HEADER OXIDOREDUCTASE 06-MAR-20 6Y9C TITLE THE STRUCTURE OF A QUATERNARY AMMONIUM RIESKE MONOOXYGENASE REVEALS TITLE 2 INSIGHTS INTO CARNITINE OXIDATION BY GUT MICROBIOTA AND INTER-SUBUNIT TITLE 3 ELECTRON TRANSFER COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARNITINE MONOOXYGENASE OXYGENASE SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CARNITINE MONOOXYGENASE ALPHA SUBUNIT; COMPND 5 EC: 1.14.13.239; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 470; SOURCE 4 GENE: ANTA_2, ANTA_1, ANTA_3, A7M79_02670, A7M90_13970, ABUW_3074, SOURCE 5 B4R90_07590, B9X95_06095, BGC29_09330, C2U32_18540, C3415_14505, SOURCE 6 CBI29_00874, CHQ89_11265, CPI82_11190, CSB70_0522, DLI75_01970, SOURCE 7 DOL94_04925, DVA79_16365, E2533_13315, E2536_16135, E5294_15630, SOURCE 8 E5979_13670, EA685_07170, EA686_01565, EA706_03020, EA722_03860, SOURCE 9 EA746_003300, EWO92_12480, EWO96_16565, EWP49_15025, FD887_09300, SOURCE 10 FD913_14110, FJU36_15000, FJU42_16200, FJU76_14830, FJU79_08840, SOURCE 11 FJU87_10695, FJV14_20515, LV38_02893, NCTC13305_01609, SOURCE 12 SAMEA104305283_02985, SAMEA104305351_01970; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS APO, RIESKE, IRON-SULPHUR CLUSTER, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.QUARESHY,M.SHANMUGAM,T.D.BUGG,A.CAMERON,Y.CHEN REVDAT 3 31-JAN-24 6Y9C 1 REMARK REVDAT 2 18-JAN-23 6Y9C 1 JRNL REVDAT 1 31-MAR-21 6Y9C 0 JRNL AUTH M.QUARESHY,M.SHANMUGAM,A.D.CAMERON,T.D.H.BUGG,Y.CHEN JRNL TITL CHARACTERISATION OF AN UNUSUAL CYSTEINE PAIR IN THE RIESKE JRNL TITL 2 CARNITINE MONOOXYGENASE CNTA CATALYTIC SITE. JRNL REF FEBS J. 2023 JRNL REFN ISSN 1742-464X JRNL PMID 36617384 JRNL DOI 10.1111/FEBS.16722 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 36236 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 3344 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.2300 - 5.1881 0.98 2904 196 0.1869 0.2130 REMARK 3 2 5.1881 - 4.1195 0.99 2992 139 0.1556 0.1815 REMARK 3 3 4.1195 - 3.5992 0.98 2921 128 0.2301 0.3545 REMARK 3 4 3.5992 - 3.2703 1.00 2989 147 0.2229 0.2475 REMARK 3 5 3.2703 - 3.0360 1.00 3003 141 0.2352 0.2448 REMARK 3 6 3.0360 - 2.8571 1.00 2986 154 0.2377 0.2744 REMARK 3 7 2.8571 - 2.7141 1.00 2962 176 0.2560 0.3455 REMARK 3 8 2.7141 - 2.5959 1.00 2957 146 0.2489 0.2742 REMARK 3 9 2.5959 - 2.4960 1.00 3045 99 0.2455 0.3490 REMARK 3 10 2.4960 - 2.4099 1.00 3015 124 0.2344 0.3165 REMARK 3 11 2.4099 - 2.3346 1.00 2965 164 0.2263 0.2490 REMARK 3 12 2.3346 - 2.2678 1.00 2993 184 0.2295 0.2896 REMARK 3 13 2.2678 - 2.2082 0.42 1265 67 0.4016 0.5217 REMARK 3 14 2.2082 - 2.1543 1.00 2978 156 0.2694 0.3417 REMARK 3 15 2.1543 - 2.1053 0.99 2939 105 0.2626 0.3396 REMARK 3 16 2.1053 - 2.0605 0.98 2974 171 0.2925 0.3225 REMARK 3 17 2.0605 - 2.0193 0.98 2897 148 0.2987 0.3190 REMARK 3 18 2.0193 - 1.9812 0.97 2874 139 0.3017 0.3440 REMARK 3 19 1.9812 - 1.9458 0.96 2851 142 0.3128 0.3697 REMARK 3 20 1.9458 - 1.9128 0.74 2192 143 0.4125 0.5107 REMARK 3 21 1.9128 - 1.8820 0.47 1430 60 0.5307 0.5228 REMARK 3 22 1.8820 - 1.8530 0.95 2818 138 0.3911 0.3693 REMARK 3 23 1.8530 - 1.8258 0.95 2814 139 0.3735 0.4604 REMARK 3 24 1.8258 - 1.8001 0.94 2875 138 0.4050 0.5115 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.9398 -12.0085 -0.7249 REMARK 3 T TENSOR REMARK 3 T11: 0.1548 T22: 0.1843 REMARK 3 T33: 0.4772 T12: -0.0180 REMARK 3 T13: -0.0237 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 1.3121 L22: 1.5610 REMARK 3 L33: 0.5124 L12: -0.0320 REMARK 3 L13: 0.0318 L23: 0.0143 REMARK 3 S TENSOR REMARK 3 S11: -0.0377 S12: -0.1249 S13: 0.2181 REMARK 3 S21: 0.0162 S22: -0.0286 S23: -0.4416 REMARK 3 S31: -0.0663 S32: -0.0255 S33: 0.0420 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1619 -32.6210 -9.4665 REMARK 3 T TENSOR REMARK 3 T11: 0.3440 T22: 0.3140 REMARK 3 T33: 1.0496 T12: 0.0301 REMARK 3 T13: 0.0938 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.7661 L22: 1.7289 REMARK 3 L33: 1.6806 L12: 0.0346 REMARK 3 L13: 0.1714 L23: -1.6498 REMARK 3 S TENSOR REMARK 3 S11: -0.1396 S12: 0.2660 S13: -0.5309 REMARK 3 S21: -0.9523 S22: 0.1351 S23: -0.6880 REMARK 3 S31: 0.7602 S32: 0.2558 S33: 0.0596 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 277 THROUGH 371 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.3268 -31.2138 -6.2105 REMARK 3 T TENSOR REMARK 3 T11: 0.2009 T22: 0.1569 REMARK 3 T33: 0.4376 T12: -0.0112 REMARK 3 T13: 0.0013 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.1878 L22: 1.6513 REMARK 3 L33: 0.6255 L12: 0.0579 REMARK 3 L13: -0.0418 L23: -0.0158 REMARK 3 S TENSOR REMARK 3 S11: 0.0196 S12: -0.0689 S13: -0.3662 REMARK 3 S21: -0.2316 S22: 0.0035 S23: -0.7209 REMARK 3 S31: 0.0858 S32: -0.0292 S33: -0.0950 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Y9C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107150. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 - 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9119 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38296 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 38.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : 0.17390 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3VCP REMARK 200 REMARK 200 REMARK: RED HEXAGONAL CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MM HEPES, 20% PEG3350, 0.2M NASCN, REMARK 280 0.5MM TCEP, PH 7.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.68300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.68300 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.68300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -123.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -91.24200 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -45.62100 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -79.01789 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 250 REMARK 465 PRO A 251 REMARK 465 SER A 252 REMARK 465 VAL A 253 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 20 173.15 -56.88 REMARK 500 THR A 27 -31.37 -131.38 REMARK 500 ASN A 57 -9.48 79.94 REMARK 500 HIS A 88 -74.32 -86.88 REMARK 500 ALA A 120 -63.70 -100.75 REMARK 500 THR A 159 -92.22 -88.06 REMARK 500 ALA A 186 145.47 -175.38 REMARK 500 HIS A 230 -123.27 -135.66 REMARK 500 SER A 246 -91.52 -166.31 REMARK 500 CYS A 266 65.86 -158.20 REMARK 500 VAL A 271 79.40 -117.30 REMARK 500 PRO A 272 -175.49 -65.04 REMARK 500 VAL A 318 -60.73 -102.95 REMARK 500 SER A 352 172.28 -52.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 404 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 86 SG REMARK 620 2 FES A 404 S1 99.8 REMARK 620 3 FES A 404 S2 110.5 102.9 REMARK 620 4 CYS A 106 SG 135.9 111.3 92.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES A 404 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 88 ND1 REMARK 620 2 FES A 404 S1 115.8 REMARK 620 3 FES A 404 S2 114.1 103.8 REMARK 620 4 HIS A 109 ND1 85.3 116.3 121.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 208 NE2 REMARK 620 2 HIS A 213 NE2 104.6 REMARK 620 3 ASP A 323 OD1 94.7 72.8 REMARK 620 4 ASP A 323 OD2 142.1 87.8 54.4 REMARK 620 5 SCN A 403 N 115.8 82.4 144.9 101.1 REMARK 620 6 HOH A 517 O 100.5 149.5 88.2 61.7 102.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 152 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FES A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6Y8J RELATED DB: PDB REMARK 900 CARNITINE MONOOXYGENASE IN COMPLEX WITH GBB REMARK 900 RELATED ID: 6Y8S RELATED DB: PDB REMARK 900 APO STRUCTURE OF CARNITINE MONOOXYGENASE DBREF1 6Y9C A 1 371 UNP A0A059ZPP5_ACIBA DBREF2 6Y9C A A0A059ZPP5 1 371 SEQADV 6Y9C MET A -19 UNP A0A059ZPP INITIATING METHIONINE SEQADV 6Y9C GLY A -18 UNP A0A059ZPP EXPRESSION TAG SEQADV 6Y9C SER A -17 UNP A0A059ZPP EXPRESSION TAG SEQADV 6Y9C SER A -16 UNP A0A059ZPP EXPRESSION TAG SEQADV 6Y9C HIS A -15 UNP A0A059ZPP EXPRESSION TAG SEQADV 6Y9C HIS A -14 UNP A0A059ZPP EXPRESSION TAG SEQADV 6Y9C HIS A -13 UNP A0A059ZPP EXPRESSION TAG SEQADV 6Y9C HIS A -12 UNP A0A059ZPP EXPRESSION TAG SEQADV 6Y9C HIS A -11 UNP A0A059ZPP EXPRESSION TAG SEQADV 6Y9C HIS A -10 UNP A0A059ZPP EXPRESSION TAG SEQADV 6Y9C SER A -9 UNP A0A059ZPP EXPRESSION TAG SEQADV 6Y9C SER A -8 UNP A0A059ZPP EXPRESSION TAG SEQADV 6Y9C GLY A -7 UNP A0A059ZPP EXPRESSION TAG SEQADV 6Y9C LEU A -6 UNP A0A059ZPP EXPRESSION TAG SEQADV 6Y9C VAL A -5 UNP A0A059ZPP EXPRESSION TAG SEQADV 6Y9C PRO A -4 UNP A0A059ZPP EXPRESSION TAG SEQADV 6Y9C ARG A -3 UNP A0A059ZPP EXPRESSION TAG SEQADV 6Y9C GLY A -2 UNP A0A059ZPP EXPRESSION TAG SEQADV 6Y9C SER A -1 UNP A0A059ZPP EXPRESSION TAG SEQADV 6Y9C HIS A 0 UNP A0A059ZPP EXPRESSION TAG SEQADV 6Y9C ALA A 209 UNP A0A059ZPP CYS 209 ENGINEERED MUTATION SEQRES 1 A 391 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 391 LEU VAL PRO ARG GLY SER HIS MET SER ALA VAL GLU LYS SEQRES 3 A 391 LEU PRO GLU ASP PHE CYS ALA ASN PRO ASP VAL ALA TRP SEQRES 4 A 391 THR PHE PRO LYS VAL PHE TYR THR SER SER GLN VAL PHE SEQRES 5 A 391 GLU HIS GLU LYS GLU ALA ILE PHE ALA LYS SER TRP ILE SEQRES 6 A 391 CYS VAL ALA HIS GLY SER GLU LEU ALA GLN PRO ASN ASP SEQRES 7 A 391 TYR ILE THR ARG LYS VAL ILE GLY GLU ASN ILE VAL ILE SEQRES 8 A 391 ILE ARG GLY LYS ASP SER VAL LEU ARG ALA PHE TYR ASN SEQRES 9 A 391 VAL CYS PRO HIS ARG GLY HIS GLU LEU LEU SER GLY SER SEQRES 10 A 391 GLY LYS ALA LYS ASN VAL ILE THR CYS PRO TYR HIS ALA SEQRES 11 A 391 TRP THR PHE LYS LEU ASP GLY SER LEU ALA LEU ALA ARG SEQRES 12 A 391 ASN CYS ASP HIS VAL GLU SER PHE ASP LYS GLU ASN SER SEQRES 13 A 391 SER MET VAL PRO LEU LYS VAL GLU GLU TYR ALA GLY PHE SEQRES 14 A 391 VAL PHE ILE ASN MET ASP GLU ASN ALA THR CYS VAL GLU SEQRES 15 A 391 ASP GLN LEU PRO GLY PHE ALA GLU ARG LEU ASN GLN ALA SEQRES 16 A 391 CYS GLY VAL ILE LYS ASP LEU LYS LEU ALA ALA ARG PHE SEQRES 17 A 391 VAL THR GLU THR PRO ALA ASN TRP LYS VAL ILE VAL ASP SEQRES 18 A 391 ASN TYR MET GLU CYS TYR HIS ALA GLY PRO ALA HIS PRO SEQRES 19 A 391 GLY PHE ALA ASP SER VAL GLN VAL ASP LYS TYR TRP HIS SEQRES 20 A 391 THR THR HIS GLN ASN TRP THR LEU GLN TYR GLY PHE ALA SEQRES 21 A 391 ARG SER SER GLU LYS SER PHE LYS LEU ASP PRO SER VAL SEQRES 22 A 391 THR ASP PRO GLU PHE HIS GLY PHE TRP THR TRP PRO CYS SEQRES 23 A 391 THR MET PHE ASN VAL PRO PRO GLY SER ASN PHE MET THR SEQRES 24 A 391 VAL ILE TYR GLU PHE PRO VAL ASP ALA GLU THR THR LEU SEQRES 25 A 391 GLN HIS TYR ASP ILE TYR PHE THR ASN GLU GLU LEU THR SEQRES 26 A 391 GLN ASP GLN LYS ASP LEU ILE GLU TRP TYR ARG ASN VAL SEQRES 27 A 391 PHE ARG PRO GLU ASP LEU ASN LEU VAL GLU SER VAL GLN SEQRES 28 A 391 ARG GLY LEU LYS SER ARG GLY TYR ARG GLY GLN GLY ARG SEQRES 29 A 391 ILE MET THR ASP LYS GLN ARG SER GLY ILE SER GLU HIS SEQRES 30 A 391 GLY ILE ALA TYR PHE GLN HIS LEU VAL ALA GLN TYR HIS SEQRES 31 A 391 GLN HET FE A 401 1 HET 152 A 402 26 HET SCN A 403 3 HET FES A 404 4 HETNAM FE FE (III) ION HETNAM 152 CARNITINE HETNAM SCN THIOCYANATE ION HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETSYN 152 (3-CARBOXY-2-(R)-HYDROXY-PROPYL)-TRIMETHYL-AMMONIUM FORMUL 2 FE FE 3+ FORMUL 3 152 C7 H16 N O3 1+ FORMUL 4 SCN C N S 1- FORMUL 5 FES FE2 S2 FORMUL 6 HOH *93(H2 O) HELIX 1 AA1 ASN A 14 ALA A 18 5 5 HELIX 2 AA2 LYS A 23 SER A 28 1 6 HELIX 3 AA3 SER A 28 ILE A 39 1 12 HELIX 4 AA4 SER A 51 ALA A 54 5 4 HELIX 5 AA5 ASN A 124 VAL A 128 5 5 HELIX 6 AA6 LYS A 133 SER A 137 5 5 HELIX 7 AA7 CYS A 160 LEU A 165 1 6 HELIX 8 AA8 GLY A 167 CYS A 176 1 10 HELIX 9 AA9 VAL A 178 LEU A 182 5 5 HELIX 10 AB1 ASN A 195 MET A 204 1 10 HELIX 11 AB2 HIS A 208 HIS A 213 1 6 HELIX 12 AB3 HIS A 213 SER A 219 1 7 HELIX 13 AB4 THR A 305 VAL A 318 1 14 HELIX 14 AB5 VAL A 318 LEU A 334 1 17 HELIX 15 AB6 GLU A 356 GLN A 368 1 13 SHEET 1 AA1 7 ILE A 45 HIS A 49 0 SHEET 2 AA1 7 PHE A 149 ASN A 153 -1 O ILE A 152 N ILE A 45 SHEET 3 AA1 7 PRO A 140 TYR A 146 -1 N GLU A 144 O PHE A 151 SHEET 4 AA1 7 LEU A 79 TYR A 83 -1 N ALA A 81 O LEU A 141 SHEET 5 AA1 7 GLU A 67 ARG A 73 -1 N VAL A 70 O PHE A 82 SHEET 6 AA1 7 ASP A 58 VAL A 64 -1 N ARG A 62 O ILE A 69 SHEET 7 AA1 7 GLY A 98 LYS A 99 -1 O GLY A 98 N TYR A 59 SHEET 1 AA2 2 VAL A 103 THR A 105 0 SHEET 2 AA2 2 THR A 112 LYS A 114 -1 O PHE A 113 N ILE A 104 SHEET 1 AA3 7 LYS A 183 THR A 192 0 SHEET 2 AA3 7 THR A 290 PHE A 299 -1 O ILE A 297 N ALA A 185 SHEET 3 AA3 7 PHE A 277 ASP A 287 -1 N PHE A 284 O LEU A 292 SHEET 4 AA3 7 THR A 267 VAL A 271 -1 N ASN A 270 O THR A 279 SHEET 5 AA3 7 GLU A 257 THR A 263 -1 N PHE A 261 O PHE A 269 SHEET 6 AA3 7 TRP A 233 ALA A 240 -1 N GLN A 236 O GLY A 260 SHEET 7 AA3 7 VAL A 220 THR A 229 -1 N THR A 228 O LEU A 235 LINK SG CYS A 86 FE1 FES A 404 1555 1555 2.35 LINK ND1 HIS A 88 FE2 FES A 404 1555 1555 2.23 LINK SG CYS A 106 FE1 FES A 404 1555 1555 2.23 LINK ND1 HIS A 109 FE2 FES A 404 1555 1555 2.49 LINK NE2 HIS A 208 FE FE A 401 1555 1555 2.42 LINK NE2 HIS A 213 FE FE A 401 1555 1555 2.56 LINK OD1 ASP A 323 FE FE A 401 1555 1555 2.30 LINK OD2 ASP A 323 FE FE A 401 1555 1555 2.51 LINK FE FE A 401 N SCN A 403 1555 1555 2.24 LINK FE FE A 401 O HOH A 517 1555 1555 2.31 CISPEP 1 TRP A 264 PRO A 265 0 -0.71 SITE 1 AC1 5 HIS A 208 HIS A 213 ASP A 323 SCN A 403 SITE 2 AC1 5 HOH A 517 SITE 1 AC2 7 TYR A 203 GLU A 205 TYR A 225 GLN A 236 SITE 2 AC2 7 PHE A 258 ASN A 270 TYR A 295 SITE 1 AC3 5 ALA A 209 HIS A 213 PHE A 319 ASP A 323 SITE 2 AC3 5 FE A 401 SITE 1 AC4 6 CYS A 86 HIS A 88 ARG A 89 CYS A 106 SITE 2 AC4 6 HIS A 109 TRP A 111 CRYST1 91.242 91.242 87.366 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010960 0.006328 0.000000 0.00000 SCALE2 0.000000 0.012655 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011446 0.00000