HEADER HYDROLASE 27-FEB-20 6Y6S
TITLE MOUSE GALACTOCEREBROSIDASE COMPLEXED WITH GALACTO-NOEUROSTEGINE GNS AT
TITLE 2 PH 6.8
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: GALACTOCEREBROSIDASE;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: GALCERASE,GALACTOCEREBROSIDE BETA-GALACTOSIDASE,
COMPND 5 GALACTOSYLCERAMIDASE,GALACTOSYLCERAMIDE BETA-GALACTOSIDASE;
COMPND 6 EC: 3.2.1.46;
COMPND 7 ENGINEERED: YES;
COMPND 8 OTHER_DETAILS: GLYCOSYLATED PROTEIN
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 GENE: GALC;
SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS;
SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN;
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606
KEYWDS INHIBITOR, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR J.E.DEANE,J.MCLOUGHLIN
REVDAT 4 16-OCT-24 6Y6S 1 REMARK
REVDAT 3 24-JAN-24 6Y6S 1 REMARK
REVDAT 2 03-FEB-21 6Y6S 1 JRNL
REVDAT 1 13-JAN-21 6Y6S 0
JRNL AUTH A.VIUFF,S.SALAMONE,J.MCLOUGHLIN,J.E.DEANE,H.H.JENSEN
JRNL TITL THE BICYCLIC FORM OF GALACTO -NOEUROSTEGINE IS A POTENT
JRNL TITL 2 INHIBITOR OF BETA-GALACTOCEREBROSIDASE.
JRNL REF ACS MED.CHEM.LETT. V. 12 56 2021
JRNL REFN ISSN 1948-5875
JRNL PMID 33488964
JRNL DOI 10.1021/ACSMEDCHEMLETT.0C00377
REMARK 2
REMARK 2 RESOLUTION. 2.10 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.16_3549
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.07
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 3 NUMBER OF REFLECTIONS : 53021
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.165
REMARK 3 R VALUE (WORKING SET) : 0.163
REMARK 3 FREE R VALUE : 0.201
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070
REMARK 3 FREE R VALUE TEST SET COUNT : 2687
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 56.0700 - 5.6000 1.00 2737 144 0.1561 0.1796
REMARK 3 2 5.6000 - 4.4500 1.00 2695 134 0.1195 0.1442
REMARK 3 3 4.4500 - 3.8800 1.00 2668 142 0.1231 0.1339
REMARK 3 4 3.8800 - 3.5300 1.00 2654 145 0.1440 0.1788
REMARK 3 5 3.5300 - 3.2800 1.00 2669 133 0.1678 0.2128
REMARK 3 6 3.2800 - 3.0800 1.00 2644 148 0.1865 0.2227
REMARK 3 7 3.0800 - 2.9300 1.00 2664 124 0.1792 0.2292
REMARK 3 8 2.9300 - 2.8000 1.00 2648 134 0.1789 0.2274
REMARK 3 9 2.8000 - 2.6900 1.00 2641 151 0.1740 0.2438
REMARK 3 10 2.6900 - 2.6000 1.00 2624 159 0.1745 0.2412
REMARK 3 11 2.6000 - 2.5200 1.00 2646 132 0.1843 0.2290
REMARK 3 12 2.5200 - 2.4500 1.00 2632 150 0.1797 0.2528
REMARK 3 13 2.4500 - 2.3800 1.00 2593 169 0.1929 0.2364
REMARK 3 14 2.3800 - 2.3200 1.00 2629 147 0.2076 0.2523
REMARK 3 15 2.3200 - 2.2700 1.00 2637 140 0.2196 0.2716
REMARK 3 16 2.2700 - 2.2200 1.00 2634 155 0.2280 0.2889
REMARK 3 17 2.2200 - 2.1800 1.00 2632 136 0.2333 0.2660
REMARK 3 18 2.1800 - 2.1400 1.00 2659 119 0.2565 0.2828
REMARK 3 19 2.1400 - 2.1000 0.99 2628 125 0.2855 0.3524
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.255
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.206
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 40.97
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.75
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.007 5403
REMARK 3 ANGLE : 0.842 7377
REMARK 3 CHIRALITY : 0.051 796
REMARK 3 PLANARITY : 0.005 929
REMARK 3 DIHEDRAL : 10.492 3042
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 4
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN A AND (RESSEQ 25:40 OR RESSEQ 338:452)
REMARK 3 ORIGIN FOR THE GROUP (A): 89.8926 109.6725 1.4888
REMARK 3 T TENSOR
REMARK 3 T11: 0.7909 T22: 0.9475
REMARK 3 T33: 0.5788 T12: -0.4350
REMARK 3 T13: 0.1590 T23: 0.1489
REMARK 3 L TENSOR
REMARK 3 L11: 1.9602 L22: 1.6560
REMARK 3 L33: 0.1388 L12: 0.7245
REMARK 3 L13: -0.4118 L23: 0.0139
REMARK 3 S TENSOR
REMARK 3 S11: 0.1101 S12: 0.4724 S13: 0.3989
REMARK 3 S21: -0.5122 S22: -0.0498 S23: -0.5292
REMARK 3 S31: -0.4199 S32: 0.6914 S33: 0.0075
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN A AND RESSEQ 41:337
REMARK 3 ORIGIN FOR THE GROUP (A): 74.4837 99.0214 22.2927
REMARK 3 T TENSOR
REMARK 3 T11: 0.2896 T22: 0.4028
REMARK 3 T33: 0.3427 T12: -0.1772
REMARK 3 T13: -0.0045 T23: 0.0061
REMARK 3 L TENSOR
REMARK 3 L11: 0.7619 L22: 0.9418
REMARK 3 L33: 1.6052 L12: -0.2450
REMARK 3 L13: 0.0271 L23: 0.0700
REMARK 3 S TENSOR
REMARK 3 S11: 0.0289 S12: 0.0582 S13: 0.1235
REMARK 3 S21: -0.0506 S22: 0.0077 S23: -0.1667
REMARK 3 S31: -0.2997 S32: 0.4562 S33: -0.0260
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN A AND RESSEQ 453:471
REMARK 3 ORIGIN FOR THE GROUP (A): 98.0288 104.6609 27.0837
REMARK 3 T TENSOR
REMARK 3 T11: 0.3521 T22: 0.9073
REMARK 3 T33: 0.6792 T12: -0.4429
REMARK 3 T13: -0.0328 T23: 0.0157
REMARK 3 L TENSOR
REMARK 3 L11: 0.1154 L22: 0.0982
REMARK 3 L33: 0.0178 L12: 0.0940
REMARK 3 L13: 0.0202 L23: 0.0302
REMARK 3 S TENSOR
REMARK 3 S11: -0.0475 S12: 0.0383 S13: 0.1982
REMARK 3 S21: -0.0910 S22: 0.0580 S23: -0.3483
REMARK 3 S31: -0.1961 S32: 0.3109 S33: 0.1501
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN A AND RESSEQ 472:668
REMARK 3 ORIGIN FOR THE GROUP (A): 82.5993 77.4257 43.3788
REMARK 3 T TENSOR
REMARK 3 T11: 0.3022 T22: 0.5133
REMARK 3 T33: 0.3343 T12: -0.0295
REMARK 3 T13: -0.1004 T23: -0.0177
REMARK 3 L TENSOR
REMARK 3 L11: 1.3556 L22: 2.1627
REMARK 3 L33: 1.8266 L12: -0.1870
REMARK 3 L13: 0.4663 L23: -0.5969
REMARK 3 S TENSOR
REMARK 3 S11: 0.0708 S12: -0.1194 S13: -0.0606
REMARK 3 S21: 0.2497 S22: 0.0174 S23: -0.2161
REMARK 3 S31: 0.1756 S32: 0.4941 S33: -0.0942
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6Y6S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-FEB-20.
REMARK 100 THE DEPOSITION ID IS D_1292107004.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 21-NOV-15
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I04
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.979
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS
REMARK 200 DATA SCALING SOFTWARE : DIALS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53072
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100
REMARK 200 RESOLUTION RANGE LOW (A) : 124.360
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 10.00
REMARK 200 R MERGE (I) : 0.15300
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.2000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHENIX
REMARK 200 STARTING MODEL: 3ZR5
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 60.13
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM ACETATE, 0.1 M SODIUM
REMARK 280 CACODYLATE (PH 6.8), AND 34% WT/VOL POLYETHYLENE GLYCOL 8000,
REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z
REMARK 290 3555 -X+Y,-X,Z
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z
REMARK 290 6555 -X,-X+Y,-Z
REMARK 290 7555 X+2/3,Y+1/3,Z+1/3
REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3
REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3
REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3
REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3
REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3
REMARK 290 13555 X+1/3,Y+2/3,Z+2/3
REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3
REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3
REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3
REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3
REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 124.36050
REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 71.79957
REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 25.77533
REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 124.36050
REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 71.79957
REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 25.77533
REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 124.36050
REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 71.79957
REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 25.77533
REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 124.36050
REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 71.79957
REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 25.77533
REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 124.36050
REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 71.79957
REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 25.77533
REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 124.36050
REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 71.79957
REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 25.77533
REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 143.59914
REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 51.55067
REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 143.59914
REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 51.55067
REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 143.59914
REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 51.55067
REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 143.59914
REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 51.55067
REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 143.59914
REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 51.55067
REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 143.59914
REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 51.55067
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 HIS A 15
REMARK 465 HIS A 16
REMARK 465 HIS A 17
REMARK 465 HIS A 18
REMARK 465 HIS A 19
REMARK 465 HIS A 20
REMARK 465 ILE A 21
REMARK 465 GLU A 22
REMARK 465 GLY A 23
REMARK 465 ARG A 24
REMARK 465 THR A 416
REMARK 465 PRO A 417
REMARK 465 GLN A 418
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 350 CG CD CE NZ
REMARK 470 LYS A 398 CG CD CE NZ
REMARK 470 ARG A 402 CG CD NE CZ NH1 NH2
REMARK 470 ARG A 420 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 424 CG CD CE NZ
REMARK 470 GLU A 443 CG CD OE1 OE2
REMARK 470 LYS A 475 CG CD CE NZ
REMARK 470 GLU A 505 CG CD OE1 OE2
REMARK 470 ARG A 507 CG CD NE CZ NH1 NH2
REMARK 470 ARG A 555 CG CD NE CZ NH1 NH2
REMARK 470 ARG A 663 CG CD NE CZ NH1 NH2
REMARK 470 GLU A 665 CG CD OE1 OE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O4 NAG B 1 O5 NAG B 2 2.14
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 PHE A 75 -71.45 -145.95
REMARK 500 ASP A 89 -4.19 79.14
REMARK 500 THR A 93 -42.78 156.45
REMARK 500 ILE A 179 -87.21 -107.69
REMARK 500 LEU A 202 42.60 -106.87
REMARK 500 ASN A 212 -121.31 -145.39
REMARK 500 THR A 241 -2.04 75.99
REMARK 500 THR A 243 -161.91 -117.13
REMARK 500 PHE A 260 -103.68 75.63
REMARK 500 ASN A 264 34.82 -82.93
REMARK 500 SER A 265 -169.18 -71.88
REMARK 500 SER A 296 53.28 -110.57
REMARK 500 SER A 306 41.76 -108.23
REMARK 500 SER A 376 20.66 -150.06
REMARK 500 GLU A 443 -153.22 -106.01
REMARK 500 PRO A 465 154.39 -49.34
REMARK 500 ASN A 490 -13.53 75.82
REMARK 500 GLU A 505 37.93 -78.51
REMARK 500 ARG A 555 -52.81 70.10
REMARK 500 THR A 653 -161.11 -123.11
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A 709 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 477 O
REMARK 620 2 ASN A 479 OD1 77.2
REMARK 620 3 PHE A 511 O 94.9 93.6
REMARK 620 4 ASP A 660 OD1 85.4 161.4 94.3
REMARK 620 5 ASP A 660 OD2 130.6 151.8 88.5 45.3
REMARK 620 6 HOH A 929 O 101.1 83.6 162.7 93.6 86.1
REMARK 620 7 HOH A 934 O 168.3 91.9 90.0 104.9 60.0 73.0
REMARK 620 N 1 2 3 4 5 6
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 NI A 710 NI
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 538 NE2
REMARK 620 2 HIS A 644 NE2 92.8
REMARK 620 N 1
DBREF 6Y6S A 25 668 UNP P54818 GALC_MOUSE 41 684
SEQADV 6Y6S HIS A 15 UNP P54818 EXPRESSION TAG
SEQADV 6Y6S HIS A 16 UNP P54818 EXPRESSION TAG
SEQADV 6Y6S HIS A 17 UNP P54818 EXPRESSION TAG
SEQADV 6Y6S HIS A 18 UNP P54818 EXPRESSION TAG
SEQADV 6Y6S HIS A 19 UNP P54818 EXPRESSION TAG
SEQADV 6Y6S HIS A 20 UNP P54818 EXPRESSION TAG
SEQADV 6Y6S ILE A 21 UNP P54818 EXPRESSION TAG
SEQADV 6Y6S GLU A 22 UNP P54818 EXPRESSION TAG
SEQADV 6Y6S GLY A 23 UNP P54818 EXPRESSION TAG
SEQADV 6Y6S ARG A 24 UNP P54818 EXPRESSION TAG
SEQRES 1 A 654 HIS HIS HIS HIS HIS HIS ILE GLU GLY ARG GLY ALA TYR
SEQRES 2 A 654 VAL LEU ASP ASP SER ASP GLY LEU GLY ARG GLU PHE ASP
SEQRES 3 A 654 GLY ILE GLY ALA VAL SER GLY GLY GLY ALA THR SER ARG
SEQRES 4 A 654 LEU LEU VAL ASN TYR PRO GLU PRO TYR ARG SER GLU ILE
SEQRES 5 A 654 LEU ASP TYR LEU PHE LYS PRO ASN PHE GLY ALA SER LEU
SEQRES 6 A 654 HIS ILE LEU LYS VAL GLU ILE GLY GLY ASP GLY GLN THR
SEQRES 7 A 654 THR ASP GLY THR GLU PRO SER HIS MET HIS TYR GLU LEU
SEQRES 8 A 654 ASP GLU ASN TYR PHE ARG GLY TYR GLU TRP TRP LEU MET
SEQRES 9 A 654 LYS GLU ALA LYS LYS ARG ASN PRO ASP ILE ILE LEU MET
SEQRES 10 A 654 GLY LEU PRO TRP SER PHE PRO GLY TRP LEU GLY LYS GLY
SEQRES 11 A 654 PHE SER TRP PRO TYR VAL ASN LEU GLN LEU THR ALA TYR
SEQRES 12 A 654 TYR VAL VAL ARG TRP ILE LEU GLY ALA LYS HIS TYR HIS
SEQRES 13 A 654 ASP LEU ASP ILE ASP TYR ILE GLY ILE TRP ASN GLU ARG
SEQRES 14 A 654 PRO PHE ASP ALA ASN TYR ILE LYS GLU LEU ARG LYS MET
SEQRES 15 A 654 LEU ASP TYR GLN GLY LEU GLN ARG VAL ARG ILE ILE ALA
SEQRES 16 A 654 SER ASP ASN LEU TRP GLU PRO ILE SER SER SER LEU LEU
SEQRES 17 A 654 LEU ASP GLN GLU LEU TRP LYS VAL VAL ASP VAL ILE GLY
SEQRES 18 A 654 ALA HIS TYR PRO GLY THR TYR THR VAL TRP ASN ALA LYS
SEQRES 19 A 654 MET SER GLY LYS LYS LEU TRP SER SER GLU ASP PHE SER
SEQRES 20 A 654 THR ILE ASN SER ASN VAL GLY ALA GLY CYS TRP SER ARG
SEQRES 21 A 654 ILE LEU ASN GLN ASN TYR ILE ASN GLY ASN MET THR SER
SEQRES 22 A 654 THR ILE ALA TRP ASN LEU VAL ALA SER TYR TYR GLU GLU
SEQRES 23 A 654 LEU PRO TYR GLY ARG SER GLY LEU MET THR ALA GLN GLU
SEQRES 24 A 654 PRO TRP SER GLY HIS TYR VAL VAL ALA SER PRO ILE TRP
SEQRES 25 A 654 VAL SER ALA HIS THR THR GLN PHE THR GLN PRO GLY TRP
SEQRES 26 A 654 TYR TYR LEU LYS THR VAL GLY HIS LEU GLU LYS GLY GLY
SEQRES 27 A 654 SER TYR VAL ALA LEU THR ASP GLY LEU GLY ASN LEU THR
SEQRES 28 A 654 ILE ILE ILE GLU THR MET SER HIS GLN HIS SER MET CYS
SEQRES 29 A 654 ILE ARG PRO TYR LEU PRO TYR TYR ASN VAL SER HIS GLN
SEQRES 30 A 654 LEU ALA THR PHE THR LEU LYS GLY SER LEU ARG GLU ILE
SEQRES 31 A 654 GLN GLU LEU GLN VAL TRP TYR THR LYS LEU GLY THR PRO
SEQRES 32 A 654 GLN GLN ARG LEU HIS PHE LYS GLN LEU ASP THR LEU TRP
SEQRES 33 A 654 LEU LEU ASP GLY SER GLY SER PHE THR LEU GLU LEU GLU
SEQRES 34 A 654 GLU ASP GLU ILE PHE THR LEU THR THR LEU THR THR GLY
SEQRES 35 A 654 ARG LYS GLY SER TYR PRO PRO PRO PRO SER SER LYS PRO
SEQRES 36 A 654 PHE PRO THR ASN TYR LYS ASP ASP PHE ASN VAL GLU TYR
SEQRES 37 A 654 PRO LEU PHE SER GLU ALA PRO ASN PHE ALA ASP GLN THR
SEQRES 38 A 654 GLY VAL PHE GLU TYR TYR MET ASN ASN GLU ASP ARG GLU
SEQRES 39 A 654 HIS ARG PHE THR LEU ARG GLN VAL LEU ASN GLN ARG PRO
SEQRES 40 A 654 ILE THR TRP ALA ALA ASP ALA SER SER THR ILE SER VAL
SEQRES 41 A 654 ILE GLY ASP HIS HIS TRP THR ASN MET THR VAL GLN CYS
SEQRES 42 A 654 ASP VAL TYR ILE GLU THR PRO ARG SER GLY GLY VAL PHE
SEQRES 43 A 654 ILE ALA GLY ARG VAL ASN LYS GLY GLY ILE LEU ILE ARG
SEQRES 44 A 654 SER ALA THR GLY VAL PHE PHE TRP ILE PHE ALA ASN GLY
SEQRES 45 A 654 SER TYR ARG VAL THR ALA ASP LEU GLY GLY TRP ILE THR
SEQRES 46 A 654 TYR ALA SER GLY HIS ALA ASP VAL THR ALA LYS ARG TRP
SEQRES 47 A 654 TYR THR LEU THR LEU GLY ILE LYS GLY TYR PHE ALA PHE
SEQRES 48 A 654 GLY MET LEU ASN GLY THR ILE LEU TRP LYS ASN VAL ARG
SEQRES 49 A 654 VAL LYS TYR PRO GLY HIS GLY TRP ALA ALA ILE GLY THR
SEQRES 50 A 654 HIS THR PHE GLU PHE ALA GLN PHE ASP ASN PHE ARG VAL
SEQRES 51 A 654 GLU ALA ALA ARG
HET NAG B 1 14
HET NAG B 2 14
HET NAG C 1 14
HET NAG C 2 14
HET NAG D 1 14
HET NAG D 2 14
HET ODW A 701 13
HET NAG A 708 14
HET CA A 709 1
HET NI A 710 1
HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
HETNAM ODW (1~{R},2~{S},3~{S},4~{R},5~{R})-4-(HYDROXYMETHYL)-8-
HETNAM 2 ODW AZABICYCLO[3.2.1]OCTANE-1,2,3-TRIOL
HETNAM CA CALCIUM ION
HETNAM NI NICKEL (II) ION
HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA-
HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO-
HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE
HETSYN ODW GALACTO-NOEUROSTEGINE; GNS
FORMUL 2 NAG 7(C8 H15 N O6)
FORMUL 5 ODW C8 H15 N O4
FORMUL 7 CA CA 2+
FORMUL 8 NI NI 2+
FORMUL 9 HOH *267(H2 O)
HELIX 1 AA1 PRO A 61 LYS A 72 1 12
HELIX 2 AA2 TYR A 113 ASN A 125 1 13
HELIX 3 AA3 PRO A 138 LYS A 143 5 6
HELIX 4 AA4 ASN A 151 ASP A 171 1 21
HELIX 5 AA5 ASP A 186 GLN A 200 1 15
HELIX 6 AA6 PRO A 216 ASP A 224 1 9
HELIX 7 AA7 ASP A 224 VAL A 231 1 8
HELIX 8 AA8 VAL A 244 GLY A 251 1 8
HELIX 9 AA9 SER A 265 ASN A 284 1 20
HELIX 10 AB1 ALA A 322 GLN A 333 1 12
HELIX 11 AB2 SER A 372 SER A 376 5 5
HELIX 12 AB3 GLY A 399 ILE A 404 5 6
HELIX 13 AB4 GLY A 568 SER A 574 5 7
SHEET 1 AA1 3 ALA A 26 LEU A 29 0
SHEET 2 AA1 3 GLN A 391 LEU A 397 1 O THR A 396 N LEU A 29
SHEET 3 AA1 3 SER A 437 LEU A 442 -1 O PHE A 438 N PHE A 395
SHEET 1 AA2 4 LEU A 35 GLU A 38 0
SHEET 2 AA2 4 TYR A 340 LEU A 342 -1 O TYR A 341 N GLY A 36
SHEET 3 AA2 4 SER A 353 THR A 358 -1 O ALA A 356 N LEU A 342
SHEET 4 AA2 4 GLY A 346 HIS A 347 -1 N GLY A 346 O TYR A 354
SHEET 1 AA3 7 LEU A 35 GLU A 38 0
SHEET 2 AA3 7 TYR A 340 LEU A 342 -1 O TYR A 341 N GLY A 36
SHEET 3 AA3 7 SER A 353 THR A 358 -1 O ALA A 356 N LEU A 342
SHEET 4 AA3 7 LEU A 364 GLU A 369 -1 O THR A 365 N LEU A 357
SHEET 5 AA3 7 GLU A 446 THR A 451 -1 O LEU A 450 N ILE A 366
SHEET 6 AA3 7 GLU A 406 LYS A 413 -1 N GLN A 408 O THR A 451
SHEET 7 AA3 7 LEU A 421 TRP A 430 -1 O LYS A 424 N TYR A 411
SHEET 1 AA4 9 GLY A 41 SER A 46 0
SHEET 2 AA4 9 ILE A 81 ILE A 86 1 O LYS A 83 N SER A 46
SHEET 3 AA4 9 ILE A 129 PRO A 134 1 O ILE A 129 N LEU A 82
SHEET 4 AA4 9 TYR A 176 ILE A 177 1 O TYR A 176 N GLY A 132
SHEET 5 AA4 9 ARG A 206 ASN A 212 1 O ARG A 206 N ILE A 177
SHEET 6 AA4 9 VAL A 233 HIS A 237 1 O HIS A 237 N ASN A 212
SHEET 7 AA4 9 LYS A 253 PHE A 260 1 O LYS A 253 N ILE A 234
SHEET 8 AA4 9 MET A 285 TRP A 291 1 O SER A 287 N SER A 256
SHEET 9 AA4 9 GLY A 41 SER A 46 1 N VAL A 45 O ALA A 290
SHEET 1 AA5 4 ASN A 473 ASP A 476 0
SHEET 2 AA5 4 ALA A 657 ALA A 667 -1 O VAL A 664 N TYR A 474
SHEET 3 AA5 4 PHE A 511 GLN A 515 -1 N LEU A 513 O PHE A 659
SHEET 4 AA5 4 PHE A 498 MET A 502 -1 N GLU A 499 O ARG A 514
SHEET 1 AA6 6 ASN A 473 ASP A 476 0
SHEET 2 AA6 6 ALA A 657 ALA A 667 -1 O VAL A 664 N TYR A 474
SHEET 3 AA6 6 ASN A 542 ILE A 551 -1 N ASN A 542 O ALA A 667
SHEET 4 AA6 6 TRP A 612 LYS A 620 -1 O LEU A 615 N CYS A 547
SHEET 5 AA6 6 PHE A 623 LEU A 628 -1 O PHE A 625 N GLY A 618
SHEET 6 AA6 6 THR A 631 ARG A 638 -1 O TRP A 634 N GLY A 626
SHEET 1 AA7 7 ALA A 492 THR A 495 0
SHEET 2 AA7 7 THR A 531 ILE A 535 -1 O ILE A 532 N GLN A 494
SHEET 3 AA7 7 TRP A 646 THR A 651 -1 O ALA A 647 N ILE A 535
SHEET 4 AA7 7 GLY A 558 VAL A 565 -1 N VAL A 565 O TRP A 646
SHEET 5 AA7 7 THR A 576 PHE A 583 -1 O PHE A 580 N ILE A 561
SHEET 6 AA7 7 SER A 587 ASP A 593 -1 O ARG A 589 N TRP A 581
SHEET 7 AA7 7 THR A 599 HIS A 604 -1 O TYR A 600 N VAL A 590
SSBOND 1 CYS A 271 CYS A 378 1555 1555 2.05
LINK ND2 ASN A 284 C1 NAG B 1 1555 1555 1.43
LINK ND2 ASN A 363 C1 NAG D 1 1555 1555 1.43
LINK ND2 ASN A 387 C1 NAG A 708 1555 1555 1.45
LINK ND2 ASN A 542 C1 NAG C 1 1555 1555 1.44
LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.37
LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.38
LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.38
LINK O ASP A 477 CA CA A 709 1555 1555 2.35
LINK OD1 ASN A 479 CA CA A 709 1555 1555 2.49
LINK O PHE A 511 CA CA A 709 1555 1555 2.47
LINK NE2 HIS A 538 NI NI A 710 1555 1555 2.30
LINK NE2 HIS A 644 NI NI A 710 1555 1555 2.34
LINK OD1 ASP A 660 CA CA A 709 1555 1555 2.36
LINK OD2 ASP A 660 CA CA A 709 1555 1555 3.06
LINK CA CA A 709 O HOH A 929 1555 1555 2.76
LINK CA CA A 709 O HOH A 934 1555 1555 2.36
CISPEP 1 GLY A 48 GLY A 49 0 5.84
CISPEP 2 GLU A 60 PRO A 61 0 1.59
CISPEP 3 ALA A 209 SER A 210 0 -2.90
CISPEP 4 GLU A 215 PRO A 216 0 7.19
CISPEP 5 TRP A 291 ASN A 292 0 0.18
CISPEP 6 ARG A 380 PRO A 381 0 -7.18
CISPEP 7 TYR A 641 PRO A 642 0 -0.18
CRYST1 248.721 248.721 77.326 90.00 90.00 120.00 H 3 2 18
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.004021 0.002321 0.000000 0.00000
SCALE2 0.000000 0.004643 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012932 0.00000