HEADER VIRAL PROTEIN 11-MAR-20 6YA0 TITLE CRYSTAL STRUCTURE OF TSWV GLYCOPROTEIN N ECTODOMAIN (TRYPSIN TREATED) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOPROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOMATO SPOTTED WILT VIRUS; SOURCE 3 ORGANISM_COMMON: TSWV; SOURCE 4 ORGANISM_TAXID: 1933298; SOURCE 5 GENE: GN, GC; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS ENVELOPE PROTEIN, ATTACHMENT, VIRAL ENTRY, RECEPTOR BINDING, VIRAL KEYWDS 2 ASSEMBLY, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.DESSAU,Y.BAHAT REVDAT 4 16-OCT-24 6YA0 1 REMARK REVDAT 3 24-JAN-24 6YA0 1 REMARK REVDAT 2 14-APR-21 6YA0 1 JRNL REVDAT 1 30-SEP-20 6YA0 0 JRNL AUTH Y.BAHAT,J.ALTER,M.DESSAU JRNL TITL CRYSTAL STRUCTURE OF TOMATO SPOTTED WILT VIRUS G N REVEALS A JRNL TITL 2 DIMER COMPLEX FORMATION AND EVOLUTIONARY LINK TO JRNL TITL 3 ANIMAL-INFECTING VIRUSES JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 26237 2020 JRNL REFN ESSN 1091-6490 JRNL DOI 10.1073/PNAS.2004657117 REMARK 2 REMARK 2 RESOLUTION. 2.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 75.9 REMARK 3 NUMBER OF REFLECTIONS : 14243 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1425 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 6.1600 - 4.8900 1.00 1685 186 0.2193 0.2610 REMARK 3 2 4.8900 - 4.2700 1.00 1684 188 0.1645 0.2171 REMARK 3 3 4.2700 - 3.8800 1.00 1685 187 0.1990 0.2386 REMARK 3 4 3.8800 - 3.6000 0.99 1666 185 0.2401 0.2608 REMARK 3 5 3.6000 - 3.3900 0.87 1461 163 0.2300 0.2862 REMARK 3 6 3.3900 - 3.2200 0.70 1190 132 0.2609 0.3448 REMARK 3 7 3.2200 - 3.0800 0.54 902 99 0.2656 0.2661 REMARK 3 8 3.0800 - 2.9600 0.37 619 70 0.3019 0.3922 REMARK 3 9 2.9600 - 2.8600 0.12 194 21 0.3122 0.4635 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 93.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 91.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -16.6058 2.7064 -9.8881 REMARK 3 T TENSOR REMARK 3 T11: 0.4048 T22: 0.3486 REMARK 3 T33: 0.2396 T12: -0.0541 REMARK 3 T13: -0.0074 T23: -0.0797 REMARK 3 L TENSOR REMARK 3 L11: 3.2031 L22: 2.6204 REMARK 3 L33: 1.3748 L12: -1.5148 REMARK 3 L13: 0.1831 L23: -0.4115 REMARK 3 S TENSOR REMARK 3 S11: -0.0229 S12: 0.3751 S13: -0.0384 REMARK 3 S21: -0.2255 S22: 0.0909 S23: 0.0580 REMARK 3 S31: -0.1510 S32: -0.1545 S33: -0.0151 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YA0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107211. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18724 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.860 REMARK 200 RESOLUTION RANGE LOW (A) : 49.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.414 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.56 REMARK 200 R MERGE FOR SHELL (I) : 1.63500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6Y9M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG 3350 (W/V) 0.1 M TRIS PH 7.5 REMARK 280 2% ETHANOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.42500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 36 REMARK 465 VAL A 37 REMARK 465 GLU A 38 REMARK 465 ILE A 39 REMARK 465 ILE A 40 REMARK 465 ARG A 41 REMARK 465 GLY A 42 REMARK 465 ASP A 43 REMARK 465 HIS A 44 REMARK 465 PRO A 45 REMARK 465 GLU A 46 REMARK 465 VAL A 47 REMARK 465 TYR A 48 REMARK 465 ASP A 49 REMARK 465 ASP A 50 REMARK 465 SER A 51 REMARK 465 ALA A 52 REMARK 465 GLU A 53 REMARK 465 ASN A 54 REMARK 465 GLU A 55 REMARK 465 VAL A 56 REMARK 465 PRO A 57 REMARK 465 THR A 58 REMARK 465 ALA A 59 REMARK 465 ALA A 60 REMARK 465 SER A 61 REMARK 465 ILE A 62 REMARK 465 GLN A 63 REMARK 465 ARG A 64 REMARK 465 LYS A 65 REMARK 465 ALA A 66 REMARK 465 ILE A 67 REMARK 465 LEU A 68 REMARK 465 GLU A 69 REMARK 465 THR A 70 REMARK 465 LEU A 71 REMARK 465 THR A 72 REMARK 465 ASN A 73 REMARK 465 LEU A 74 REMARK 465 MET A 75 REMARK 465 LEU A 76 REMARK 465 GLU A 77 REMARK 465 SER A 78 REMARK 465 GLN A 79 REMARK 465 THR A 80 REMARK 465 PRO A 81 REMARK 465 GLY A 82 REMARK 465 THR A 83 REMARK 465 ARG A 84 REMARK 465 GLN A 85 REMARK 465 ILE A 86 REMARK 465 ARG A 87 REMARK 465 GLU A 88 REMARK 465 GLU A 89 REMARK 465 GLU A 90 REMARK 465 SER A 91 REMARK 465 THR A 92 REMARK 465 ILE A 93 REMARK 465 PRO A 94 REMARK 465 ILE A 95 REMARK 465 PHE A 96 REMARK 465 ALA A 97 REMARK 465 GLU A 98 REMARK 465 SER A 99 REMARK 465 THR A 100 REMARK 465 THR A 101 REMARK 465 GLN A 102 REMARK 465 LYS A 103 REMARK 465 THR A 104 REMARK 465 ILE A 105 REMARK 465 SER A 106 REMARK 465 LYS A 297 REMARK 465 ARG A 298 REMARK 465 VAL A 299 REMARK 465 ARG A 300 REMARK 465 ASP A 301 REMARK 465 CYS A 302 REMARK 465 ILE A 303 REMARK 465 ILE A 304 REMARK 465 LYS A 305 REMARK 465 TYR A 306 REMARK 465 SER A 307 REMARK 465 LYS A 308 REMARK 465 SER A 309 REMARK 465 ILE A 310 REMARK 465 TYR A 311 REMARK 465 LYS A 312 REMARK 465 GLN A 313 REMARK 465 THR A 314 REMARK 465 ALA A 315 REMARK 465 CYS A 316 REMARK 465 ILE A 317 REMARK 465 ASN A 318 REMARK 465 PHE A 319 REMARK 465 SER A 320 REMARK 465 TRP A 321 REMARK 465 ILE A 322 REMARK 465 ARG A 323 REMARK 465 LYS B 36 REMARK 465 VAL B 37 REMARK 465 GLU B 38 REMARK 465 ILE B 39 REMARK 465 ILE B 40 REMARK 465 ARG B 41 REMARK 465 GLY B 42 REMARK 465 ASP B 43 REMARK 465 HIS B 44 REMARK 465 PRO B 45 REMARK 465 GLU B 46 REMARK 465 VAL B 47 REMARK 465 TYR B 48 REMARK 465 ASP B 49 REMARK 465 ASP B 50 REMARK 465 SER B 51 REMARK 465 ALA B 52 REMARK 465 GLU B 53 REMARK 465 ASN B 54 REMARK 465 GLU B 55 REMARK 465 VAL B 56 REMARK 465 PRO B 57 REMARK 465 THR B 58 REMARK 465 ALA B 59 REMARK 465 ALA B 60 REMARK 465 SER B 61 REMARK 465 ILE B 62 REMARK 465 GLN B 63 REMARK 465 ARG B 64 REMARK 465 LYS B 65 REMARK 465 ALA B 66 REMARK 465 ILE B 67 REMARK 465 LEU B 68 REMARK 465 GLU B 69 REMARK 465 THR B 70 REMARK 465 LEU B 71 REMARK 465 THR B 72 REMARK 465 ASN B 73 REMARK 465 LEU B 74 REMARK 465 MET B 75 REMARK 465 LEU B 76 REMARK 465 GLU B 77 REMARK 465 SER B 78 REMARK 465 GLN B 79 REMARK 465 THR B 80 REMARK 465 PRO B 81 REMARK 465 GLY B 82 REMARK 465 THR B 83 REMARK 465 ARG B 84 REMARK 465 GLN B 85 REMARK 465 ILE B 86 REMARK 465 ARG B 87 REMARK 465 GLU B 88 REMARK 465 GLU B 89 REMARK 465 GLU B 90 REMARK 465 SER B 91 REMARK 465 THR B 92 REMARK 465 ILE B 93 REMARK 465 PRO B 94 REMARK 465 ILE B 95 REMARK 465 PHE B 96 REMARK 465 ALA B 97 REMARK 465 GLU B 98 REMARK 465 SER B 99 REMARK 465 THR B 100 REMARK 465 THR B 101 REMARK 465 GLN B 102 REMARK 465 LYS B 103 REMARK 465 THR B 104 REMARK 465 ILE B 105 REMARK 465 SER B 106 REMARK 465 VAL B 107 REMARK 465 LYS B 297 REMARK 465 ARG B 298 REMARK 465 VAL B 299 REMARK 465 ARG B 300 REMARK 465 ASP B 301 REMARK 465 CYS B 302 REMARK 465 ILE B 303 REMARK 465 ILE B 304 REMARK 465 LYS B 305 REMARK 465 TYR B 306 REMARK 465 SER B 307 REMARK 465 LYS B 308 REMARK 465 SER B 309 REMARK 465 ILE B 310 REMARK 465 TYR B 311 REMARK 465 LYS B 312 REMARK 465 GLN B 313 REMARK 465 THR B 314 REMARK 465 ALA B 315 REMARK 465 CYS B 316 REMARK 465 ILE B 317 REMARK 465 ASN B 318 REMARK 465 PHE B 319 REMARK 465 SER B 320 REMARK 465 TRP B 321 REMARK 465 ILE B 322 REMARK 465 ARG B 323 REMARK 465 LYS C 36 REMARK 465 VAL C 37 REMARK 465 GLU C 38 REMARK 465 ILE C 39 REMARK 465 ILE C 40 REMARK 465 ARG C 41 REMARK 465 GLY C 42 REMARK 465 ASP C 43 REMARK 465 HIS C 44 REMARK 465 PRO C 45 REMARK 465 GLU C 46 REMARK 465 VAL C 47 REMARK 465 TYR C 48 REMARK 465 ASP C 49 REMARK 465 ASP C 50 REMARK 465 SER C 51 REMARK 465 ALA C 52 REMARK 465 GLU C 53 REMARK 465 ASN C 54 REMARK 465 GLU C 55 REMARK 465 VAL C 56 REMARK 465 PRO C 57 REMARK 465 THR C 58 REMARK 465 ALA C 59 REMARK 465 ALA C 60 REMARK 465 SER C 61 REMARK 465 ILE C 62 REMARK 465 GLN C 63 REMARK 465 ARG C 64 REMARK 465 LYS C 65 REMARK 465 ALA C 66 REMARK 465 ILE C 67 REMARK 465 LEU C 68 REMARK 465 GLU C 69 REMARK 465 THR C 70 REMARK 465 LEU C 71 REMARK 465 THR C 72 REMARK 465 ASN C 73 REMARK 465 LEU C 74 REMARK 465 MET C 75 REMARK 465 LEU C 76 REMARK 465 GLU C 77 REMARK 465 SER C 78 REMARK 465 GLN C 79 REMARK 465 THR C 80 REMARK 465 PRO C 81 REMARK 465 GLY C 82 REMARK 465 THR C 83 REMARK 465 ARG C 84 REMARK 465 GLN C 85 REMARK 465 ILE C 86 REMARK 465 ARG C 87 REMARK 465 GLU C 88 REMARK 465 GLU C 89 REMARK 465 GLU C 90 REMARK 465 SER C 91 REMARK 465 THR C 92 REMARK 465 ILE C 93 REMARK 465 PRO C 94 REMARK 465 ILE C 95 REMARK 465 PHE C 96 REMARK 465 ALA C 97 REMARK 465 GLU C 98 REMARK 465 SER C 99 REMARK 465 THR C 100 REMARK 465 THR C 101 REMARK 465 GLN C 102 REMARK 465 LYS C 103 REMARK 465 THR C 104 REMARK 465 ILE C 105 REMARK 465 SER C 106 REMARK 465 VAL C 107 REMARK 465 SER C 108 REMARK 465 ASP C 109 REMARK 465 LEU C 110 REMARK 465 PRO C 111 REMARK 465 LEU C 195 REMARK 465 THR C 196 REMARK 465 GLN C 197 REMARK 465 ASP C 198 REMARK 465 ASN C 199 REMARK 465 TYR C 200 REMARK 465 PRO C 201 REMARK 465 ILE C 202 REMARK 465 THR C 203 REMARK 465 TYR C 204 REMARK 465 ASN C 296 REMARK 465 LYS C 297 REMARK 465 ARG C 298 REMARK 465 VAL C 299 REMARK 465 ARG C 300 REMARK 465 ASP C 301 REMARK 465 CYS C 302 REMARK 465 ILE C 303 REMARK 465 ILE C 304 REMARK 465 LYS C 305 REMARK 465 TYR C 306 REMARK 465 SER C 307 REMARK 465 LYS C 308 REMARK 465 SER C 309 REMARK 465 ILE C 310 REMARK 465 TYR C 311 REMARK 465 LYS C 312 REMARK 465 GLN C 313 REMARK 465 THR C 314 REMARK 465 ALA C 315 REMARK 465 CYS C 316 REMARK 465 ILE C 317 REMARK 465 ASN C 318 REMARK 465 PHE C 319 REMARK 465 SER C 320 REMARK 465 TRP C 321 REMARK 465 ILE C 322 REMARK 465 ARG C 323 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 157 NZ LYS B 288 2545 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 156 CA - CB - SG ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 128 -162.32 -105.05 REMARK 500 ASN A 139 74.33 -152.38 REMARK 500 ALA A 232 -136.73 61.97 REMARK 500 PRO A 253 89.16 -40.70 REMARK 500 ASN B 158 38.14 71.50 REMARK 500 ASP C 148 31.31 -92.77 REMARK 500 ASP C 178 1.42 -67.68 REMARK 500 VAL C 185 -4.14 -147.45 REMARK 500 TYR C 207 82.62 48.77 REMARK 500 LYS C 294 72.47 -100.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 NAG D 1 REMARK 615 BMA D 2 REMARK 615 NAG A 401 REMARK 615 NAG A 402 REMARK 615 NAG B 602 REMARK 615 NAG B 603 REMARK 615 NAG C 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6Y9L RELATED DB: PDB REMARK 900 TSWV SGN REMARK 900 RELATED ID: 6Y9M RELATED DB: PDB REMARK 900 TSWV SGN (V8 TREATED) DBREF1 6YA0 A 36 323 UNP A0A3G1GK10_TSWV DBREF2 6YA0 A A0A3G1GK10 36 323 DBREF1 6YA0 B 36 323 UNP A0A3G1GK10_TSWV DBREF2 6YA0 B A0A3G1GK10 36 323 DBREF1 6YA0 C 36 323 UNP A0A3G1GK10_TSWV DBREF2 6YA0 C A0A3G1GK10 36 323 SEQRES 1 A 288 LYS VAL GLU ILE ILE ARG GLY ASP HIS PRO GLU VAL TYR SEQRES 2 A 288 ASP ASP SER ALA GLU ASN GLU VAL PRO THR ALA ALA SER SEQRES 3 A 288 ILE GLN ARG LYS ALA ILE LEU GLU THR LEU THR ASN LEU SEQRES 4 A 288 MET LEU GLU SER GLN THR PRO GLY THR ARG GLN ILE ARG SEQRES 5 A 288 GLU GLU GLU SER THR ILE PRO ILE PHE ALA GLU SER THR SEQRES 6 A 288 THR GLN LYS THR ILE SER VAL SER ASP LEU PRO ASN ASN SEQRES 7 A 288 CYS LEU ASN ALA SER SER LEU LYS CYS GLU ILE LYS GLY SEQRES 8 A 288 ILE SER THR TYR ASN VAL TYR TYR GLN VAL GLU ASN ASN SEQRES 9 A 288 GLY VAL ILE TYR SER CYS VAL SER ASP SER ALA GLU GLY SEQRES 10 A 288 LEU GLU LYS CYS ASP ASN SER LEU ASN LEU PRO LYS ARG SEQRES 11 A 288 PHE SER LYS VAL PRO VAL ILE PRO ILE THR LYS LEU ASP SEQRES 12 A 288 ASN LYS ARG HIS PHE SER VAL GLY THR LYS PHE PHE ILE SEQRES 13 A 288 SER GLU SER LEU THR GLN ASP ASN TYR PRO ILE THR TYR SEQRES 14 A 288 ASN SER TYR PRO THR ASN GLY THR VAL SER LEU GLN THR SEQRES 15 A 288 VAL LYS LEU SER GLY ASP CYS LYS ILE THR LYS SER ASN SEQRES 16 A 288 PHE ALA ASN PRO TYR THR VAL SER ILE THR SER PRO GLU SEQRES 17 A 288 LYS ILE MET GLY TYR LEU ILE LYS LYS PRO GLY GLU ASN SEQRES 18 A 288 VAL GLU HIS LYS VAL ILE SER PHE SER GLY SER ALA SER SEQRES 19 A 288 ILE THR PHE THR GLU GLU MET LEU ASP GLY GLU HIS ASN SEQRES 20 A 288 LEU LEU CYS GLY ASP LYS SER ALA LYS ILE PRO LYS THR SEQRES 21 A 288 ASN LYS ARG VAL ARG ASP CYS ILE ILE LYS TYR SER LYS SEQRES 22 A 288 SER ILE TYR LYS GLN THR ALA CYS ILE ASN PHE SER TRP SEQRES 23 A 288 ILE ARG SEQRES 1 B 288 LYS VAL GLU ILE ILE ARG GLY ASP HIS PRO GLU VAL TYR SEQRES 2 B 288 ASP ASP SER ALA GLU ASN GLU VAL PRO THR ALA ALA SER SEQRES 3 B 288 ILE GLN ARG LYS ALA ILE LEU GLU THR LEU THR ASN LEU SEQRES 4 B 288 MET LEU GLU SER GLN THR PRO GLY THR ARG GLN ILE ARG SEQRES 5 B 288 GLU GLU GLU SER THR ILE PRO ILE PHE ALA GLU SER THR SEQRES 6 B 288 THR GLN LYS THR ILE SER VAL SER ASP LEU PRO ASN ASN SEQRES 7 B 288 CYS LEU ASN ALA SER SER LEU LYS CYS GLU ILE LYS GLY SEQRES 8 B 288 ILE SER THR TYR ASN VAL TYR TYR GLN VAL GLU ASN ASN SEQRES 9 B 288 GLY VAL ILE TYR SER CYS VAL SER ASP SER ALA GLU GLY SEQRES 10 B 288 LEU GLU LYS CYS ASP ASN SER LEU ASN LEU PRO LYS ARG SEQRES 11 B 288 PHE SER LYS VAL PRO VAL ILE PRO ILE THR LYS LEU ASP SEQRES 12 B 288 ASN LYS ARG HIS PHE SER VAL GLY THR LYS PHE PHE ILE SEQRES 13 B 288 SER GLU SER LEU THR GLN ASP ASN TYR PRO ILE THR TYR SEQRES 14 B 288 ASN SER TYR PRO THR ASN GLY THR VAL SER LEU GLN THR SEQRES 15 B 288 VAL LYS LEU SER GLY ASP CYS LYS ILE THR LYS SER ASN SEQRES 16 B 288 PHE ALA ASN PRO TYR THR VAL SER ILE THR SER PRO GLU SEQRES 17 B 288 LYS ILE MET GLY TYR LEU ILE LYS LYS PRO GLY GLU ASN SEQRES 18 B 288 VAL GLU HIS LYS VAL ILE SER PHE SER GLY SER ALA SER SEQRES 19 B 288 ILE THR PHE THR GLU GLU MET LEU ASP GLY GLU HIS ASN SEQRES 20 B 288 LEU LEU CYS GLY ASP LYS SER ALA LYS ILE PRO LYS THR SEQRES 21 B 288 ASN LYS ARG VAL ARG ASP CYS ILE ILE LYS TYR SER LYS SEQRES 22 B 288 SER ILE TYR LYS GLN THR ALA CYS ILE ASN PHE SER TRP SEQRES 23 B 288 ILE ARG SEQRES 1 C 288 LYS VAL GLU ILE ILE ARG GLY ASP HIS PRO GLU VAL TYR SEQRES 2 C 288 ASP ASP SER ALA GLU ASN GLU VAL PRO THR ALA ALA SER SEQRES 3 C 288 ILE GLN ARG LYS ALA ILE LEU GLU THR LEU THR ASN LEU SEQRES 4 C 288 MET LEU GLU SER GLN THR PRO GLY THR ARG GLN ILE ARG SEQRES 5 C 288 GLU GLU GLU SER THR ILE PRO ILE PHE ALA GLU SER THR SEQRES 6 C 288 THR GLN LYS THR ILE SER VAL SER ASP LEU PRO ASN ASN SEQRES 7 C 288 CYS LEU ASN ALA SER SER LEU LYS CYS GLU ILE LYS GLY SEQRES 8 C 288 ILE SER THR TYR ASN VAL TYR TYR GLN VAL GLU ASN ASN SEQRES 9 C 288 GLY VAL ILE TYR SER CYS VAL SER ASP SER ALA GLU GLY SEQRES 10 C 288 LEU GLU LYS CYS ASP ASN SER LEU ASN LEU PRO LYS ARG SEQRES 11 C 288 PHE SER LYS VAL PRO VAL ILE PRO ILE THR LYS LEU ASP SEQRES 12 C 288 ASN LYS ARG HIS PHE SER VAL GLY THR LYS PHE PHE ILE SEQRES 13 C 288 SER GLU SER LEU THR GLN ASP ASN TYR PRO ILE THR TYR SEQRES 14 C 288 ASN SER TYR PRO THR ASN GLY THR VAL SER LEU GLN THR SEQRES 15 C 288 VAL LYS LEU SER GLY ASP CYS LYS ILE THR LYS SER ASN SEQRES 16 C 288 PHE ALA ASN PRO TYR THR VAL SER ILE THR SER PRO GLU SEQRES 17 C 288 LYS ILE MET GLY TYR LEU ILE LYS LYS PRO GLY GLU ASN SEQRES 18 C 288 VAL GLU HIS LYS VAL ILE SER PHE SER GLY SER ALA SER SEQRES 19 C 288 ILE THR PHE THR GLU GLU MET LEU ASP GLY GLU HIS ASN SEQRES 20 C 288 LEU LEU CYS GLY ASP LYS SER ALA LYS ILE PRO LYS THR SEQRES 21 C 288 ASN LYS ARG VAL ARG ASP CYS ILE ILE LYS TYR SER LYS SEQRES 22 C 288 SER ILE TYR LYS GLN THR ALA CYS ILE ASN PHE SER TRP SEQRES 23 C 288 ILE ARG HET NAG D 1 14 HET BMA D 2 11 HET NAG A 401 14 HET NAG A 402 14 HET ACT B 601 4 HET NAG B 602 14 HET NAG B 603 14 HET NAG C 403 14 HET NH4 C 404 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM ACT ACETATE ION HETNAM NH4 AMMONIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 4 NAG 6(C8 H15 N O6) FORMUL 4 BMA C6 H12 O6 FORMUL 7 ACT C2 H3 O2 1- FORMUL 11 NH4 H4 N 1+ FORMUL 12 HOH *32(H2 O) HELIX 1 AA1 LEU A 110 ASN A 116 1 7 HELIX 2 AA2 ALA A 117 SER A 119 5 3 HELIX 3 AA3 LYS A 176 ASP A 178 5 3 HELIX 4 AA4 ASN A 179 PHE A 183 1 5 HELIX 5 AA5 THR A 273 LEU A 277 5 5 HELIX 6 AA6 ASP B 109 CYS B 114 1 6 HELIX 7 AA7 ASN B 179 PHE B 183 1 5 HELIX 8 AA8 VAL B 257 VAL B 261 5 5 HELIX 9 AA9 THR B 273 LEU B 277 5 5 HELIX 10 AB1 ASN C 112 SER C 119 5 8 HELIX 11 AB2 GLY C 152 CYS C 156 5 5 HELIX 12 AB3 LYS C 176 LYS C 180 5 5 SHEET 1 AA1 5 LYS A 121 ILE A 127 0 SHEET 2 AA1 5 VAL A 132 GLU A 137 -1 O TYR A 133 N GLY A 126 SHEET 3 AA1 5 ILE A 142 SER A 147 -1 O TYR A 143 N VAL A 136 SHEET 4 AA1 5 ILE A 202 TYR A 204 1 O THR A 203 N VAL A 146 SHEET 5 AA1 5 TYR A 207 THR A 209 -1 O TYR A 207 N TYR A 204 SHEET 1 AA2 3 VAL A 171 PRO A 173 0 SHEET 2 AA2 3 THR A 212 LEU A 220 -1 O LYS A 219 N ILE A 172 SHEET 3 AA2 3 SER A 184 SER A 192 -1 N SER A 192 O THR A 212 SHEET 1 AA3 3 LYS A 225 LYS A 228 0 SHEET 2 AA3 3 THR A 236 THR A 240 -1 O THR A 240 N LYS A 225 SHEET 3 AA3 3 SER A 267 THR A 271 -1 O ALA A 268 N ILE A 239 SHEET 1 AA4 4 ILE A 262 PHE A 264 0 SHEET 2 AA4 4 MET A 246 LYS A 251 -1 N MET A 246 O PHE A 264 SHEET 3 AA4 4 ASN A 282 CYS A 285 -1 O LEU A 284 N LEU A 249 SHEET 4 AA4 4 LYS A 288 LYS A 291 -1 O ALA A 290 N LEU A 283 SHEET 1 AA5 6 LYS B 121 ILE B 127 0 SHEET 2 AA5 6 VAL B 132 ASN B 138 -1 O TYR B 133 N GLY B 126 SHEET 3 AA5 6 VAL B 141 SER B 147 -1 O SER B 147 N VAL B 132 SHEET 4 AA5 6 TYR B 200 TYR B 204 1 O THR B 203 N VAL B 146 SHEET 5 AA5 6 TYR B 207 LEU B 220 -1 O TYR B 207 N TYR B 204 SHEET 6 AA5 6 VAL B 171 PRO B 173 -1 N ILE B 172 O LYS B 219 SHEET 1 AA6 6 LYS B 121 ILE B 127 0 SHEET 2 AA6 6 VAL B 132 ASN B 138 -1 O TYR B 133 N GLY B 126 SHEET 3 AA6 6 VAL B 141 SER B 147 -1 O SER B 147 N VAL B 132 SHEET 4 AA6 6 TYR B 200 TYR B 204 1 O THR B 203 N VAL B 146 SHEET 5 AA6 6 TYR B 207 LEU B 220 -1 O TYR B 207 N TYR B 204 SHEET 6 AA6 6 SER B 184 SER B 192 -1 N SER B 192 O THR B 212 SHEET 1 AA7 3 LYS B 225 LYS B 228 0 SHEET 2 AA7 3 THR B 236 THR B 240 -1 O THR B 240 N LYS B 225 SHEET 3 AA7 3 SER B 267 THR B 271 -1 O ILE B 270 N VAL B 237 SHEET 1 AA8 7 LYS B 288 LYS B 291 0 SHEET 2 AA8 7 ASN B 282 CYS B 285 -1 N LEU B 283 O ALA B 290 SHEET 3 AA8 7 MET B 246 LYS B 251 -1 N LEU B 249 O LEU B 284 SHEET 4 AA8 7 ILE B 262 SER B 265 -1 O ILE B 262 N TYR B 248 SHEET 5 AA8 7 VAL C 141 SER C 147 1 O ILE C 142 N SER B 265 SHEET 6 AA8 7 VAL C 132 ASN C 138 -1 N VAL C 132 O SER C 147 SHEET 7 AA8 7 LYS C 121 ILE C 127 -1 N LYS C 125 O TYR C 133 SHEET 1 AA9 3 VAL C 171 PRO C 173 0 SHEET 2 AA9 3 VAL C 213 LEU C 220 -1 O LYS C 219 N ILE C 172 SHEET 3 AA9 3 GLY C 186 ILE C 191 -1 N PHE C 190 O SER C 214 SHEET 1 AB1 3 LYS C 225 LYS C 228 0 SHEET 2 AB1 3 VAL C 237 THR C 240 -1 O THR C 240 N LYS C 225 SHEET 3 AB1 3 ALA C 268 ILE C 270 -1 O ALA C 268 N ILE C 239 SHEET 1 AB2 3 TYR C 248 LYS C 251 0 SHEET 2 AB2 3 ASN C 282 CYS C 285 -1 O LEU C 284 N LEU C 249 SHEET 3 AB2 3 LYS C 288 LYS C 291 -1 O LYS C 288 N CYS C 285 SSBOND 1 CYS A 114 CYS A 145 1555 1555 2.03 SSBOND 2 CYS A 122 CYS A 156 1555 1555 2.02 SSBOND 3 CYS A 224 CYS A 285 1555 1555 2.02 SSBOND 4 CYS B 114 CYS B 145 1555 1555 2.02 SSBOND 5 CYS B 122 CYS B 156 1555 1555 2.03 SSBOND 6 CYS B 224 CYS B 285 1555 1555 2.03 SSBOND 7 CYS C 114 CYS C 145 1555 1555 2.01 SSBOND 8 CYS C 122 CYS C 156 1555 1555 2.03 SSBOND 9 CYS C 224 CYS C 285 1555 1555 2.04 LINK ND2 ASN A 116 C1 NAG A 401 1555 1555 1.45 LINK ND2 ASN A 210 C1 NAG A 402 1555 1555 1.45 LINK ND2 ASN B 116 C1 NAG B 602 1555 1555 1.45 LINK ND2 ASN B 210 C1 NAG B 603 1555 1555 1.44 LINK ND2 ASN C 116 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN C 210 C1 NAG C 403 1555 1555 1.44 LINK O4 NAG D 1 C1 BMA D 2 1555 1555 1.44 CRYST1 68.820 74.850 81.280 90.00 103.27 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014531 0.000000 0.003427 0.00000 SCALE2 0.000000 0.013360 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012641 0.00000