HEADER HYDROLASE 16-FEB-20 6Y2K TITLE CRYSTAL STRUCTURE OF BETA-GALACTOSIDASE FROM THE PSYCHROPHILIC TITLE 2 MARINOMONAS EF1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GALACTOSIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.23; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MARINOMONAS SP. EF1; SOURCE 3 ORGANISM_TAXID: 2005043; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSYL HYDROLASE, PSYCHROPHILIC ENZYME, HEXAMERIC STRUCTURE, COLD KEYWDS 2 ADAPTATION, ENZYME KINETICS, COOPERATIVITY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MANGIAGALLI,M.LAPI,S.MAIONE,M.ORLANDO,S.BROCCA,A.PESCE,A.BARBIROLI, AUTHOR 2 S.PUCCIARELLI,C.CAMILLONI,M.LOTTI REVDAT 3 24-JAN-24 6Y2K 1 REMARK REVDAT 2 27-JAN-21 6Y2K 1 JRNL REVDAT 1 20-MAY-20 6Y2K 0 JRNL AUTH M.MANGIAGALLI,M.LAPI,S.MAIONE,M.ORLANDO,S.BROCCA,A.PESCE, JRNL AUTH 2 A.BARBIROLI,C.CAMILLONI,S.PUCCIARELLI,M.LOTTI,M.NARDINI JRNL TITL THE CO-EXISTENCE OF COLD ACTIVITY AND THERMAL STABILITY IN JRNL TITL 2 AN ANTARCTIC GH42 BETA-GALACTOSIDASE RELIES ON ITS HEXAMERIC JRNL TITL 3 QUATERNARY ARRANGEMENT. JRNL REF FEBS J. V. 288 546 2021 JRNL REFN ISSN 1742-464X JRNL PMID 32363751 JRNL DOI 10.1111/FEBS.15354 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 116.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 87612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4630 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5855 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 279 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5244 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 978 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.69000 REMARK 3 B22 (A**2) : 0.69000 REMARK 3 B33 (A**2) : -2.23000 REMARK 3 B12 (A**2) : 0.34000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.103 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.462 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5588 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5018 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7616 ; 1.249 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11656 ; 0.922 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 694 ; 5.989 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 280 ;35.814 ;23.464 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 893 ;12.631 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;13.347 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 800 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6279 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1208 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Y2K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292106765. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87313 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96335 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 116.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 29.40 REMARK 200 R MERGE (I) : 0.25500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 33.60 REMARK 200 R MERGE FOR SHELL (I) : 0.67400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1KWG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5 M NACL, 100 MM NA-CITRATE, 2% REMARK 280 ETHYLENE IMINE POLYMER., PH 5.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 116.28700 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 116.28700 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 116.28700 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 116.28700 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 116.28700 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 116.28700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 46680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 118330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -276.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 133.33200 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 66.66600 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 115.46890 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 66.66600 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 115.46890 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 581.43500 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 133.33200 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 581.43500 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 581.43500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1004 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1541 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1658 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 657 REMARK 465 HIS A 658 REMARK 465 HIS A 659 REMARK 465 HIS A 660 REMARK 465 HIS A 661 REMARK 465 HIS A 662 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 102 -119.11 -132.48 REMARK 500 ASP A 140 -143.39 59.48 REMARK 500 ASN A 141 110.32 -166.35 REMARK 500 SER A 234 52.70 -140.81 REMARK 500 GLN A 429 -35.86 75.33 REMARK 500 ALA A 472 71.31 -166.95 REMARK 500 LEU A 510 169.96 63.61 REMARK 500 PRO A 512 32.63 -92.20 REMARK 500 HIS A 548 -47.78 76.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1768 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A1769 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A1770 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A1771 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A1772 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A1773 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A1774 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH A1775 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A1776 DISTANCE = 6.99 ANGSTROMS REMARK 525 HOH A1777 DISTANCE = 7.65 ANGSTROMS REMARK 525 HOH A1778 DISTANCE = 9.25 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 711 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 712 DBREF 6Y2K A 1 662 PDB 6Y2K 6Y2K 1 662 SEQRES 1 A 662 MET LYS LEU GLY VAL CYS TYR TYR PRO GLU HIS TRP PRO SEQRES 2 A 662 LYS SER ARG TRP VAL GLU ASP ALA GLN HIS MET ARG ARG SEQRES 3 A 662 ILE GLY ILE GLN TYR VAL ARG VAL GLY GLU PHE SER TRP SEQRES 4 A 662 SER THR ILE GLU PRO THR PRO GLY GLU LEU HIS TRP GLU SEQRES 5 A 662 TRP LEU ASP GLU SER LEU ASP ILE LEU HIS SER GLN GLY SEQRES 6 A 662 LEU LYS VAL ILE LEU GLY THR PRO THR ALA THR PRO PRO SEQRES 7 A 662 LYS TRP LEU VAL ASP ARG HIS PRO SER MET LEU ALA LYS SEQRES 8 A 662 ASP GLU ALA GLY ARG VAL ARG GLY PHE GLY SER ARG ARG SEQRES 9 A 662 HIS TYR THR PHE ALA SER LEU GLU TYR ARG GLU GLU CYS SEQRES 10 A 662 ARG ARG MET VAL THR MET MET ALA GLU ARG TYR GLY HIS SEQRES 11 A 662 HIS PRO ALA VAL ALA SER TRP GLN THR ASP ASN GLU TYR SEQRES 12 A 662 GLY CYS HIS ASP THR VAL LEU SER TYR ALA GLU ALA ASP SEQRES 13 A 662 LEU ALA ALA PHE ARG LEU TRP LEU ALA GLU LYS TYR GLY SEQRES 14 A 662 THR VAL GLU ALA LEU ASN LYS ALA TRP GLY ASN VAL PHE SEQRES 15 A 662 TRP SER MET ASP TYR ARG SER PHE ASP GLU ILE GLU LEU SEQRES 16 A 662 PRO ASN LEU THR VAL THR GLU ALA ASN PRO SER HIS ARG SEQRES 17 A 662 LEU ASP PHE GLN ARG CYS CYS SER ASP GLN VAL VAL ALA SEQRES 18 A 662 PHE ASN LYS LEU GLN VAL ASP ILE LEU ARG GLU HIS SER SEQRES 19 A 662 ALA GLY ARG ASP LEU VAL HIS ASN TYR MET GLY PHE PHE SEQRES 20 A 662 THR ALA PHE ASP HIS HIS LYS VAL GLY GLN ASP LEU ASP SEQRES 21 A 662 VAL ALA SER TRP ASP SER TYR PRO LEU GLY SER LEU ASP SEQRES 22 A 662 LYS GLU PRO LEU TYR THR GLU ASP GLU LYS HIS THR TYR SEQRES 23 A 662 LEU ARG VAL GLY HIS PRO ASP ALA GLY ALA PHE HIS HIS SEQRES 24 A 662 ASP LEU TYR ARG GLY CYS GLY ASN GLY ARG LEU TRP ILE SEQRES 25 A 662 MET GLU GLN GLN PRO GLY PRO VAL ASN TRP ALA PRO HIS SEQRES 26 A 662 ASN PRO THR PRO ALA ASP GLY ALA VAL ARG LEU TRP THR SEQRES 27 A 662 TRP GLU ALA PHE SER HIS GLY ALA GLU LEU VAL SER TYR SEQRES 28 A 662 PHE ARG TRP ARG GLN ALA PRO PHE GLY GLN GLU GLN MET SEQRES 29 A 662 HIS ALA GLY LEU LEU ARG PRO ASP ALA GLN GLU ALA GLU SEQRES 30 A 662 ALA ALA LYS GLU ALA THR LEU VAL ALA GLN GLU VAL LYS SEQRES 31 A 662 VAL LEU ALA GLU SER ILE GLY LEU ASP ALA ASP GLU LEU SEQRES 32 A 662 MET SER LEU PRO SER ALA GLY LYS VAL ALA LEU MET PHE SEQRES 33 A 662 ASP TYR ASP ALA CYS TRP SER LEU ASP ILE GLN PRO GLN SEQRES 34 A 662 SER ARG ALA TYR ARG TYR PHE PHE TRP CYS TYR ARG MET SEQRES 35 A 662 TYR GLU ALA MET ARG GLU LEU GLY LEU SER VAL ASP ILE SEQRES 36 A 662 VAL PRO SER ASN ALA PRO LEU ASP MET TYR GLU LEU LEU SEQRES 37 A 662 VAL LEU PRO ALA GLN ALA HIS ILE THR PRO GLU LEU GLN SEQRES 38 A 662 ASN ARG LEU ASN SER TYR GLN GLY VAL LEU LEU ALA GLY SEQRES 39 A 662 PRO ARG THR GLY SER LYS THR GLU THR TYR GLN ILE PRO SEQRES 40 A 662 GLU ASN LEU ALA PRO GLY PRO LEU ALA SER LEU LEU PRO SEQRES 41 A 662 LEU THR VAL GLU ARG VAL ASP ALA LEU PRO GLU HIS THR SEQRES 42 A 662 GLN PRO ALA VAL SER GLY ARG TRP GLY ALA GLY LYS LEU SEQRES 43 A 662 LYS HIS TRP HIS GLU GLN ILE LYS THR GLU LEU PRO CYS SEQRES 44 A 662 LEU LEU LYS ASP ASP GLY GLY ASN PRO VAL LEU MET GLY SEQRES 45 A 662 GLU GLY ARG HIS TYR TYR LEU GLY SER CYS ILE ASP ASN SEQRES 46 A 662 THR LEU LEU LYS ALA SER LEU ALA LYS LEU SER GLU VAL SEQRES 47 A 662 ALA GLY LEU SER THR TYR TYR LEU PRO LYS GLY VAL ARG SEQRES 48 A 662 VAL ARG GLU ARG GLY ASN VAL ILE PHE ALA PHE ASN TYR SEQRES 49 A 662 SER SER ASN THR VAL VAL PHE GLU PRO GLN ASN ALA GLU SEQRES 50 A 662 LEU VAL ILE GLY SER MET CYS LEU GLY ALA ALA ASP VAL SEQRES 51 A 662 ALA ILE TRP LYS LYS GLN HIS HIS HIS HIS HIS HIS HET CL A 701 1 HET CL A 702 1 HET GOL A 703 6 HET GOL A 704 6 HET GOL A 705 6 HET GOL A 706 6 HET GOL A 707 6 HET GOL A 708 6 HET GOL A 709 6 HET GOL A 710 6 HET GOL A 711 6 HET GOL A 712 6 HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CL 2(CL 1-) FORMUL 4 GOL 10(C3 H8 O3) FORMUL 14 HOH *978(H2 O) HELIX 1 AA1 TYR A 8 TRP A 12 5 5 HELIX 2 AA2 PRO A 13 SER A 15 5 3 HELIX 3 AA3 ARG A 16 GLY A 28 1 13 HELIX 4 AA4 SER A 38 GLU A 43 1 6 HELIX 5 AA5 TRP A 51 GLN A 64 1 14 HELIX 6 AA6 PRO A 78 HIS A 85 1 8 HELIX 7 AA7 PRO A 86 LEU A 89 5 4 HELIX 8 AA8 SER A 110 GLY A 129 1 20 HELIX 9 AA9 ALA A 153 GLY A 169 1 17 HELIX 10 AB1 THR A 170 GLY A 179 1 10 HELIX 11 AB2 VAL A 181 MET A 185 5 5 HELIX 12 AB3 SER A 189 ILE A 193 5 5 HELIX 13 AB4 ASN A 204 SER A 234 1 31 HELIX 14 AB5 ASP A 251 GLN A 257 1 7 HELIX 15 AB6 TYR A 267 GLU A 275 1 9 HELIX 16 AB7 THR A 279 TYR A 286 1 8 HELIX 17 AB8 ASP A 293 GLY A 306 1 14 HELIX 18 AB9 GLY A 332 HIS A 344 1 13 HELIX 19 AC1 ALA A 376 ILE A 396 1 21 HELIX 20 AC2 ASP A 399 SER A 405 1 7 HELIX 21 AC3 ASP A 417 GLN A 427 1 11 HELIX 22 AC4 ARG A 434 LEU A 449 1 16 HELIX 23 AC5 THR A 477 TYR A 487 1 11 HELIX 24 AC6 PRO A 512 LEU A 518 5 7 HELIX 25 AC7 ASP A 584 ALA A 599 1 16 SHEET 1 AA1 9 LYS A 2 CYS A 6 0 SHEET 2 AA1 9 ILE A 29 VAL A 34 1 O GLN A 30 N LEU A 3 SHEET 3 AA1 9 LYS A 67 GLY A 71 1 O GLY A 71 N VAL A 34 SHEET 4 AA1 9 VAL A 134 GLN A 138 1 O SER A 136 N LEU A 70 SHEET 5 AA1 9 ASP A 238 MET A 244 1 O VAL A 240 N TRP A 137 SHEET 6 AA1 9 VAL A 261 SER A 266 1 O SER A 263 N TYR A 243 SHEET 7 AA1 9 LEU A 310 GLN A 315 1 O GLU A 314 N SER A 266 SHEET 8 AA1 9 LEU A 348 PHE A 352 1 O SER A 350 N ILE A 312 SHEET 9 AA1 9 LYS A 2 CYS A 6 1 N GLY A 4 O VAL A 349 SHEET 1 AA210 VAL A 453 VAL A 456 0 SHEET 2 AA210 VAL A 412 MET A 415 1 N VAL A 412 O ASP A 454 SHEET 3 AA210 LEU A 467 LEU A 470 1 O VAL A 469 N ALA A 413 SHEET 4 AA210 VAL A 490 ALA A 493 1 O VAL A 490 N LEU A 468 SHEET 5 AA210 HIS A 576 LEU A 579 1 O LEU A 579 N ALA A 493 SHEET 6 AA210 PRO A 568 GLU A 573 -1 N MET A 571 O TYR A 578 SHEET 7 AA210 CYS A 559 ASP A 563 -1 N LEU A 560 O LEU A 570 SHEET 8 AA210 ALA A 536 SER A 538 -1 N SER A 538 O LYS A 562 SHEET 9 AA210 GLY A 544 THR A 555 -1 O GLY A 544 N VAL A 537 SHEET 10 AA210 LEU A 521 ALA A 528 -1 N ARG A 525 O GLN A 552 SHEET 1 AA310 VAL A 453 VAL A 456 0 SHEET 2 AA310 VAL A 412 MET A 415 1 N VAL A 412 O ASP A 454 SHEET 3 AA310 LEU A 467 LEU A 470 1 O VAL A 469 N ALA A 413 SHEET 4 AA310 VAL A 490 ALA A 493 1 O VAL A 490 N LEU A 468 SHEET 5 AA310 HIS A 576 LEU A 579 1 O LEU A 579 N ALA A 493 SHEET 6 AA310 PRO A 568 GLU A 573 -1 N MET A 571 O TYR A 578 SHEET 7 AA310 CYS A 559 ASP A 563 -1 N LEU A 560 O LEU A 570 SHEET 8 AA310 ALA A 536 SER A 538 -1 N SER A 538 O LYS A 562 SHEET 9 AA310 GLY A 544 THR A 555 -1 O GLY A 544 N VAL A 537 SHEET 10 AA310 SER A 581 ILE A 583 -1 O CYS A 582 N LYS A 547 SHEET 1 AA4 4 VAL A 610 ARG A 615 0 SHEET 2 AA4 4 VAL A 618 ASN A 623 -1 O PHE A 620 N ARG A 613 SHEET 3 AA4 4 ASP A 649 LYS A 655 -1 O ALA A 651 N ALA A 621 SHEET 4 AA4 4 ALA A 636 ILE A 640 -1 N VAL A 639 O ILE A 652 SHEET 1 AA5 2 VAL A 629 VAL A 630 0 SHEET 2 AA5 2 CYS A 644 LEU A 645 -1 O LEU A 645 N VAL A 629 CISPEP 1 PHE A 352 ARG A 353 0 0.07 CISPEP 2 ALA A 511 PRO A 512 0 5.17 SITE 1 AC1 4 TYR A 8 TRP A 12 ARG A 353 ARG A 355 SITE 1 AC2 4 ASP A 147 VAL A 149 LEU A 150 ALA A 249 SITE 1 AC3 9 ARG A 103 GLU A 142 TYR A 267 TRP A 322 SITE 2 AC3 9 PHE A 352 GLU A 362 HIS A 365 HOH A1047 SITE 3 AC3 9 HOH A1367 SITE 1 AC4 5 GLU A 93 TYR A 152 PRO A 196 ARG A 208 SITE 2 AC4 5 HOH A1193 SITE 1 AC5 6 TRP A 12 PRO A 13 LYS A 14 TRP A 53 SITE 2 AC5 6 HOH A 869 HOH A1391 SITE 1 AC6 9 PHE A 246 THR A 248 PHE A 436 PHE A 437 SITE 2 AC6 9 HOH A 813 HOH A 938 HOH A 984 HOH A1012 SITE 3 AC6 9 HOH A1390 SITE 1 AC7 6 HIS A 284 HIS A 532 GLN A 534 LYS A 545 SITE 2 AC7 6 HOH A 831 HOH A 857 SITE 1 AC8 8 MET A 364 LEU A 510 ALA A 511 VAL A 523 SITE 2 AC8 8 HOH A 824 HOH A 951 HOH A1158 HOH A1170 SITE 1 AC9 8 HIS A 23 ARG A 26 ALA A 373 GLN A 374 SITE 2 AC9 8 GLU A 375 HOH A 801 HOH A1144 HOH A1204 SITE 1 AD1 3 ASP A 59 HOH A1009 HOH A1063 SITE 1 AD2 5 ASP A 228 ILE A 229 GOL A 712 HOH A 804 SITE 2 AD2 5 HOH A1034 SITE 1 AD3 3 GLU A 232 GOL A 711 HOH A1233 CRYST1 133.332 133.332 232.574 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007500 0.004330 0.000000 0.00000 SCALE2 0.000000 0.008660 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004300 0.00000