HEADER VIRAL PROTEIN 27-FEB-20 6Y6P TITLE STRUCTURE OF HANTAAN VIRUS ENVELOPE GLYCOPROTEIN GN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: M POLYPROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HANTAAN ORTHOHANTAVIRUS; SOURCE 3 ORGANISM_TAXID: 1980471; SOURCE 4 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 5 EXPRESSION_SYSTEM_COMMON: FRUIT FLY; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 7 EXPRESSION_SYSTEM_CELL: SCHNEIDER S2 CELLS; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PT350 KEYWDS CLASS-II FUSION PROTEIN HANTAVIRUS BUNYAVIRUS, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.SERRIS,F.A.REY,P.GUARDADO-CALVO REVDAT 3 24-JAN-24 6Y6P 1 REMARK REVDAT 2 28-OCT-20 6Y6P 1 JRNL REVDAT 1 14-OCT-20 6Y6P 0 JRNL AUTH A.SERRIS,R.STASS,E.A.BIGNON,N.A.MUENA,J.C.MANUGUERRA, JRNL AUTH 2 R.K.JANGRA,S.LI,K.CHANDRAN,N.D.TISCHLER,J.T.HUISKONEN, JRNL AUTH 3 F.A.REY,P.GUARDADO-CALVO JRNL TITL THE HANTAVIRUS SURFACE GLYCOPROTEIN LATTICE AND ITS FUSION JRNL TITL 2 CONTROL MECHANISM. JRNL REF CELL V. 183 442 2020 JRNL REFN ISSN 1097-4172 JRNL PMID 32937107 JRNL DOI 10.1016/J.CELL.2020.08.023 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 35189 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.750 REMARK 3 FREE R VALUE TEST SET COUNT : 1673 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.3440 - 4.4353 0.99 2984 124 0.1468 0.1837 REMARK 3 2 4.4353 - 3.5214 1.00 2863 152 0.1402 0.1725 REMARK 3 3 3.5214 - 3.0766 1.00 2816 138 0.1625 0.1912 REMARK 3 4 3.0766 - 2.7954 1.00 2797 145 0.1805 0.2247 REMARK 3 5 2.7954 - 2.5951 1.00 2807 132 0.1831 0.2316 REMARK 3 6 2.5951 - 2.4422 1.00 2748 164 0.1916 0.2370 REMARK 3 7 2.4422 - 2.3199 1.00 2790 127 0.1864 0.2570 REMARK 3 8 2.3199 - 2.2189 1.00 2785 118 0.1893 0.2672 REMARK 3 9 2.2189 - 2.1335 1.00 2733 164 0.1931 0.2537 REMARK 3 10 2.1335 - 2.0599 1.00 2767 124 0.2042 0.2934 REMARK 3 11 2.0599 - 1.9955 1.00 2765 132 0.2100 0.2888 REMARK 3 12 1.9955 - 1.9385 0.96 2661 153 0.2299 0.2519 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:32) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7937 17.2423 -14.0946 REMARK 3 T TENSOR REMARK 3 T11: 0.3122 T22: 0.2985 REMARK 3 T33: 0.2813 T12: -0.0192 REMARK 3 T13: 0.0199 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 0.7295 L22: 2.1850 REMARK 3 L33: 0.8122 L12: 0.0549 REMARK 3 L13: 0.4536 L23: 1.3285 REMARK 3 S TENSOR REMARK 3 S11: -0.0033 S12: -0.0560 S13: 0.0828 REMARK 3 S21: -0.3170 S22: 0.0919 S23: -0.1841 REMARK 3 S31: -0.2456 S32: 0.1200 S33: 0.0012 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 33:48) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0359 7.5400 -12.0777 REMARK 3 T TENSOR REMARK 3 T11: 0.5745 T22: 0.5708 REMARK 3 T33: 0.5619 T12: 0.0411 REMARK 3 T13: -0.1121 T23: -0.0888 REMARK 3 L TENSOR REMARK 3 L11: 0.3449 L22: 1.1439 REMARK 3 L33: 0.4410 L12: 0.1628 REMARK 3 L13: -0.2626 L23: 0.4885 REMARK 3 S TENSOR REMARK 3 S11: -0.0250 S12: 0.1416 S13: -0.1723 REMARK 3 S21: 1.2792 S22: 0.4144 S23: -0.6442 REMARK 3 S31: 0.8253 S32: 0.6838 S33: 0.0092 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 49:72) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3270 -5.5839 -24.4035 REMARK 3 T TENSOR REMARK 3 T11: 0.3247 T22: 0.3305 REMARK 3 T33: 0.3717 T12: 0.0136 REMARK 3 T13: 0.0231 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 2.7998 L22: 3.1676 REMARK 3 L33: 1.1359 L12: -0.0459 REMARK 3 L13: -1.4301 L23: -0.8383 REMARK 3 S TENSOR REMARK 3 S11: 0.0390 S12: 0.1718 S13: 0.0052 REMARK 3 S21: -0.0338 S22: 0.2476 S23: -0.1006 REMARK 3 S31: 0.1271 S32: 0.6894 S33: 0.0043 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 73:151) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8873 6.7743 -13.9877 REMARK 3 T TENSOR REMARK 3 T11: 0.2724 T22: 0.3041 REMARK 3 T33: 0.2602 T12: 0.0109 REMARK 3 T13: 0.0157 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.3581 L22: 2.8446 REMARK 3 L33: 1.1529 L12: -0.0356 REMARK 3 L13: 0.2694 L23: 1.7216 REMARK 3 S TENSOR REMARK 3 S11: -0.0450 S12: 0.0481 S13: -0.0148 REMARK 3 S21: 0.1621 S22: 0.1017 S23: -0.1045 REMARK 3 S31: 0.1493 S32: 0.1572 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 152:173) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5617 25.8897 -10.4415 REMARK 3 T TENSOR REMARK 3 T11: 0.3227 T22: 0.4069 REMARK 3 T33: 0.2739 T12: -0.0340 REMARK 3 T13: 0.0075 T23: 0.0343 REMARK 3 L TENSOR REMARK 3 L11: 1.2423 L22: 0.6079 REMARK 3 L33: 0.2022 L12: -0.4107 REMARK 3 L13: -0.3638 L23: 0.1403 REMARK 3 S TENSOR REMARK 3 S11: -0.2796 S12: 0.1158 S13: 0.0323 REMARK 3 S21: -0.1436 S22: 0.1165 S23: 0.0081 REMARK 3 S31: -0.0085 S32: -0.1196 S33: 0.0005 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 174:209) REMARK 3 ORIGIN FOR THE GROUP (A): -17.2996 6.3149 -7.6000 REMARK 3 T TENSOR REMARK 3 T11: 0.3902 T22: 0.3838 REMARK 3 T33: 0.4395 T12: -0.0652 REMARK 3 T13: 0.0797 T23: -0.0909 REMARK 3 L TENSOR REMARK 3 L11: 1.5307 L22: 0.4209 REMARK 3 L33: 0.6757 L12: -1.2144 REMARK 3 L13: -1.3674 L23: 0.5247 REMARK 3 S TENSOR REMARK 3 S11: -0.2719 S12: 0.1832 S13: -0.4885 REMARK 3 S21: 0.0355 S22: 0.0247 S23: 0.5083 REMARK 3 S31: 0.2329 S32: -0.3119 S33: -0.0101 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 210:220) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4879 -11.2875 -12.2640 REMARK 3 T TENSOR REMARK 3 T11: 0.7909 T22: 0.9298 REMARK 3 T33: 1.2220 T12: -0.1172 REMARK 3 T13: 0.2096 T23: -0.1659 REMARK 3 L TENSOR REMARK 3 L11: 0.0991 L22: 0.0730 REMARK 3 L33: 0.0594 L12: 0.0946 REMARK 3 L13: 0.0333 L23: 0.0488 REMARK 3 S TENSOR REMARK 3 S11: -0.0643 S12: 0.0439 S13: -0.6245 REMARK 3 S21: 0.2192 S22: -0.6788 S23: 0.0437 REMARK 3 S31: 1.1339 S32: -0.4239 S33: -0.0003 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 221:259) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7974 5.1047 -9.2227 REMARK 3 T TENSOR REMARK 3 T11: 0.3427 T22: 0.3669 REMARK 3 T33: 0.6374 T12: -0.0637 REMARK 3 T13: 0.1989 T23: -0.1671 REMARK 3 L TENSOR REMARK 3 L11: 0.6368 L22: 1.4417 REMARK 3 L33: 1.1944 L12: 0.5902 REMARK 3 L13: 0.2047 L23: 0.0528 REMARK 3 S TENSOR REMARK 3 S11: -0.1699 S12: 0.0918 S13: 0.0527 REMARK 3 S21: 0.3373 S22: -0.4322 S23: 1.4153 REMARK 3 S31: 0.2572 S32: -0.5038 S33: -0.1396 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 270:313) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0385 -7.6644 -25.8664 REMARK 3 T TENSOR REMARK 3 T11: 0.2444 T22: 0.2732 REMARK 3 T33: 0.2817 T12: 0.0330 REMARK 3 T13: 0.0054 T23: -0.0788 REMARK 3 L TENSOR REMARK 3 L11: 2.2030 L22: 2.2483 REMARK 3 L33: 2.2896 L12: 0.4098 REMARK 3 L13: -0.1475 L23: 2.2370 REMARK 3 S TENSOR REMARK 3 S11: 0.0298 S12: 0.2195 S13: -0.1493 REMARK 3 S21: 0.0787 S22: -0.3246 S23: 0.4149 REMARK 3 S31: 0.0472 S32: -0.0450 S33: -0.0008 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 314:353) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2133 2.3191 -17.2587 REMARK 3 T TENSOR REMARK 3 T11: 0.2899 T22: 0.3181 REMARK 3 T33: 0.3725 T12: -0.0321 REMARK 3 T13: 0.0450 T23: -0.1049 REMARK 3 L TENSOR REMARK 3 L11: 1.8505 L22: 0.7804 REMARK 3 L33: 1.2149 L12: -1.8764 REMARK 3 L13: -1.2732 L23: 1.0559 REMARK 3 S TENSOR REMARK 3 S11: -0.0580 S12: 0.2456 S13: -0.2329 REMARK 3 S21: 0.3592 S22: -0.2710 S23: 0.4473 REMARK 3 S31: 0.2098 S32: -0.2857 S33: -0.0183 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Y6P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-FEB-20. REMARK 100 THE DEPOSITION ID IS D_1292106982. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35256 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.938 REMARK 200 RESOLUTION RANGE LOW (A) : 35.344 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 1.11700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.1 REMARK 200 STARTING MODEL: 5OPG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25%(W/V) PEG 6000, 0.1M HEPES 7.5, REMARK 280 0.1M LICL, 20% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.79800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.01650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.11200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.01650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.79800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.11200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 260 REMARK 465 GLU A 261 REMARK 465 ASP A 262 REMARK 465 HIS A 263 REMARK 465 ASP A 264 REMARK 465 LEU A 265 REMARK 465 ALA A 266 REMARK 465 GLY A 267 REMARK 465 GLU A 268 REMARK 465 GLU A 269 REMARK 465 GLU A 354 REMARK 465 ASP A 355 REMARK 465 ASP A 356 REMARK 465 ASP A 357 REMARK 465 ASP A 358 REMARK 465 LYS A 359 REMARK 465 ALA A 360 REMARK 465 GLY A 361 REMARK 465 TRP A 362 REMARK 465 SER A 363 REMARK 465 HIS A 364 REMARK 465 PRO A 365 REMARK 465 GLN A 366 REMARK 465 PHE A 367 REMARK 465 GLU A 368 REMARK 465 LYS A 369 REMARK 465 GLY A 370 REMARK 465 GLY A 371 REMARK 465 GLY A 372 REMARK 465 SER A 373 REMARK 465 GLY A 374 REMARK 465 GLY A 375 REMARK 465 GLY A 376 REMARK 465 SER A 377 REMARK 465 GLY A 378 REMARK 465 GLY A 379 REMARK 465 GLY A 380 REMARK 465 SER A 381 REMARK 465 TRP A 382 REMARK 465 SER A 383 REMARK 465 HIS A 384 REMARK 465 PRO A 385 REMARK 465 GLN A 386 REMARK 465 PHE A 387 REMARK 465 GLU A 388 REMARK 465 LYS A 389 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 69 O HOH A 501 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 64 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 48 39.31 -89.04 REMARK 500 ASP A 68 -159.95 -74.20 REMARK 500 SER A 70 59.63 -118.20 REMARK 500 GLN A 74 43.73 -108.50 REMARK 500 LYS A 95 -4.29 86.62 REMARK 500 THR A 158 -23.29 -145.61 REMARK 500 GLU A 212 48.03 32.24 REMARK 500 ASP A 217 36.57 36.35 REMARK 500 THR A 218 -8.56 -55.59 REMARK 500 ASN A 233 95.60 -172.42 REMARK 500 ASP A 243 37.36 71.10 REMARK 500 TYR A 303 165.77 64.57 REMARK 500 SER A 311 32.33 -91.94 REMARK 500 CYS A 332 -43.93 80.64 REMARK 500 REMARK 500 REMARK: NULL DBREF 6Y6P A 1 352 UNP Q89839 Q89839_9VIRU 12 363 SEQADV 6Y6P PRO A 278 UNP Q89839 ALA 289 CONFLICT SEQADV 6Y6P SER A 293 UNP Q89839 ARG 304 CONFLICT SEQADV 6Y6P PHE A 353 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P GLU A 354 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P ASP A 355 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P ASP A 356 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P ASP A 357 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P ASP A 358 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P LYS A 359 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P ALA A 360 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P GLY A 361 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P TRP A 362 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P SER A 363 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P HIS A 364 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P PRO A 365 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P GLN A 366 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P PHE A 367 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P GLU A 368 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P LYS A 369 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P GLY A 370 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P GLY A 371 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P GLY A 372 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P SER A 373 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P GLY A 374 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P GLY A 375 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P GLY A 376 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P SER A 377 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P GLY A 378 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P GLY A 379 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P GLY A 380 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P SER A 381 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P TRP A 382 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P SER A 383 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P HIS A 384 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P PRO A 385 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P GLN A 386 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P PHE A 387 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P GLU A 388 UNP Q89839 EXPRESSION TAG SEQADV 6Y6P LYS A 389 UNP Q89839 EXPRESSION TAG SEQRES 1 A 389 ARG ASN VAL TYR ASP MET LYS ILE GLU CYS PRO HIS THR SEQRES 2 A 389 VAL SER PHE GLY GLU ASN SER VAL ILE GLY TYR VAL GLU SEQRES 3 A 389 LEU PRO PRO VAL PRO LEU ALA ASP THR ALA GLN MET VAL SEQRES 4 A 389 PRO GLU SER SER CYS ASN MET ASP ASN HIS GLN SER LEU SEQRES 5 A 389 ASN THR ILE THR LYS TYR THR GLN VAL SER TRP ARG GLY SEQRES 6 A 389 LYS ALA ASP GLN SER GLN SER SER GLN ASN SER PHE GLU SEQRES 7 A 389 THR VAL SER THR GLU VAL ASP LEU LYS GLY THR CYS VAL SEQRES 8 A 389 LEU LYS HIS LYS MET VAL GLU GLU SER TYR ARG SER ARG SEQRES 9 A 389 LYS SER VAL THR CYS TYR ASP LEU SER CYS ASN SER THR SEQRES 10 A 389 TYR CYS LYS PRO THR LEU TYR MET ILE VAL PRO ILE HIS SEQRES 11 A 389 ALA CYS ASN MET MET LYS SER CYS LEU ILE ALA LEU GLY SEQRES 12 A 389 PRO TYR ARG VAL GLN VAL VAL TYR GLU ARG SER TYR CYS SEQRES 13 A 389 MET THR GLY VAL LEU ILE GLU GLY LYS CYS PHE VAL PRO SEQRES 14 A 389 ASP GLN SER VAL VAL SER ILE ILE LYS HIS GLY ILE PHE SEQRES 15 A 389 ASP ILE ALA SER VAL HIS ILE VAL CYS PHE PHE VAL ALA SEQRES 16 A 389 VAL LYS GLY ASN THR TYR LYS ILE PHE GLU GLN VAL LYS SEQRES 17 A 389 LYS SER PHE GLU SER THR CYS ASN ASP THR GLU ASN LYS SEQRES 18 A 389 VAL GLN GLY TYR TYR ILE CYS ILE VAL GLY GLY ASN SER SEQRES 19 A 389 ALA PRO ILE TYR VAL PRO THR LEU ASP ASP PHE ARG SER SEQRES 20 A 389 MET GLU ALA PHE THR GLY ILE PHE ARG SER PRO HIS GLY SEQRES 21 A 389 GLU ASP HIS ASP LEU ALA GLY GLU GLU ILE ALA SER TYR SEQRES 22 A 389 SER ILE VAL GLY PRO ALA ASN ALA LYS VAL PRO HIS SER SEQRES 23 A 389 ALA SER SER ASP THR LEU SER LEU ILE ALA TYR SER GLY SEQRES 24 A 389 ILE PRO SER TYR SER SER LEU SER ILE LEU THR SER SER SEQRES 25 A 389 THR GLU ALA LYS HIS VAL PHE SER PRO GLY LEU PHE PRO SEQRES 26 A 389 LYS LEU ASN HIS THR ASN CYS ASP LYS SER ALA ILE PRO SEQRES 27 A 389 LEU ILE TRP THR GLY MET ILE ASP LEU PRO GLY TYR TYR SEQRES 28 A 389 GLU PHE GLU ASP ASP ASP ASP LYS ALA GLY TRP SER HIS SEQRES 29 A 389 PRO GLN PHE GLU LYS GLY GLY GLY SER GLY GLY GLY SER SEQRES 30 A 389 GLY GLY GLY SER TRP SER HIS PRO GLN PHE GLU LYS HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 4 HOH *202(H2 O) HELIX 1 AA1 ALA A 33 MET A 38 5 6 HELIX 2 AA2 GLN A 50 ASN A 53 5 4 HELIX 3 AA3 LYS A 95 ARG A 104 1 10 HELIX 4 AA4 HIS A 130 MET A 134 5 5 HELIX 5 AA5 LYS A 202 GLU A 212 1 11 HELIX 6 AA6 ASP A 217 LYS A 221 5 5 HELIX 7 AA7 ASP A 244 SER A 257 1 14 SHEET 1 AA1 4 VAL A 3 CYS A 10 0 SHEET 2 AA1 4 TYR A 145 ARG A 153 1 O VAL A 150 N ILE A 8 SHEET 3 AA1 4 SER A 137 LEU A 142 -1 N ILE A 140 O VAL A 147 SHEET 4 AA1 4 GLU A 41 SER A 42 -1 N GLU A 41 O ALA A 141 SHEET 1 AA2 3 VAL A 30 PRO A 31 0 SHEET 2 AA2 3 TYR A 118 PRO A 128 -1 O CYS A 119 N VAL A 30 SHEET 3 AA2 3 VAL A 107 CYS A 114 -1 N SER A 113 O LYS A 120 SHEET 1 AA3 4 VAL A 30 PRO A 31 0 SHEET 2 AA3 4 TYR A 118 PRO A 128 -1 O CYS A 119 N VAL A 30 SHEET 3 AA3 4 SER A 20 GLU A 26 -1 N VAL A 21 O VAL A 127 SHEET 4 AA3 4 ASN A 233 SER A 234 -1 O SER A 234 N SER A 20 SHEET 1 AA4 5 VAL A 80 LYS A 87 0 SHEET 2 AA4 5 ILE A 55 SER A 62 -1 N TYR A 58 O VAL A 84 SHEET 3 AA4 5 HIS A 317 PHE A 319 1 O PHE A 319 N VAL A 61 SHEET 4 AA4 5 LEU A 306 LEU A 309 -1 N SER A 307 O VAL A 318 SHEET 5 AA4 5 ALA A 336 PRO A 338 -1 O ILE A 337 N ILE A 308 SHEET 1 AA5 6 VAL A 160 ILE A 162 0 SHEET 2 AA5 6 LYS A 165 PRO A 169 -1 O LYS A 165 N ILE A 162 SHEET 3 AA5 6 ILE A 340 TYR A 351 -1 O TYR A 350 N VAL A 168 SHEET 4 AA5 6 ASP A 183 ALA A 195 -1 N VAL A 187 O ILE A 345 SHEET 5 AA5 6 GLY A 224 VAL A 230 -1 O TYR A 225 N VAL A 194 SHEET 6 AA5 6 ILE A 237 VAL A 239 -1 O VAL A 239 N TYR A 226 SHEET 1 AA6 3 TYR A 273 ALA A 281 0 SHEET 2 AA6 3 LEU A 292 GLY A 299 -1 O ALA A 296 N VAL A 276 SHEET 3 AA6 3 LEU A 323 PRO A 325 -1 O PHE A 324 N ILE A 295 SSBOND 1 CYS A 10 CYS A 132 1555 1555 2.14 SSBOND 2 CYS A 44 CYS A 138 1555 1555 2.08 SSBOND 3 CYS A 90 CYS A 109 1555 1555 2.12 SSBOND 4 CYS A 114 CYS A 119 1555 1555 2.15 SSBOND 5 CYS A 156 CYS A 166 1555 1555 2.15 SSBOND 6 CYS A 191 CYS A 228 1555 1555 2.09 SSBOND 7 CYS A 215 CYS A 332 1555 1555 2.06 LINK ND2 ASN A 115 C1 NAG B 1 1555 1555 1.43 LINK ND2 ASN A 328 C1 NAG C 1 1555 1555 1.43 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.41 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 CISPEP 1 VAL A 239 PRO A 240 0 0.83 CISPEP 2 VAL A 283 PRO A 284 0 -7.30 CRYST1 53.596 92.224 94.033 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018658 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010843 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010635 0.00000