HEADER BIOSYNTHETIC PROTEIN 26-FEB-20 6Y6G TITLE LIPOPOLYSACCHARIDE OUTER CORE GALACTOSYLTRANSFERASE WAAB APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOPOLYSACCHARIDE 1,6-GALACTOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UDP-D-GALACTOSE--(GLUCOSYL)LIPOPOLYSACCHARIDE-ALPHA-1,3-D- COMPND 5 GALACTOSYLTRANSFERASE; COMPND 6 EC: 2.4.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: WAAB SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM (STRAIN LT2 / SGSC1412 / SOURCE 3 ATCC 700720); SOURCE 4 ORGANISM_TAXID: 99287; SOURCE 5 GENE: RFAB, WAAB, STM3719; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS WAAB, LIPOPOLYSACCHARIDE, GALACTOSYLTRANSFERASE, LIPOPOLYSACCHARIDE KEYWDS 2 OUTER CORE, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.Y.ZHANG,G.ASHWORTH,Z.S.WANG,X.F.ZHU,C.J.DONG REVDAT 2 15-MAY-24 6Y6G 1 REMARK REVDAT 1 31-MAR-21 6Y6G 0 JRNL AUTH Z.Y.ZHANG,G.ASHWORTH,Z.S.WANG,X.F.ZHU,C.J.DONG JRNL TITL STRUCTURAL INSIGHTS INTO THE LIPOPOLYSACCHARIDE OUTER CORE JRNL TITL 2 GALACTOSYLTRANSFERASE WAAB JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 42052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2225 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2660 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 138 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2837 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 327 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.11000 REMARK 3 B22 (A**2) : -1.11000 REMARK 3 B33 (A**2) : 2.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.146 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.650 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2912 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2678 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3940 ; 1.311 ; 1.632 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6217 ; 1.290 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 356 ; 6.707 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;33.216 ;22.766 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 497 ;13.080 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;11.644 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 380 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3234 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 634 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5590 ; 0.549 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 357 REMARK 3 ORIGIN FOR THE GROUP (A): 106.3279 130.3869 91.3015 REMARK 3 T TENSOR REMARK 3 T11: 0.0334 T22: 0.0555 REMARK 3 T33: 0.0250 T12: 0.0187 REMARK 3 T13: -0.0179 T23: -0.0340 REMARK 3 L TENSOR REMARK 3 L11: 0.5822 L22: 0.0465 REMARK 3 L33: 0.4154 L12: -0.0900 REMARK 3 L13: 0.3266 L23: -0.1336 REMARK 3 S TENSOR REMARK 3 S11: -0.0759 S12: -0.0937 S13: 0.0983 REMARK 3 S21: 0.0019 S22: 0.0210 S23: -0.0179 REMARK 3 S31: -0.0261 S32: -0.0460 S33: 0.0549 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6Y6G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292106975. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 81 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.823 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44277 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 67.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 60.10 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.2 REMARK 200 DATA REDUNDANCY IN SHELL : 18.20 REMARK 200 R MERGE FOR SHELL (I) : 0.86300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1% TRYPTONE, 1MM SODIUM AZIDE, 0.05M REMARK 280 HEPES PH7.0 AND 20% W/V PEG 3350., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.22000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.13500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.13500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.33000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.13500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.13500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.11000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.13500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.13500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 66.33000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.13500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.13500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.11000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 44.22000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 407 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 358 REMARK 465 LYS A 359 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 GLU A 54 CG CD OE1 OE2 REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 ARG A 177 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 188 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET A 1 O ILE A 34 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 678 O HOH A 678 7557 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 28 2.13 -67.13 REMARK 500 ASN A 35 112.91 73.83 REMARK 500 LEU A 52 37.44 -98.81 REMARK 500 TRP A 117 62.42 -151.77 REMARK 500 SER A 121 123.58 -35.47 REMARK 500 HIS A 127 30.19 70.65 REMARK 500 TYR A 162 -143.95 59.17 REMARK 500 GLU A 192 -123.53 -117.38 REMARK 500 LYS A 256 -45.42 79.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 291 GLY A 292 -33.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 726 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH A 727 DISTANCE = 6.84 ANGSTROMS DBREF 6Y6G A 1 359 UNP Q06994 RFAB_SALTY 1 359 SEQRES 1 A 359 MET LYS ILE ALA PHE ILE GLY GLU ALA VAL SER GLY PHE SEQRES 2 A 359 GLY GLY MET GLU THR VAL ILE SER ASN VAL ILE HIS THR SEQRES 3 A 359 PHE GLU ASN SER SER PRO LYS ILE ASN CYS GLU MET PHE SEQRES 4 A 359 PHE PHE CYS ARG ASN ASP LYS MET ASP LYS ALA TRP LEU SEQRES 5 A 359 LYS GLU ILE LYS TYR ALA GLN SER PHE SER ASN ILE LYS SEQRES 6 A 359 LEU SER PHE LEU ARG ARG ALA LYS HIS VAL TYR ASN PHE SEQRES 7 A 359 SER GLN TRP LEU LYS GLU THR SER PRO ASP ILE VAL ILE SEQRES 8 A 359 CYS ILE ASP VAL ILE SER CYS LEU TYR ALA ASN LYS ALA SEQRES 9 A 359 ARG LYS LYS SER GLY LYS HIS PHE THR ILE PHE SER TRP SEQRES 10 A 359 PRO HIS PHE SER LEU ASP HIS LYS LYS HIS ALA GLU CYS SEQRES 11 A 359 ILE THR TYR ALA ASP TYR HIS LEU ALA ILE SER SER GLY SEQRES 12 A 359 ILE LYS GLU GLN ILE MET ALA ARG GLY ILE SER ALA GLN SEQRES 13 A 359 ASP ILE SER VAL VAL TYR ASN PRO VAL SER ILE LYS THR SEQRES 14 A 359 VAL ILE VAL PRO PRO PRO GLU ARG ASP LYS PRO ALA VAL SEQRES 15 A 359 PHE LEU TYR VAL GLY ARG LEU LYS PHE GLU GLY GLN LYS SEQRES 16 A 359 ARG VAL LYS ASP LEU PHE ASP GLY LEU ALA ARG THR THR SEQRES 17 A 359 GLY GLU TRP GLN LEU HIS ILE ILE GLY ASP GLY SER ASP SEQRES 18 A 359 PHE GLU LYS CYS GLN ALA TYR SER ARG GLU LEU GLY ILE SEQRES 19 A 359 GLU GLN ARG VAL ILE TRP TYR GLY TRP GLN SER ALA PRO SEQRES 20 A 359 TRP GLN VAL VAL GLN GLN LYS ILE LYS ASN VAL THR ALA SEQRES 21 A 359 LEU LEU LEU THR SER ALA PHE GLU GLY PHE PRO MET THR SEQRES 22 A 359 LEU LEU GLU ALA MET SER TYR GLY ILE PRO CYS ILE SER SEQRES 23 A 359 SER ASP CYS MET SER GLY PRO ARG ASP MET ILE LYS PRO SEQRES 24 A 359 GLY LEU ASN GLY GLU LEU TYR THR PRO GLY ALA ILE ASP SEQRES 25 A 359 ASP PHE VAL GLY HIS LEU ASN ARG VAL ILE SER GLY GLU SEQRES 26 A 359 VAL LYS TYR GLN HIS ASP ILE ILE PRO GLY THR ILE GLU SEQRES 27 A 359 ARG PHE TYR ASP VAL LEU TYR PHE LYS ASN PHE ASN ASN SEQRES 28 A 359 ALA ILE PHE SER LYS LEU GLN LYS FORMUL 2 HOH *327(H2 O) HELIX 1 AA1 GLY A 14 GLU A 28 1 15 HELIX 2 AA2 LYS A 49 LYS A 53 5 5 HELIX 3 AA3 LEU A 66 SER A 86 1 21 HELIX 4 AA4 ASP A 94 GLY A 109 1 16 HELIX 5 AA5 SER A 121 LYS A 125 5 5 HELIX 6 AA6 HIS A 127 ALA A 134 5 8 HELIX 7 AA7 SER A 141 ARG A 151 1 11 HELIX 8 AA8 SER A 154 GLN A 156 5 3 HELIX 9 AA9 ARG A 196 ARG A 206 1 11 HELIX 10 AB1 ASP A 221 GLY A 233 1 13 HELIX 11 AB2 ILE A 234 GLN A 236 5 3 HELIX 12 AB3 ALA A 246 LYS A 254 1 9 HELIX 13 AB4 PRO A 271 TYR A 280 1 10 HELIX 14 AB5 GLY A 292 ILE A 297 1 6 HELIX 15 AB6 ALA A 310 GLY A 324 1 15 HELIX 16 AB7 GLN A 329 PHE A 340 5 12 HELIX 17 AB8 TYR A 341 SER A 355 1 15 SHEET 1 AA1 7 LYS A 56 PHE A 61 0 SHEET 2 AA1 7 CYS A 36 CYS A 42 1 N CYS A 42 O SER A 60 SHEET 3 AA1 7 ILE A 3 GLU A 8 1 N PHE A 5 O GLU A 37 SHEET 4 AA1 7 ILE A 89 CYS A 92 1 O ILE A 91 N ALA A 4 SHEET 5 AA1 7 THR A 113 SER A 116 1 O PHE A 115 N VAL A 90 SHEET 6 AA1 7 TYR A 136 ALA A 139 1 O LEU A 138 N SER A 116 SHEET 7 AA1 7 ILE A 158 VAL A 160 1 O SER A 159 N ALA A 139 SHEET 1 AA2 6 VAL A 238 TRP A 240 0 SHEET 2 AA2 6 TRP A 211 ILE A 216 1 N LEU A 213 O ILE A 239 SHEET 3 AA2 6 ALA A 181 VAL A 186 1 N PHE A 183 O GLN A 212 SHEET 4 AA2 6 ALA A 260 LEU A 263 1 O LEU A 262 N LEU A 184 SHEET 5 AA2 6 CYS A 284 SER A 287 1 O ILE A 285 N LEU A 261 SHEET 6 AA2 6 GLY A 303 TYR A 306 1 O GLU A 304 N SER A 286 CISPEP 1 MET A 290 SER A 291 0 -18.33 CRYST1 104.270 104.270 88.440 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009590 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009590 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011307 0.00000