HEADER HYDROLASE 25-FEB-20 6Y5M TITLE CRYSTAL STRUCTURE OF MOUSE AUTOTAXIN IN COMPLEX WITH COMPOUND 1A COMPND MOL_ID: 1; COMPND 2 MOLECULE: ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE FAMILY COMPND 3 MEMBER 2; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: E-NPP 2,AUTOTAXIN,EXTRACELLULAR LYSOPHOSPHOLIPASE D,LYSOPLD; COMPND 6 EC: 3.1.4.39; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: DELETION(571-574) D743N MUTATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ENPP2, NPPS2, PDNP2; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS ZINC BINDING HYDROLASE ACTIVITY INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.FALLER,F.ZINK REVDAT 3 24-JAN-24 6Y5M 1 REMARK REVDAT 2 23-DEC-20 6Y5M 1 JRNL REVDAT 1 18-NOV-20 6Y5M 0 JRNL AUTH C.G.THOMSON,D.LE GRAND,M.DOWLING,D.BEATTIE,L.ELPHICK, JRNL AUTH 2 M.FALLER,M.FREEMAN,E.HARDAKER,V.HEAD,R.HEMMIG,J.HILL, JRNL AUTH 3 A.LISTER,D.PASCOE,S.RIEFFEL,B.SHRESTHA,O.STEWARD,F.ZINK JRNL TITL DEVELOPMENT OF AUTOTAXIN INHIBITORS: A SERIES OF TETRAZOLE JRNL TITL 2 CINNAMIDES. JRNL REF BIOORG.MED.CHEM.LETT. V. 31 27663 2021 JRNL REFN ESSN 1464-3405 JRNL PMID 33160025 JRNL DOI 10.1016/J.BMCL.2020.127663 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 (6-FEB-2020) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 56902 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2731 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.03 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2071 REMARK 3 BIN FREE R VALUE : 0.2215 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 54 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6109 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 146 REMARK 3 SOLVENT ATOMS : 489 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.43960 REMARK 3 B22 (A**2) : -0.68470 REMARK 3 B33 (A**2) : -7.75490 REMARK 3 B12 (A**2) : -1.56010 REMARK 3 B13 (A**2) : 1.01820 REMARK 3 B23 (A**2) : 6.18940 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.210 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.163 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.138 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.162 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.138 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6485 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8878 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2121 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1094 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6485 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 861 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5625 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.92 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.72 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.36 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -26.3176 25.5362 -21.4427 REMARK 3 T TENSOR REMARK 3 T11: -0.1106 T22: -0.1118 REMARK 3 T33: -0.0809 T12: -0.0009 REMARK 3 T13: -0.0312 T23: -0.0426 REMARK 3 L TENSOR REMARK 3 L11: 0.9057 L22: 0.5165 REMARK 3 L33: 0.734 L12: 0.0415 REMARK 3 L13: -0.2019 L23: -0.1543 REMARK 3 S TENSOR REMARK 3 S11: 0.0201 S12: -0.0057 S13: -0.0404 REMARK 3 S21: -0.0057 S22: -0.0386 S23: 0.0093 REMARK 3 S31: -0.0404 S32: 0.0093 S33: 0.0186 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Y5M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292106818. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99998 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56903 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.011 REMARK 200 RESOLUTION RANGE LOW (A) : 57.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3NKM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3,350 , 0.2M LITHIUM NITRATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 36 REMARK 465 GLU A 37 REMARK 465 TRP A 38 REMARK 465 ASP A 39 REMARK 465 GLU A 40 REMARK 465 GLY A 41 REMARK 465 PRO A 42 REMARK 465 PRO A 43 REMARK 465 THR A 44 REMARK 465 VAL A 45 REMARK 465 LEU A 46 REMARK 465 SER A 47 REMARK 465 ASP A 48 REMARK 465 SER A 49 REMARK 465 PRO A 50 REMARK 465 VAL A 110 REMARK 465 VAL A 460 REMARK 465 TYR A 461 REMARK 465 LYS A 462 REMARK 465 LYS A 463 REMARK 465 PRO A 464 REMARK 465 SER A 465 REMARK 465 GLY A 466 REMARK 465 ASP A 573 REMARK 465 ASP A 574 REMARK 465 LYS A 575 REMARK 465 ASN A 576 REMARK 465 LYS A 577 REMARK 465 LEU A 578 REMARK 465 GLU A 579 REMARK 465 GLU A 580 REMARK 465 LEU A 581 REMARK 465 ASN A 582 REMARK 465 LYS A 583 REMARK 465 ARG A 584 REMARK 465 LEU A 585 REMARK 465 HIS A 586 REMARK 465 SER A 860 REMARK 465 GLU A 861 REMARK 465 ILE A 862 REMARK 465 HIS A 863 REMARK 465 HIS A 864 REMARK 465 HIS A 865 REMARK 465 HIS A 866 REMARK 465 HIS A 867 REMARK 465 HIS A 868 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 54 OG1 CG2 REMARK 470 SER A 55 OG REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 GLN A 66 CG CD OE1 NE2 REMARK 470 GLU A 67 CG CD OE1 OE2 REMARK 470 SER A 83 OG REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 ARG A 98 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 GLU A 114 CG CD OE1 OE2 REMARK 470 LEU A 124 CG CD1 CD2 REMARK 470 ARG A 126 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 140 CG CD OE1 OE2 REMARK 470 ARG A 162 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 LYS A 180 CG CD CE NZ REMARK 470 SER A 182 OG REMARK 470 LYS A 183 CG CD CE NZ REMARK 470 HIS A 242 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 244 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 246 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 290 CG CD OE1 NE2 REMARK 470 LYS A 316 CG CD CE NZ REMARK 470 GLU A 330 CG CD OE1 OE2 REMARK 470 LYS A 333 CG CD CE NZ REMARK 470 LEU A 345 CG CD1 CD2 REMARK 470 LYS A 346 CG CD CE NZ REMARK 470 LYS A 395 CG CD CE NZ REMARK 470 ILE A 396 CG1 CG2 CD1 REMARK 470 LEU A 400 CG CD1 CD2 REMARK 470 LYS A 401 CG CD CE NZ REMARK 470 LYS A 405 CG CD CE NZ REMARK 470 LYS A 456 CG CD CE NZ REMARK 470 LEU A 458 CG CD1 CD2 REMARK 470 ASP A 459 CG OD1 OD2 REMARK 470 LYS A 467 CG CD CE NZ REMARK 470 PHE A 469 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 519 CG CD CE NZ REMARK 470 ARG A 540 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 549 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 558 CG CD1 CD2 REMARK 470 LYS A 588 CG CD CE NZ REMARK 470 GLU A 593 CG CD OE1 OE2 REMARK 470 GLN A 638 CG CD OE1 NE2 REMARK 470 GLU A 640 CG CD OE1 OE2 REMARK 470 SER A 643 OG REMARK 470 GLU A 646 CG CD OE1 OE2 REMARK 470 ASN A 650 CG OD1 ND2 REMARK 470 LYS A 670 CG CD CE NZ REMARK 470 LYS A 673 CG CD CE NZ REMARK 470 GLU A 690 CG CD OE1 OE2 REMARK 470 ASP A 694 CG OD1 OD2 REMARK 470 GLU A 749 CG CD OE1 OE2 REMARK 470 ASP A 750 CG OD1 OD2 REMARK 470 GLU A 757 CG CD OE1 OE2 REMARK 470 LYS A 783 CG CD CE NZ REMARK 470 LYS A 840 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 368 61.71 -115.44 REMARK 500 ALA A 435 -36.83 -150.46 REMARK 500 ARG A 450 -0.07 77.97 REMARK 500 ASP A 477 125.97 -34.42 REMARK 500 THR A 485 -167.61 -127.25 REMARK 500 LEU A 596 74.42 -117.42 REMARK 500 SER A 676 -159.59 -114.12 REMARK 500 ASN A 728 61.85 64.97 REMARK 500 TYR A 742 45.72 36.78 REMARK 500 GLU A 757 126.59 -33.54 REMARK 500 LYS A 783 52.42 -146.04 REMARK 500 TRP A 814 -23.81 -151.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 917 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 162 O REMARK 620 2 SER A 301 OG 129.0 REMARK 620 3 HOH A1287 O 142.7 86.0 REMARK 620 4 HOH A1420 O 106.1 86.3 86.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 909 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 171 OD1 REMARK 620 2 THR A 209 OG1 122.6 REMARK 620 3 ASP A 358 OD2 99.8 110.0 REMARK 620 4 HIS A 359 NE2 112.9 110.6 97.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 918 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 205 O REMARK 620 2 LEU A 432 O 125.0 REMARK 620 3 HOH A1004 O 112.2 94.7 REMARK 620 4 HOH A1305 O 98.0 68.7 149.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 910 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 311 OD1 REMARK 620 2 ASP A 311 OD2 52.5 REMARK 620 3 HIS A 315 NE2 102.8 92.1 REMARK 620 4 HIS A 474 NE2 94.1 146.7 96.4 REMARK 620 5 PO4 A 911 O2 93.5 79.8 152.1 105.0 REMARK 620 6 PO4 A 911 O4 157.9 123.7 99.0 86.8 65.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 916 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 592 OE1 REMARK 620 2 TYR A 613 OH 79.8 REMARK 620 3 GLU A 618 OE2 134.9 97.5 REMARK 620 4 HOH A1090 O 95.9 92.8 129.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 915 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 739 OD1 REMARK 620 2 ASN A 741 OD1 86.7 REMARK 620 3 ASN A 743 OD1 81.5 85.5 REMARK 620 4 LEU A 745 O 88.6 168.7 83.7 REMARK 620 5 ASP A 747 OD1 98.7 87.1 172.5 103.8 REMARK 620 6 HOH A1160 O 168.8 88.3 88.1 94.5 91.1 REMARK 620 N 1 2 3 4 5 DBREF 6Y5M A 36 862 UNP Q9R1E6 ENPP2_MOUSE 36 862 SEQADV 6Y5M A UNP Q9R1E6 LYS 571 DELETION SEQADV 6Y5M A UNP Q9R1E6 VAL 572 DELETION SEQADV 6Y5M A UNP Q9R1E6 GLU 573 DELETION SEQADV 6Y5M A UNP Q9R1E6 PRO 574 DELETION SEQADV 6Y5M HIS A 863 UNP Q9R1E6 EXPRESSION TAG SEQADV 6Y5M HIS A 864 UNP Q9R1E6 EXPRESSION TAG SEQADV 6Y5M HIS A 865 UNP Q9R1E6 EXPRESSION TAG SEQADV 6Y5M HIS A 866 UNP Q9R1E6 EXPRESSION TAG SEQADV 6Y5M HIS A 867 UNP Q9R1E6 EXPRESSION TAG SEQADV 6Y5M HIS A 868 UNP Q9R1E6 EXPRESSION TAG SEQRES 1 A 829 ALA GLU TRP ASP GLU GLY PRO PRO THR VAL LEU SER ASP SEQRES 2 A 829 SER PRO TRP THR ASN THR SER GLY SER CYS LYS GLY ARG SEQRES 3 A 829 CYS PHE GLU LEU GLN GLU VAL GLY PRO PRO ASP CYS ARG SEQRES 4 A 829 CYS ASP ASN LEU CYS LYS SER TYR SER SER CYS CYS HIS SEQRES 5 A 829 ASP PHE ASP GLU LEU CYS LEU LYS THR ALA ARG GLY TRP SEQRES 6 A 829 GLU CYS THR LYS ASP ARG CYS GLY GLU VAL ARG ASN GLU SEQRES 7 A 829 GLU ASN ALA CYS HIS CYS SER GLU ASP CYS LEU SER ARG SEQRES 8 A 829 GLY ASP CYS CYS THR ASN TYR GLN VAL VAL CYS LYS GLY SEQRES 9 A 829 GLU SER HIS TRP VAL ASP ASP ASP CYS GLU GLU ILE ARG SEQRES 10 A 829 VAL PRO GLU CYS PRO ALA GLY PHE VAL ARG PRO PRO LEU SEQRES 11 A 829 ILE ILE PHE SER VAL ASP GLY PHE ARG ALA SER TYR MET SEQRES 12 A 829 LYS LYS GLY SER LYS VAL MET PRO ASN ILE GLU LYS LEU SEQRES 13 A 829 ARG SER CYS GLY THR HIS ALA PRO TYR MET ARG PRO VAL SEQRES 14 A 829 TYR PRO THR LYS THR PHE PRO ASN LEU TYR THR LEU ALA SEQRES 15 A 829 THR GLY LEU TYR PRO GLU SER HIS GLY ILE VAL GLY ASN SEQRES 16 A 829 SER MET TYR ASP PRO VAL PHE ASP ALA THR PHE HIS LEU SEQRES 17 A 829 ARG GLY ARG GLU LYS PHE ASN HIS ARG TRP TRP GLY GLY SEQRES 18 A 829 GLN PRO LEU TRP ILE THR ALA THR LYS GLN GLY VAL ARG SEQRES 19 A 829 ALA GLY THR PHE PHE TRP SER VAL SER ILE PRO HIS GLU SEQRES 20 A 829 ARG ARG ILE LEU THR ILE LEU GLN TRP LEU SER LEU PRO SEQRES 21 A 829 ASP ASN GLU ARG PRO SER VAL TYR ALA PHE TYR SER GLU SEQRES 22 A 829 GLN PRO ASP PHE SER GLY HIS LYS TYR GLY PRO PHE GLY SEQRES 23 A 829 PRO GLU MET THR ASN PRO LEU ARG GLU ILE ASP LYS THR SEQRES 24 A 829 VAL GLY GLN LEU MET ASP GLY LEU LYS GLN LEU LYS LEU SEQRES 25 A 829 HIS ARG CYS VAL ASN VAL ILE PHE VAL GLY ASP HIS GLY SEQRES 26 A 829 MET GLU ASP VAL THR CYS ASP ARG THR GLU PHE LEU SER SEQRES 27 A 829 ASN TYR LEU THR ASN VAL ASP ASP ILE THR LEU VAL PRO SEQRES 28 A 829 GLY THR LEU GLY ARG ILE ARG PRO LYS ILE PRO ASN ASN SEQRES 29 A 829 LEU LYS TYR ASP PRO LYS ALA ILE ILE ALA ASN LEU THR SEQRES 30 A 829 CYS LYS LYS PRO ASP GLN HIS PHE LYS PRO TYR MET LYS SEQRES 31 A 829 GLN HIS LEU PRO LYS ARG LEU HIS TYR ALA ASN ASN ARG SEQRES 32 A 829 ARG ILE GLU ASP LEU HIS LEU LEU VAL GLU ARG ARG TRP SEQRES 33 A 829 HIS VAL ALA ARG LYS PRO LEU ASP VAL TYR LYS LYS PRO SEQRES 34 A 829 SER GLY LYS CYS PHE PHE GLN GLY ASP HIS GLY PHE ASP SEQRES 35 A 829 ASN LYS VAL ASN SER MET GLN THR VAL PHE VAL GLY TYR SEQRES 36 A 829 GLY PRO THR PHE LYS TYR ARG THR LYS VAL PRO PRO PHE SEQRES 37 A 829 GLU ASN ILE GLU LEU TYR ASN VAL MET CYS ASP LEU LEU SEQRES 38 A 829 GLY LEU LYS PRO ALA PRO ASN ASN GLY THR HIS GLY SER SEQRES 39 A 829 LEU ASN HIS LEU LEU ARG THR ASN THR PHE ARG PRO THR SEQRES 40 A 829 LEU PRO GLU GLU VAL SER ARG PRO ASN TYR PRO GLY ILE SEQRES 41 A 829 MET TYR LEU GLN SER ASP PHE ASP LEU GLY CYS THR CYS SEQRES 42 A 829 ASP ASP LYS ASN LYS LEU GLU GLU LEU ASN LYS ARG LEU SEQRES 43 A 829 HIS THR LYS GLY SER THR GLU GLU ARG HIS LEU LEU TYR SEQRES 44 A 829 GLY ARG PRO ALA VAL LEU TYR ARG THR SER TYR ASP ILE SEQRES 45 A 829 LEU TYR HIS THR ASP PHE GLU SER GLY TYR SER GLU ILE SEQRES 46 A 829 PHE LEU MET PRO LEU TRP THR SER TYR THR ILE SER LYS SEQRES 47 A 829 GLN ALA GLU VAL SER SER ILE PRO GLU HIS LEU THR ASN SEQRES 48 A 829 CYS VAL ARG PRO ASP VAL ARG VAL SER PRO GLY PHE SER SEQRES 49 A 829 GLN ASN CYS LEU ALA TYR LYS ASN ASP LYS GLN MET SER SEQRES 50 A 829 TYR GLY PHE LEU PHE PRO PRO TYR LEU SER SER SER PRO SEQRES 51 A 829 GLU ALA LYS TYR ASP ALA PHE LEU VAL THR ASN MET VAL SEQRES 52 A 829 PRO MET TYR PRO ALA PHE LYS ARG VAL TRP THR TYR PHE SEQRES 53 A 829 GLN ARG VAL LEU VAL LYS LYS TYR ALA SER GLU ARG ASN SEQRES 54 A 829 GLY VAL ASN VAL ILE SER GLY PRO ILE PHE ASP TYR ASN SEQRES 55 A 829 TYR ASN GLY LEU ARG ASP ILE GLU ASP GLU ILE LYS GLN SEQRES 56 A 829 TYR VAL GLU GLY SER SER ILE PRO VAL PRO THR HIS TYR SEQRES 57 A 829 TYR SER ILE ILE THR SER CYS LEU ASP PHE THR GLN PRO SEQRES 58 A 829 ALA ASP LYS CYS ASP GLY PRO LEU SER VAL SER SER PHE SEQRES 59 A 829 ILE LEU PRO HIS ARG PRO ASP ASN ASP GLU SER CYS ASN SEQRES 60 A 829 SER SER GLU ASP GLU SER LYS TRP VAL GLU GLU LEU MET SEQRES 61 A 829 LYS MET HIS THR ALA ARG VAL ARG ASP ILE GLU HIS LEU SEQRES 62 A 829 THR GLY LEU ASP PHE TYR ARG LYS THR SER ARG SER TYR SEQRES 63 A 829 SER GLU ILE LEU THR LEU LYS THR TYR LEU HIS THR TYR SEQRES 64 A 829 GLU SER GLU ILE HIS HIS HIS HIS HIS HIS HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET MAN B 5 11 HET MAN B 6 11 HET NAG A 901 14 HET NAG A 908 14 HET ZN A 909 1 HET ZN A 910 1 HET PO4 A 911 5 HET CL A 912 1 HET O9W A 913 33 HET CL A 914 1 HET NA A 915 1 HET NA A 916 1 HET NA A 917 1 HET NA A 918 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION HETNAM O9W (~{E})-3-[4-CHLORANYL-2-[(5-METHYL-1,2,3,4-TETRAZOL-2- HETNAM 2 O9W YL)METHYL]PHENYL]-1-[(2~{R})-4-[(4-FLUOROPHENYL) HETNAM 3 O9W METHYL]-2-METHYL-PIPERAZIN-1-YL]PROP-2-EN-1-ONE HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN 3(C6 H12 O6) FORMUL 5 ZN 2(ZN 2+) FORMUL 7 PO4 O4 P 3- FORMUL 8 CL 2(CL 1-) FORMUL 9 O9W C24 H26 CL F N6 O FORMUL 11 NA 4(NA 1+) FORMUL 15 HOH *489(H2 O) HELIX 1 AA1 LEU A 78 SER A 83 5 6 HELIX 2 AA2 ASP A 88 LEU A 94 1 7 HELIX 3 AA3 THR A 103 CYS A 107 5 5 HELIX 4 AA4 ASP A 122 GLY A 127 1 6 HELIX 5 AA5 ASN A 132 LYS A 138 1 7 HELIX 6 AA6 HIS A 142 ASP A 146 5 5 HELIX 7 AA7 ARG A 174 VAL A 184 5 11 HELIX 8 AA8 MET A 185 GLY A 195 1 11 HELIX 9 AA9 LYS A 208 GLY A 219 1 12 HELIX 10 AB1 TYR A 221 GLY A 226 1 6 HELIX 11 AB2 ARG A 246 TRP A 254 5 9 HELIX 12 AB3 PRO A 258 GLN A 266 1 9 HELIX 13 AB4 PRO A 280 SER A 293 1 14 HELIX 14 AB5 ASP A 311 GLY A 318 1 8 HELIX 15 AB6 GLY A 321 GLU A 323 5 3 HELIX 16 AB7 MET A 324 LEU A 345 1 22 HELIX 17 AB8 SER A 373 TYR A 375 5 3 HELIX 18 AB9 ASP A 403 LEU A 411 1 9 HELIX 19 AC1 GLN A 426 LEU A 428 5 3 HELIX 20 AC2 PRO A 429 HIS A 433 5 5 HELIX 21 AC3 VAL A 480 GLN A 484 5 5 HELIX 22 AC4 GLU A 507 LEU A 516 1 10 HELIX 23 AC5 LEU A 530 LEU A 534 5 5 HELIX 24 AC6 LEU A 558 PHE A 562 5 5 HELIX 25 AC7 LYS A 588 LEU A 596 1 9 HELIX 26 AC8 PRO A 645 THR A 649 5 5 HELIX 27 AC9 SER A 659 SER A 663 5 5 HELIX 28 AD1 ASN A 665 ASP A 672 1 8 HELIX 29 AD2 PRO A 682 SER A 686 5 5 HELIX 30 AD3 SER A 688 PHE A 696 1 9 HELIX 31 AD4 LEU A 697 THR A 699 5 3 HELIX 32 AD5 TYR A 705 VAL A 718 1 14 HELIX 33 AD6 VAL A 718 ASN A 728 1 11 HELIX 34 AD7 ILE A 748 ILE A 752 5 5 HELIX 35 AD8 PRO A 780 CYS A 784 5 5 HELIX 36 AD9 ASP A 810 LYS A 813 5 4 HELIX 37 AE1 TRP A 814 HIS A 822 1 9 HELIX 38 AE2 ARG A 825 GLY A 834 1 10 HELIX 39 AE3 SER A 844 TYR A 854 1 11 SHEET 1 AA1 6 VAL A 302 PRO A 310 0 SHEET 2 AA1 6 LEU A 165 ASP A 171 1 N ILE A 167 O TYR A 303 SHEET 3 AA1 6 ASN A 352 GLY A 357 1 O ILE A 354 N PHE A 168 SHEET 4 AA1 6 THR A 485 TYR A 490 -1 O TYR A 490 N VAL A 353 SHEET 5 AA1 6 THR A 196 ARG A 202 -1 N THR A 196 O GLY A 489 SHEET 6 AA1 6 THR A 498 LYS A 499 1 O THR A 498 N HIS A 197 SHEET 1 AA2 6 VAL A 302 PRO A 310 0 SHEET 2 AA2 6 LEU A 165 ASP A 171 1 N ILE A 167 O TYR A 303 SHEET 3 AA2 6 ASN A 352 GLY A 357 1 O ILE A 354 N PHE A 168 SHEET 4 AA2 6 THR A 485 TYR A 490 -1 O TYR A 490 N VAL A 353 SHEET 5 AA2 6 THR A 196 ARG A 202 -1 N THR A 196 O GLY A 489 SHEET 6 AA2 6 PHE A 503 GLU A 504 1 O PHE A 503 N ARG A 202 SHEET 1 AA3 2 MET A 232 ASP A 234 0 SHEET 2 AA3 2 ALA A 239 PHE A 241 -1 O PHE A 241 N MET A 232 SHEET 1 AA4 2 GLU A 362 ASP A 363 0 SHEET 2 AA4 2 GLY A 472 ASP A 473 -1 O ASP A 473 N GLU A 362 SHEET 1 AA5 2 THR A 369 PHE A 371 0 SHEET 2 AA5 2 HIS A 452 ALA A 454 1 O HIS A 452 N GLU A 370 SHEET 1 AA6 4 ILE A 382 VAL A 385 0 SHEET 2 AA6 4 LEU A 389 PRO A 394 -1 O ARG A 393 N THR A 383 SHEET 3 AA6 4 LEU A 443 VAL A 447 -1 O LEU A 445 N GLY A 390 SHEET 4 AA6 4 PHE A 420 MET A 424 -1 N TYR A 423 O HIS A 444 SHEET 1 AA7 2 ALA A 602 VAL A 603 0 SHEET 2 AA7 2 LEU A 835 ASP A 836 -1 O ASP A 836 N ALA A 602 SHEET 1 AA8 7 TYR A 609 TYR A 613 0 SHEET 2 AA8 7 GLU A 618 SER A 622 -1 O TYR A 621 N ASP A 610 SHEET 3 AA8 7 PRO A 628 ILE A 635 -1 O LEU A 629 N GLY A 620 SHEET 4 AA8 7 VAL A 730 ILE A 737 -1 O VAL A 732 N TYR A 633 SHEET 5 AA8 7 HIS A 766 CYS A 774 -1 O THR A 772 N ASN A 731 SHEET 6 AA8 7 LEU A 788 PRO A 796 -1 O SER A 791 N ILE A 771 SHEET 7 AA8 7 THR A 823 ALA A 824 -1 O ALA A 824 N SER A 792 SHEET 1 AA9 2 SER A 676 PHE A 679 0 SHEET 2 AA9 2 MET A 701 MET A 704 -1 O VAL A 702 N GLY A 678 SSBOND 1 CYS A 58 CYS A 75 1555 1555 2.03 SSBOND 2 CYS A 62 CYS A 93 1555 1555 2.05 SSBOND 3 CYS A 73 CYS A 86 1555 1555 2.05 SSBOND 4 CYS A 79 CYS A 85 1555 1555 2.04 SSBOND 5 CYS A 102 CYS A 119 1555 1555 2.02 SSBOND 6 CYS A 107 CYS A 137 1555 1555 2.04 SSBOND 7 CYS A 117 CYS A 130 1555 1555 2.04 SSBOND 8 CYS A 123 CYS A 129 1555 1555 2.03 SSBOND 9 CYS A 148 CYS A 194 1555 1555 2.00 SSBOND 10 CYS A 156 CYS A 350 1555 1555 2.03 SSBOND 11 CYS A 366 CYS A 468 1555 1555 2.04 SSBOND 12 CYS A 413 CYS A 805 1555 1555 2.03 SSBOND 13 CYS A 566 CYS A 666 1555 1555 2.03 SSBOND 14 CYS A 568 CYS A 651 1555 1555 2.02 SSBOND 15 CYS A 774 CYS A 784 1555 1555 2.05 LINK ND2 ASN A 53 C1 NAG A 901 1555 1555 1.43 LINK ND2 ASN A 410 C1 NAG A 908 1555 1555 1.43 LINK ND2 ASN A 524 C1 NAG B 1 1555 1555 1.43 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.38 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.41 LINK O6 BMA B 3 C1 MAN B 4 1555 1555 1.41 LINK O3 MAN B 4 C1 MAN B 5 1555 1555 1.43 LINK O2 MAN B 5 C1 MAN B 6 1555 1555 1.42 LINK O ARG A 162 NA NA A 917 1555 1555 2.88 LINK OD1 ASP A 171 ZN ZN A 909 1555 1555 1.86 LINK O TYR A 205 NA NA A 918 1555 1555 2.58 LINK OG1 THR A 209 ZN ZN A 909 1555 1555 1.84 LINK OG SER A 301 NA NA A 917 1555 1555 3.10 LINK OD1 ASP A 311 ZN ZN A 910 1555 1555 2.15 LINK OD2 ASP A 311 ZN ZN A 910 1555 1555 2.68 LINK NE2 HIS A 315 ZN ZN A 910 1555 1555 2.00 LINK OD2 ASP A 358 ZN ZN A 909 1555 1555 2.19 LINK NE2 HIS A 359 ZN ZN A 909 1555 1555 2.02 LINK O LEU A 432 NA NA A 918 1555 1555 2.68 LINK NE2 HIS A 474 ZN ZN A 910 1555 1555 1.97 LINK OE1 GLU A 592 NA NA A 916 1555 1555 2.24 LINK OH TYR A 613 NA NA A 916 1555 1555 3.06 LINK OE2 GLU A 618 NA NA A 916 1555 1555 2.70 LINK OD1 ASP A 739 NA NA A 915 1555 1555 2.36 LINK OD1 ASN A 741 NA NA A 915 1555 1555 2.31 LINK OD1 ASN A 743 NA NA A 915 1555 1555 2.36 LINK O LEU A 745 NA NA A 915 1555 1555 2.37 LINK OD1 ASP A 747 NA NA A 915 1555 1555 2.41 LINK ZN ZN A 910 O2 PO4 A 911 1555 1555 2.42 LINK ZN ZN A 910 O4 PO4 A 911 1555 1555 2.48 LINK NA NA A 915 O HOH A1160 1555 1555 2.36 LINK NA NA A 916 O HOH A1090 1555 1555 2.69 LINK NA NA A 917 O HOH A1287 1555 1555 2.24 LINK NA NA A 917 O HOH A1420 1555 1555 2.67 LINK NA NA A 918 O HOH A1004 1555 1555 2.63 LINK NA NA A 918 O HOH A1305 1555 1555 2.84 CISPEP 1 PRO A 70 PRO A 71 0 9.34 CISPEP 2 TYR A 205 PRO A 206 0 -6.00 CISPEP 3 GLN A 309 PRO A 310 0 6.19 CRYST1 61.257 61.199 67.827 87.55 73.05 80.76 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016325 -0.002656 -0.004987 0.00000 SCALE2 0.000000 0.016555 0.000071 0.00000 SCALE3 0.000000 0.000000 0.015413 0.00000