEU C 610 GLU C 618 0 SHEET 2 AA7 5 GLY C 622 VAL C 629 -1 O GLU C 628 N ARG C 611 SHEET 3 AA7 5 LEU C 651 LEU C 657 -1 O VAL C 654 N HIS C 625 SHEET 4 AA7 5 CYS C 698 ASP C 702 -1 O THR C 701 N ALA C 653 SHEET 5 AA7 5 LEU C 687 CYS C 691 -1 N LEU C 688 O ILE C 700 SHEET 1 AA8 2 GLN C 717 LEU C 718 0 SHEET 2 AA8 2 THR C 737 ILE C 738 1 O ILE C 738 N GLN C 717 SHEET 1 AA9 2 CYS C 772 VAL C 774 0 SHEET 2 AA9 2 ILE C 780 ILE C 782 -1 O LYS C 781 N LEU C 773 CISPEP 1 ASP A 695 PRO A 696 0 -1.89 CISPEP 2 ASP B 695 PRO B 696 0 -4.29 CISPEP 3 ASP C 695 PRO C 696 0 -1.81 SITE 1 AC1 6 PRO A 593 GLY A 594 LYS A 674 PRO C 593 SITE 2 AC1 6 GLY C 594 LYS C 674 SITE 1 AC2 2 ARG A 755 SER A 899 SITE 1 AC3 2 HIS A 716 ARG A 841 SITE 1 AC4 2 ARG A 755 ARG A 903 SITE 1 AC5 4 ARG A 645 LYS A 646 GLY A 647 ASN B 777 SITE 1 AC6 2 HIS B 716 ARG B 841 SITE 1 AC7 2 ARG C 755 THR C 759 SITE 1 AC8 2 ARG C 841 HOH C1101 CRYST1 105.307 105.307 406.939 90.00 90.00 120.00 P 63 2 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009496 0.005483 0.000000 0.00000 SCALE2 0.000000 0.010965 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002457 0.00000