HEADER HYDROLASE 21-FEB-20 6Y4I TITLE STRUCTURAL AND KINETIC EVALUATION OF PHOSPHORAMIDATE INHIBITORS ON TITLE 2 THERMOLYSIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: E; COMPND 4 SYNONYM: NEUTRAL PROTEASE; COMPND 5 EC: 3.4.24.27; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: NPRS, NPRM; SOURCE 5 EXPRESSION_SYSTEM: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1422 KEYWDS PHOSPHORAMIDATE INHIBITOR, PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.KLJAJIC,A.HEINE,G.KLEBE REVDAT 2 24-JAN-24 6Y4I 1 REMARK REVDAT 1 31-MAR-21 6Y4I 0 JRNL AUTH M.KLJAJIC,H.-D.GERBER,A.HEINE,G.KLEBE JRNL TITL STRUCTURAL AND KINETIC EVALUATION OF PHOSPHORAMIDATE JRNL TITL 2 INHIBITORS ON THERMOLYSIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 113182 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.127 REMARK 3 R VALUE (WORKING SET) : 0.126 REMARK 3 FREE R VALUE : 0.140 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5660 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3100 - 3.6000 1.00 3948 208 0.1638 0.1655 REMARK 3 2 3.6000 - 2.8600 1.00 3729 196 0.1340 0.1375 REMARK 3 3 2.8600 - 2.5000 1.00 3673 194 0.1200 0.1418 REMARK 3 4 2.5000 - 2.2700 1.00 3659 192 0.1130 0.1168 REMARK 3 5 2.2700 - 2.1100 1.00 3640 192 0.1088 0.1286 REMARK 3 6 2.1100 - 1.9800 1.00 3620 191 0.1078 0.1191 REMARK 3 7 1.9800 - 1.8800 1.00 3606 189 0.1114 0.1248 REMARK 3 8 1.8800 - 1.8000 1.00 3618 191 0.1086 0.1283 REMARK 3 9 1.8000 - 1.7300 1.00 3599 189 0.1060 0.1211 REMARK 3 10 1.7300 - 1.6700 1.00 3593 189 0.1066 0.1281 REMARK 3 11 1.6700 - 1.6200 1.00 3577 189 0.1046 0.1077 REMARK 3 12 1.6200 - 1.5700 1.00 3579 188 0.1038 0.1211 REMARK 3 13 1.5700 - 1.5300 1.00 3578 188 0.1011 0.1260 REMARK 3 14 1.5300 - 1.5000 1.00 3557 187 0.1072 0.1222 REMARK 3 15 1.5000 - 1.4600 1.00 3572 188 0.1081 0.1282 REMARK 3 16 1.4600 - 1.4300 1.00 3557 188 0.1147 0.1217 REMARK 3 17 1.4300 - 1.4000 1.00 3558 187 0.1159 0.1518 REMARK 3 18 1.4000 - 1.3800 1.00 3568 188 0.1197 0.1441 REMARK 3 19 1.3800 - 1.3500 1.00 3571 188 0.1153 0.1529 REMARK 3 20 1.3500 - 1.3300 1.00 3524 185 0.1220 0.1492 REMARK 3 21 1.3300 - 1.3100 1.00 3559 187 0.1290 0.1549 REMARK 3 22 1.3100 - 1.2900 1.00 3518 186 0.1357 0.1530 REMARK 3 23 1.2900 - 1.2700 1.00 3552 187 0.1419 0.1618 REMARK 3 24 1.2700 - 1.2500 1.00 3542 186 0.1402 0.1743 REMARK 3 25 1.2500 - 1.2300 1.00 3535 186 0.1445 0.1831 REMARK 3 26 1.2300 - 1.2200 1.00 3517 185 0.1521 0.1554 REMARK 3 27 1.2200 - 1.2000 0.99 3519 185 0.1576 0.1691 REMARK 3 28 1.2000 - 1.1900 0.99 3549 187 0.1582 0.1743 REMARK 3 29 1.1900 - 1.1700 0.99 3483 184 0.1727 0.1840 REMARK 3 30 1.1700 - 1.1600 0.97 3422 180 0.1925 0.2324 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.080 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 11.441 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2611 REMARK 3 ANGLE : 0.933 3569 REMARK 3 CHIRALITY : 0.079 380 REMARK 3 PLANARITY : 0.006 483 REMARK 3 DIHEDRAL : 16.469 916 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Y4I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292106715. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 113185 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.160 REMARK 200 RESOLUTION RANGE LOW (A) : 46.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.420 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09100 REMARK 200 FOR THE DATA SET : 10.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.48200 REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5LVD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M CSCL, 50 MM REMARK 280 TRIS(HYDROXYMETHYL)AMINOMETHAN, 50% DMSO, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.32300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.64600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.98450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 108.30750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.66150 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.32300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 86.64600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 108.30750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 64.98450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.66150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH E 768 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE E 1 CD1 REMARK 470 GLN E 61 CD OE1 NE2 REMARK 470 GLN E 128 CD OE1 NE2 REMARK 470 LYS E 182 CG CD CE NZ REMARK 470 GLN E 225 CD OE1 NE2 REMARK 470 LYS E 265 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER E 25 94.15 -161.15 REMARK 500 THR E 26 -59.35 70.53 REMARK 500 SER E 92 -172.11 59.97 REMARK 500 SER E 107 -163.50 61.09 REMARK 500 ASN E 111 55.22 -93.00 REMARK 500 THR E 152 -104.02 -119.02 REMARK 500 ASN E 159 -143.97 55.55 REMARK 500 THR E 194 76.04 43.41 REMARK 500 ILE E 232 -60.18 -103.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH E 861 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH E 862 DISTANCE = 6.46 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 57 OD1 REMARK 620 2 ASP E 57 OD2 52.4 REMARK 620 3 ASP E 59 OD1 122.8 70.6 REMARK 620 4 GLN E 61 O 94.4 89.1 89.0 REMARK 620 5 HOH E 557 O 157.7 146.8 76.8 96.6 REMARK 620 6 HOH E 573 O 81.8 132.7 154.7 82.8 80.4 REMARK 620 7 HOH E 767 O 85.7 87.9 87.7 176.1 84.6 101.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 138 OD2 REMARK 620 2 GLU E 177 OE1 77.8 REMARK 620 3 GLU E 177 OE2 127.4 49.8 REMARK 620 4 ASP E 185 OD1 159.9 122.3 72.6 REMARK 620 5 GLU E 187 O 83.3 145.7 142.5 79.4 REMARK 620 6 GLU E 190 OE1 83.9 128.2 122.0 82.2 77.0 REMARK 620 7 GLU E 190 OE2 98.9 83.2 73.4 84.0 128.3 52.3 REMARK 620 8 HOH E 569 O 97.6 78.6 78.8 88.1 75.8 152.4 152.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 142 NE2 REMARK 620 2 HIS E 146 NE2 104.2 REMARK 620 3 GLU E 166 OE2 121.9 94.5 REMARK 620 4 0PK E 410 O1P 92.6 85.1 144.1 REMARK 620 5 0PK E 410 O2P 112.8 131.5 91.5 63.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 177 OE2 REMARK 620 2 ASN E 183 O 92.8 REMARK 620 3 ASP E 185 OD2 88.5 90.5 REMARK 620 4 GLU E 190 OE2 83.0 171.9 82.5 REMARK 620 5 HOH E 568 O 87.7 91.2 176.0 95.6 REMARK 620 6 HOH E 581 O 173.5 92.1 95.6 92.6 88.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR E 193 O REMARK 620 2 THR E 194 O 76.8 REMARK 620 3 THR E 194 OG1 75.8 71.2 REMARK 620 4 ILE E 197 O 155.2 79.9 104.7 REMARK 620 5 ASP E 200 OD1 121.8 133.1 73.0 80.9 REMARK 620 6 HOH E 594 O 81.8 151.0 122.0 116.5 75.1 REMARK 620 7 HOH E 744 O 88.4 84.2 153.1 80.7 133.7 75.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS E 411 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR E 193 OH REMARK 620 2 SER E 201 O 94.1 REMARK 620 3 SER E 201 O 91.3 2.9 REMARK 620 4 LEU E 202 O 110.8 67.2 68.7 REMARK 620 N 1 2 3 REMARK 630 REMARK 630 MOLECULE TYPE: NULL REMARK 630 MOLECULE NAME: N-[(S)-[(1R)-1-{[(BENZYLOXY)CARBONYL]AMINO}-2- REMARK 630 PHENYLETHYL](HYDROXY)PHOSPHORYL]-L-LEUCYL-L-ALANINE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 0PK E 410 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: PHQ PPH LEU ALA REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN E 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS E 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS E 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS E 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS E 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 0PK E 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CS E 411 DBREF 6Y4I E 1 316 UNP P43133 THER_GEOSE 236 551 SEQRES 1 E 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 E 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 E 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASN GLY ILE SEQRES 4 E 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 E 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 E 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 E 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 E 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 E 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 E 316 SER GLN MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 E 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 E 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 E 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 E 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 E 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 E 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 E 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 E 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 E 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 E 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 E 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 E 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 E 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 E 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 E 316 VAL GLY VAL LYS HET CA E 401 1 HET CA E 402 1 HET CA E 403 1 HET CA E 404 1 HET ZN E 405 1 HET DMS E 406 4 HET DMS E 407 4 HET DMS E 408 4 HET DMS E 409 4 HET 0PK E 410 36 HET CS E 411 1 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM 0PK N-[(S)-[(1R)-1-{[(BENZYLOXY)CARBONYL]AMINO}-2- HETNAM 2 0PK PHENYLETHYL](HYDROXY)PHOSPHORYL]-L-LEUCYL-L-ALANINE HETNAM CS CESIUM ION HETSYN 0PK ZFPLA FORMUL 2 CA 4(CA 2+) FORMUL 6 ZN ZN 2+ FORMUL 7 DMS 4(C2 H6 O S) FORMUL 11 0PK C25 H34 N3 O7 P FORMUL 12 CS CS 1+ FORMUL 13 HOH *362(H2 O) HELIX 1 AA1 ALA E 64 TYR E 66 5 3 HELIX 2 AA2 ASP E 67 ASN E 89 1 23 HELIX 3 AA3 PRO E 132 GLY E 135 5 4 HELIX 4 AA4 GLY E 136 THR E 152 1 17 HELIX 5 AA5 GLN E 158 ASN E 181 1 24 HELIX 6 AA6 ASP E 207 GLY E 212 5 6 HELIX 7 AA7 HIS E 216 ARG E 220 5 5 HELIX 8 AA8 THR E 224 VAL E 230 1 7 HELIX 9 AA9 ASN E 233 GLY E 247 1 15 HELIX 10 AB1 GLY E 259 TYR E 274 1 16 HELIX 11 AB2 ASN E 280 GLY E 297 1 18 HELIX 12 AB3 SER E 300 VAL E 313 1 14 SHEET 1 AA1 5 ALA E 56 ASP E 57 0 SHEET 2 AA1 5 TYR E 28 TYR E 29 -1 N TYR E 28 O ASP E 57 SHEET 3 AA1 5 GLN E 17 TYR E 24 -1 N THR E 23 O TYR E 29 SHEET 4 AA1 5 THR E 4 ARG E 11 -1 N THR E 4 O TYR E 24 SHEET 5 AA1 5 GLN E 61 PHE E 62 1 O PHE E 62 N VAL E 9 SHEET 1 AA2 3 GLN E 31 ASP E 32 0 SHEET 2 AA2 3 ILE E 39 ASP E 43 -1 O ILE E 39 N ASP E 32 SHEET 3 AA2 3 SER E 53 LEU E 54 -1 O SER E 53 N ASP E 43 SHEET 1 AA3 5 GLN E 31 ASP E 32 0 SHEET 2 AA3 5 ILE E 39 ASP E 43 -1 O ILE E 39 N ASP E 32 SHEET 3 AA3 5 ILE E 100 TYR E 106 1 O ILE E 100 N PHE E 40 SHEET 4 AA3 5 MET E 120 GLY E 123 1 O MET E 120 N ARG E 101 SHEET 5 AA3 5 ALA E 113 TRP E 115 -1 N PHE E 114 O VAL E 121 SHEET 1 AA4 2 GLU E 187 ILE E 188 0 SHEET 2 AA4 2 ARG E 203 SER E 204 -1 O ARG E 203 N ILE E 188 SHEET 1 AA5 2 GLY E 248 HIS E 250 0 SHEET 2 AA5 2 VAL E 253 VAL E 255 -1 O VAL E 255 N GLY E 248 LINK OD1 ASP E 57 CA CA E 402 1555 1555 2.40 LINK OD2 ASP E 57 CA CA E 402 1555 1555 2.57 LINK OD1 ASP E 59 CA CA E 402 1555 1555 2.39 LINK O GLN E 61 CA CA E 402 1555 1555 2.28 LINK OD2 ASP E 138 CA CA E 401 1555 1555 2.38 LINK NE2 HIS E 142 ZN ZN E 405 1555 1555 2.02 LINK NE2 HIS E 146 ZN ZN E 405 1555 1555 2.04 LINK OE2 GLU E 166 ZN ZN E 405 1555 1555 2.00 LINK OE1 GLU E 177 CA CA E 401 1555 1555 2.45 LINK OE2 GLU E 177 CA CA E 401 1555 1555 2.73 LINK OE2 GLU E 177 CA CA E 403 1555 1555 2.41 LINK O ASN E 183 CA CA E 403 1555 1555 2.28 LINK OD1 ASP E 185 CA CA E 401 1555 1555 2.49 LINK OD2 ASP E 185 CA CA E 403 1555 1555 2.34 LINK O GLU E 187 CA CA E 401 1555 1555 2.33 LINK OE1 GLU E 190 CA CA E 401 1555 1555 2.49 LINK OE2 GLU E 190 CA CA E 401 1555 1555 2.52 LINK OE2 GLU E 190 CA CA E 403 1555 1555 2.32 LINK O TYR E 193 CA CA E 404 1555 1555 2.38 LINK OH TYR E 193 CS CS E 411 1555 1555 3.30 LINK O THR E 194 CA CA E 404 1555 1555 2.40 LINK OG1 THR E 194 CA CA E 404 1555 1555 2.38 LINK O ILE E 197 CA CA E 404 1555 1555 2.29 LINK OD1 ASP E 200 CA CA E 404 1555 1555 2.37 LINK O ASER E 201 CS CS E 411 1555 1555 3.04 LINK O BSER E 201 CS CS E 411 1555 1555 3.00 LINK O LEU E 202 CS CS E 411 1555 1555 3.28 LINK CA CA E 401 O HOH E 569 1555 1555 2.43 LINK CA CA E 402 O HOH E 557 1555 1555 2.40 LINK CA CA E 402 O HOH E 573 1555 1555 2.41 LINK CA CA E 402 O HOH E 767 1555 1555 2.35 LINK CA CA E 403 O HOH E 568 1555 1555 2.37 LINK CA CA E 403 O HOH E 581 1555 1555 2.33 LINK CA CA E 404 O HOH E 594 1555 1555 2.42 LINK CA CA E 404 O HOH E 744 1555 1555 2.39 LINK ZN ZN E 405 O1PA0PK E 410 1555 1555 2.52 LINK ZN ZN E 405 O2PA0PK E 410 1555 1555 2.05 CISPEP 1 LEU E 50 PRO E 51 0 3.55 SITE 1 AC1 6 ASP E 138 GLU E 177 ASP E 185 GLU E 187 SITE 2 AC1 6 GLU E 190 HOH E 569 SITE 1 AC2 6 ASP E 57 ASP E 59 GLN E 61 HOH E 557 SITE 2 AC2 6 HOH E 573 HOH E 767 SITE 1 AC3 6 GLU E 177 ASN E 183 ASP E 185 GLU E 190 SITE 2 AC3 6 HOH E 568 HOH E 581 SITE 1 AC4 6 TYR E 193 THR E 194 ILE E 197 ASP E 200 SITE 2 AC4 6 HOH E 594 HOH E 744 SITE 1 AC5 4 HIS E 142 HIS E 146 GLU E 166 0PK E 410 SITE 1 AC6 4 THR E 2 GLY E 3 GLN E 31 ASN E 33 SITE 1 AC7 5 GLY E 95 PRO E 184 TRP E 186 HOH E 648 SITE 2 AC7 5 HOH E 743 SITE 1 AC8 4 GLY E 259 ARG E 260 ASP E 261 HOH E 527 SITE 1 AC9 3 TYR E 106 0PK E 410 HOH E 562 SITE 1 AD1 21 TYR E 110 ASN E 112 ALA E 113 PHE E 114 SITE 2 AD1 21 TRP E 115 HIS E 142 GLU E 143 HIS E 146 SITE 3 AD1 21 ASP E 150 TYR E 157 ASN E 165 GLU E 166 SITE 4 AD1 21 LEU E 202 ARG E 203 HIS E 231 ZN E 405 SITE 5 AD1 21 DMS E 409 HOH E 533 HOH E 535 HOH E 561 SITE 6 AD1 21 HOH E 778 SITE 1 AD2 4 TYR E 193 SER E 201 LEU E 202 TYR E 211 CRYST1 92.612 92.612 129.969 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010798 0.006234 0.000000 0.00000 SCALE2 0.000000 0.012468 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007694 0.00000