HEADER RNA BINDING PROTEIN 21-FEB-20 6Y4H TITLE SOLUTION STRUCTURE OF COLD-SHOCK DOMAIN 7 AND 8 OF DROSOPHILA UPSTREAM TITLE 2 OF N-RAS (UNR) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPSTREAM OF N-RAS, ISOFORM A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: UNR, BCDNA:LD13080, CR32028, DMEL\CG7015, DUNR, MRE30, UNR, SOURCE 6 UNR, CG7015, DMEL_CG7015; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS CSD, NCCSD, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.M.HOLLMANN,B.SIMON,J.HENNIG REVDAT 3 14-JUN-23 6Y4H 1 REMARK REVDAT 2 10-FEB-21 6Y4H 1 JRNL REVDAT 1 29-JUL-20 6Y4H 0 JRNL AUTH N.M.HOLLMANN,P.K.A.JAGTAP,P.MASIEWICZ,T.GUITART,B.SIMON, JRNL AUTH 2 J.PROVAZNIK,F.STEIN,P.HABERKANT,L.J.SWEETAPPLE,L.VILLACORTA, JRNL AUTH 3 D.MOOIJMAN,V.BENES,M.M.SAVITSKI,F.GEBAUER,J.HENNIG JRNL TITL PSEUDO-RNA-BINDING DOMAINS MEDIATE RNA STRUCTURE SPECIFICITY JRNL TITL 2 IN UPSTREAM OF N-RAS. JRNL REF CELL REP V. 32 07930 2020 JRNL REFN ESSN 2211-1247 JRNL PMID 32697992 JRNL DOI 10.1016/J.CELREP.2020.107930 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Y4H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292106876. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-99% 13C; U-99% 15N] REMARK 210 DCSD78, 150 MM SODIUM CHLORIDE, REMARK 210 20 MM SODIUM PHOSPHATE, 1 MM DTT, REMARK 210 95% H2O/5% D2O; 0.5 MM [U-99% REMARK 210 13C; U-99% 15N] DCSD78, 150 MM REMARK 210 SODIUM CHLORIDE, 20 MM SODIUM REMARK 210 PHOSPHATE, 1 MM DTT, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D HN(CO) REMARK 210 CA; 3D HBHA(CO)NH; 3D HCCH-TOCSY; REMARK 210 3D HNCO; 2D 1H-1H NOESY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, CARA, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 25 HH12 ARG A 158 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 5 -168.27 -105.21 REMARK 500 1 GLU A 31 -175.86 -175.93 REMARK 500 1 VAL A 65 -71.69 -53.70 REMARK 500 1 ASN A 68 -46.61 69.72 REMARK 500 1 THR A 91 159.13 174.74 REMARK 500 1 GLN A 108 81.11 64.72 REMARK 500 1 GLU A 110 -19.34 -43.60 REMARK 500 1 SER A 127 -83.58 -137.58 REMARK 500 1 GLN A 128 134.37 -174.98 REMARK 500 1 ASN A 138 35.13 -92.11 REMARK 500 1 LEU A 142 30.66 -89.75 REMARK 500 1 LEU A 143 107.83 -43.95 REMARK 500 1 ASP A 154 -92.85 -159.17 REMARK 500 1 ARG A 158 -167.61 -161.63 REMARK 500 2 ALA A 2 -29.06 -153.14 REMARK 500 2 GLU A 31 -174.58 -170.23 REMARK 500 2 SER A 64 52.65 -92.31 REMARK 500 2 VAL A 65 -66.41 -98.28 REMARK 500 2 ASN A 68 -30.23 71.14 REMARK 500 2 ASN A 81 35.19 70.66 REMARK 500 2 THR A 91 161.42 173.77 REMARK 500 2 ARG A 102 -61.60 -96.91 REMARK 500 2 GLN A 108 82.56 66.75 REMARK 500 2 SER A 127 -84.01 -136.51 REMARK 500 2 GLN A 128 138.24 -174.67 REMARK 500 2 ASN A 138 34.66 -95.87 REMARK 500 2 LEU A 142 34.32 -79.51 REMARK 500 2 LEU A 143 105.43 -56.16 REMARK 500 2 ASP A 154 -100.35 -155.87 REMARK 500 3 SER A 64 42.84 -81.31 REMARK 500 3 THR A 91 122.72 81.04 REMARK 500 3 ARG A 99 146.89 -175.71 REMARK 500 3 ARG A 102 -66.46 -97.68 REMARK 500 3 ASN A 105 91.94 -164.08 REMARK 500 3 THR A 123 -80.37 -70.32 REMARK 500 3 SER A 127 -84.30 -137.60 REMARK 500 3 GLN A 128 139.84 -176.60 REMARK 500 3 ASN A 138 34.01 -99.48 REMARK 500 3 ASP A 154 -87.84 -175.10 REMARK 500 4 ALA A 58 31.13 -88.61 REMARK 500 4 ARG A 59 36.15 -90.61 REMARK 500 4 ASN A 68 79.88 47.61 REMARK 500 4 THR A 91 173.96 175.62 REMARK 500 4 ARG A 102 -65.23 -98.41 REMARK 500 4 ASN A 105 115.63 72.87 REMARK 500 4 PRO A 106 1.99 -69.53 REMARK 500 4 ARG A 122 80.66 54.22 REMARK 500 4 SER A 127 -85.23 -138.75 REMARK 500 4 GLN A 128 137.64 -175.96 REMARK 500 4 ASN A 138 33.90 -92.27 REMARK 500 REMARK 500 THIS ENTRY HAS 248 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34492 RELATED DB: BMRB REMARK 900 DROSOPHILA UNR CSD78 DBREF 6Y4H A 2 168 UNP Q9VSK3 Q9VSK3_DROME 756 922 SEQADV 6Y4H GLY A 1 UNP Q9VSK3 EXPRESSION TAG SEQRES 1 A 168 GLY ALA GLY SER ASP ALA GLY GLN VAL TYR ARG GLY PHE SEQRES 2 A 168 ILE ALA VAL MET LYS GLU ASN PHE GLY PHE ILE GLU THR SEQRES 3 A 168 LEU SER HIS ASP GLU GLU VAL PHE PHE HIS PHE SER ASN SEQRES 4 A 168 TYR MET GLY ASN PRO ASN TRP LEU GLU LEU GLY GLN GLU SEQRES 5 A 168 VAL GLU TYR THR LEU ALA ARG ASN GLY ASN THR SER VAL SEQRES 6 A 168 SER GLY ASN CYS LEU PRO ALA GLU ASN VAL ARG MET LEU SEQRES 7 A 168 PRO LYS ASN SER ILE PRO GLN PRO ALA VAL LEU GLU THR SEQRES 8 A 168 THR HIS ASN GLY VAL VAL ALA ARG PRO LEU ARG CYS ILE SEQRES 9 A 168 ASN PRO ASP GLN GLN GLU TYR ALA GLY LEU ILE GLU ILE SEQRES 10 A 168 LEU ASP GLU LEU ARG THR THR VAL ILE SER GLN HIS GLU SEQRES 11 A 168 PHE GLY ILE THR SER LEU VAL ASN LYS ARG ASP LEU LEU SEQRES 12 A 168 GLN LYS GLY ASP LEU VAL SER PHE ARG ILE ASP GLU SER SEQRES 13 A 168 GLY ARG ALA ALA CYS VAL ASN ALA VAL ARG GLN LYS HELIX 1 AA1 SER A 38 TYR A 40 5 3 HELIX 2 AA2 ASN A 43 LEU A 47 5 5 SHEET 1 AA1 5 GLU A 32 HIS A 36 0 SHEET 2 AA1 5 PHE A 21 THR A 26 -1 N GLY A 22 O PHE A 35 SHEET 3 AA1 5 TYR A 10 MET A 17 -1 N PHE A 13 O GLU A 25 SHEET 4 AA1 5 GLU A 52 LEU A 57 -1 O VAL A 53 N GLY A 12 SHEET 5 AA1 5 ALA A 72 MET A 77 -1 O ARG A 76 N GLU A 54 SHEET 1 AA2 5 HIS A 129 GLU A 130 0 SHEET 2 AA2 5 LEU A 114 ILE A 117 -1 N ILE A 115 O HIS A 129 SHEET 3 AA2 5 HIS A 93 ARG A 99 -1 N VAL A 96 O GLU A 116 SHEET 4 AA2 5 LEU A 148 ARG A 152 -1 O VAL A 149 N GLY A 95 SHEET 5 AA2 5 ALA A 160 ALA A 164 -1 O ALA A 160 N ARG A 152 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1