HEADER FLUORESCENT PROTEIN 11-MAR-20 6YA9 TITLE CRYSTAL STRUCTURE OF RSGCAMP IN THE ON STATE (NON-ILLUMINATED) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RSCGAMP; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA; SOURCE 3 ORGANISM_TAXID: 6100; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS REVERSIBLE SWITCHABLE FLUORESCENT PROTEIN, CALCIUM SENSOR, KEYWDS 2 CALMODULIN, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.JANOWSKI,J.P.FUENZALIDA-WERNER,K.MISHRA,A.C.STIEL,D.NIESSING REVDAT 3 24-JAN-24 6YA9 1 REMARK REVDAT 2 22-DEC-21 6YA9 1 JRNL REVDAT 1 06-OCT-21 6YA9 0 JRNL AUTH K.MISHRA,J.P.FUENZALIDA-WERNER,F.PENNACCHIETTI,R.JANOWSKI, JRNL AUTH 2 A.CHMYROV,Y.HUANG,C.ZAKIAN,U.KLEMM,I.TESTA,D.NIESSING, JRNL AUTH 3 V.NTZIACHRISTOS,A.C.STIEL JRNL TITL GENETICALLY ENCODED PHOTO-SWITCHABLE MOLECULAR SENSORS FOR JRNL TITL 2 OPTOACOUSTIC AND SUPER-RESOLUTION IMAGING. JRNL REF NAT.BIOTECHNOL. 2021 JRNL REFN ISSN 1087-0156 JRNL PMID 34845372 JRNL DOI 10.1038/S41587-021-01100-5 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 36685 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1828 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2686 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 122 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3190 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 233 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.35000 REMARK 3 B22 (A**2) : 0.35000 REMARK 3 B33 (A**2) : -0.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.158 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.123 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.945 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3261 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2979 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4391 ; 1.735 ; 1.657 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6942 ; 1.329 ; 1.593 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 401 ; 6.987 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;34.061 ;23.846 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 591 ;16.162 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;18.911 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 418 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3666 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 661 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6YA9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107261. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000029 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38514 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 44.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3EK4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.21 M SODIUM FORMATE, 0.1 M BIS-TRIS REMARK 280 -PROPANE BUFFER PH 8.5, 18% (W/V) PEG 3350, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.31000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 59.71500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.71500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.15500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.71500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 59.71500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 72.46500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.71500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.71500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 24.15500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 59.71500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.71500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 72.46500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 48.31000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 729 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 36 REMARK 465 VAL A 37 REMARK 465 GLU A 148 REMARK 465 LEU A 149 REMARK 465 TYR A 150 REMARK 465 LYS A 151 REMARK 465 GLY A 152 REMARK 465 GLY A 153 REMARK 465 THR A 154 REMARK 465 GLY A 155 REMARK 465 GLY A 156 REMARK 465 SER A 157 REMARK 465 LYS A 451 REMARK 465 LEU A 452 REMARK 465 GLU A 453 REMARK 465 HIS A 454 REMARK 465 HIS A 455 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 40 -50.12 -154.83 REMARK 500 MET A 146 89.84 75.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 323 OD1 REMARK 620 2 ASP A 325 OD1 82.4 REMARK 620 3 ASP A 327 OD1 83.1 79.2 REMARK 620 4 THR A 329 O 81.6 157.8 83.7 REMARK 620 5 GLU A 334 OE1 97.2 75.8 154.7 121.5 REMARK 620 6 GLU A 334 OE2 119.0 125.8 146.4 75.8 53.8 REMARK 620 7 HOH A 747 O 162.5 81.2 87.6 112.2 84.9 76.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 359 OD1 REMARK 620 2 ASP A 361 OD1 79.7 REMARK 620 3 ASP A 363 OD1 86.7 78.4 REMARK 620 4 THR A 365 O 87.4 151.6 75.8 REMARK 620 5 ASP A 367 OD1 169.7 91.1 96.0 103.0 REMARK 620 6 GLU A 370 OE1 105.3 128.5 151.7 79.2 76.8 REMARK 620 7 GLU A 370 OE2 91.9 77.2 155.3 128.8 81.5 51.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 505 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 361 OD2 REMARK 620 2 ASP A 363 OD2 90.2 REMARK 620 3 ASP A 367 OD1 72.3 76.1 REMARK 620 4 ASP A 367 OD2 111.2 104.8 49.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 396 OD1 REMARK 620 2 ASP A 398 OD1 80.0 REMARK 620 3 ASP A 398 OD2 116.3 43.5 REMARK 620 4 ASN A 400 OD1 83.3 65.4 93.6 REMARK 620 5 TYR A 402 O 91.3 142.3 150.0 77.3 REMARK 620 6 GLU A 407 OE1 98.8 87.3 60.2 151.9 130.4 REMARK 620 7 GLU A 407 OE2 114.7 141.7 101.5 147.0 75.0 56.6 REMARK 620 8 HOH A 603 O 161.9 81.9 47.3 89.7 103.5 79.7 79.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 432 OD1 REMARK 620 2 ASP A 434 OD1 76.8 REMARK 620 3 ASP A 436 OD1 85.3 80.7 REMARK 620 4 GLN A 438 O 81.6 145.3 70.6 REMARK 620 5 GLU A 443 OE1 103.6 132.6 146.5 78.8 REMARK 620 6 GLU A 443 OE2 89.7 79.8 160.6 127.2 52.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 507 DBREF 6YA9 A 36 455 PDB 6YA9 6YA9 36 455 SEQRES 1 A 418 MET VAL ASP SER SER ARG ARG LYS TRP ASN LYS THR GLY SEQRES 2 A 418 HIS ALA VAL ARG ALA ILE GLY ARG LEU SER SER LEU GLU SEQRES 3 A 418 ASN VAL TYR ILE LYS ALA ASP LYS GLN LYS ASN GLY ILE SEQRES 4 A 418 LYS ALA ASN PHE LYS ILE ARG HIS ASN ILE GLU ASP GLY SEQRES 5 A 418 GLY VAL GLN LEU ALA TYR HIS TYR GLN GLN ASN THR PRO SEQRES 6 A 418 ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP ASN HIS TYR SEQRES 7 A 418 LEU SER VAL GLN SER LYS LEU SER LYS ASP PRO ASN GLU SEQRES 8 A 418 LYS ARG ASP HIS MET VAL LEU LEU GLU PHE VAL THR ALA SEQRES 9 A 418 ALA GLY ILE THR LEU GLY MET ASP GLU LEU TYR LYS GLY SEQRES 10 A 418 GLY THR GLY GLY SER MET VAL SER LYS GLY GLU GLU LEU SEQRES 11 A 418 PHE THR GLY VAL VAL PRO ILE LEU VAL GLU LEU ASP GLY SEQRES 12 A 418 ASP VAL ASN GLY HIS LYS PHE SER VAL SER GLY GLU GLY SEQRES 13 A 418 GLU GLY ASP ALA THR TYR GLY LYS LEU THR LEU LYS PHE SEQRES 14 A 418 ILE CYS THR THR GLY LYS LEU PRO VAL PRO TRP PRO THR SEQRES 15 A 418 LEU VAL THR THR LEU PIA VAL LEU CYS PHE SER ARG TYR SEQRES 16 A 418 PRO ASP HIS MET LYS GLN HIS ASP PHE PHE LYS SER ALA SEQRES 17 A 418 MET PRO GLU GLY TYR ILE GLN GLU ARG THR ILE PHE PHE SEQRES 18 A 418 LYS ASP ASP GLY ASN TYR LYS THR ARG ALA GLU VAL LYS SEQRES 19 A 418 PHE GLU GLY ASP THR LEU VAL ASN ARG ILE GLU LEU LYS SEQRES 20 A 418 GLY ILE ASP PHE LYS GLU ASP GLY ASN ILE LEU GLY HIS SEQRES 21 A 418 LYS LEU GLU TYR ASN THR ARG ASP GLN LEU THR GLU GLU SEQRES 22 A 418 GLN ILE ALA GLU PHE LYS GLU ALA PHE SER LEU PHE ASP SEQRES 23 A 418 LYS ASP GLY ASP GLY THR ILE THR THR LYS GLU LEU GLY SEQRES 24 A 418 THR VAL MET ARG SER LEU GLY GLN ASN PRO THR GLU ALA SEQRES 25 A 418 GLU LEU GLN ASP MET ILE ASN GLU VAL ASP ALA ASP GLY SEQRES 26 A 418 ASP GLY THR ILE ASP PHE PRO GLU PHE LEU THR MET MET SEQRES 27 A 418 ALA ARG LYS MET LYS TYR THR ASP SER GLU GLU GLU ILE SEQRES 28 A 418 ARG GLU ALA PHE ARG VAL PHE ASP LYS ASP GLY ASN GLY SEQRES 29 A 418 TYR ILE SER ALA ALA GLU LEU ARG HIS VAL MET THR ASN SEQRES 30 A 418 LEU GLY GLU LYS LEU THR ASP GLU GLU VAL ASP GLU MET SEQRES 31 A 418 ILE ARG GLU ALA ASP ILE ASP GLY ASP GLY GLN VAL ASN SEQRES 32 A 418 TYR GLU GLU PHE VAL GLN MET MET THR ALA LYS LEU GLU SEQRES 33 A 418 HIS HIS HET PIA A 224 20 HET CA A 501 1 HET CA A 502 1 HET CA A 503 1 HET CA A 504 1 HET CA A 505 1 HET CA A 506 1 HET CA A 507 1 HETNAM PIA [(4Z)-2-[(1S)-1-AMINOETHYL]-4-(4-HYDROXYBENZYLIDENE)-5- HETNAM 2 PIA OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL]ACETIC ACID HETNAM CA CALCIUM ION FORMUL 1 PIA C14 H15 N3 O4 FORMUL 2 CA 7(CA 2+) FORMUL 9 HOH *233(H2 O) HELIX 1 AA1 SER A 40 SER A 58 1 19 HELIX 2 AA2 LYS A 69 ASN A 72 5 4 HELIX 3 AA3 SER A 160 THR A 167 5 8 HELIX 4 AA4 PRO A 214 VAL A 219 5 6 HELIX 5 AA5 VAL A 226 SER A 230 5 5 HELIX 6 AA6 PRO A 233 HIS A 239 5 7 HELIX 7 AA7 ASP A 240 ALA A 245 1 6 HELIX 8 AA8 THR A 308 ASP A 323 1 16 HELIX 9 AA9 THR A 331 LEU A 342 1 12 HELIX 10 AB1 THR A 347 GLU A 357 1 11 HELIX 11 AB2 PHE A 368 TYR A 381 1 14 HELIX 12 AB3 SER A 384 ASP A 396 1 13 HELIX 13 AB4 SER A 404 LEU A 415 1 12 HELIX 14 AB5 THR A 420 ASP A 432 1 13 HELIX 15 AB6 TYR A 441 MET A 448 1 8 SHEET 1 AA112 VAL A 63 ASP A 68 0 SHEET 2 AA112 GLY A 73 ASN A 83 -1 O GLY A 73 N ASP A 68 SHEET 3 AA112 VAL A 89 PRO A 100 -1 O HIS A 94 N PHE A 78 SHEET 4 AA112 TYR A 250 PHE A 258 -1 O PHE A 257 N TYR A 93 SHEET 5 AA112 ASN A 263 GLU A 273 -1 O ALA A 268 N GLN A 252 SHEET 6 AA112 THR A 276 ILE A 286 -1 O GLU A 282 N ARG A 267 SHEET 7 AA112 VAL A 169 VAL A 180 1 N GLU A 175 O ILE A 281 SHEET 8 AA112 HIS A 183 ASP A 194 -1 O PHE A 185 N GLY A 178 SHEET 9 AA112 LYS A 199 CYS A 206 -1 O LYS A 199 N ASP A 194 SHEET 10 AA112 HIS A 130 ALA A 140 -1 N LEU A 133 O LEU A 202 SHEET 11 AA112 HIS A 112 SER A 121 -1 N LYS A 119 O LEU A 134 SHEET 12 AA112 VAL A 63 ASP A 68 -1 N VAL A 63 O LEU A 114 SHEET 1 AA2 2 THR A 329 ILE A 330 0 SHEET 2 AA2 2 ILE A 366 ASP A 367 -1 O ILE A 366 N ILE A 330 SHEET 1 AA3 2 TYR A 402 ILE A 403 0 SHEET 2 AA3 2 VAL A 439 ASN A 440 -1 O VAL A 439 N ILE A 403 LINK C LEU A 222 N1 PIA A 224 1555 1555 1.41 LINK C3 PIA A 224 N VAL A 226 1555 1555 1.39 LINK OD1 ASP A 323 CA CA A 502 1555 1555 2.25 LINK OD1 ASP A 325 CA CA A 502 1555 1555 2.45 LINK OD1 ASP A 327 CA CA A 502 1555 1555 2.38 LINK O THR A 329 CA CA A 502 1555 1555 2.43 LINK OE1 GLU A 334 CA CA A 502 1555 1555 2.48 LINK OE2 GLU A 334 CA CA A 502 1555 1555 2.56 LINK OD1 ASP A 359 CA CA A 503 1555 1555 2.28 LINK OD1 ASP A 361 CA CA A 503 1555 1555 2.43 LINK OD2 ASP A 361 CA CA A 505 1555 1555 2.61 LINK OD1 ASP A 363 CA CA A 503 1555 1555 2.47 LINK OD2 ASP A 363 CA CA A 505 1555 1555 2.90 LINK O THR A 365 CA CA A 503 1555 1555 2.32 LINK OD1 ASP A 367 CA CA A 503 1555 1555 2.63 LINK OD1 ASP A 367 CA CA A 505 1555 1555 2.82 LINK OD2 ASP A 367 CA CA A 505 1555 1555 2.72 LINK OE1 GLU A 370 CA CA A 503 1555 1555 2.48 LINK OE2 GLU A 370 CA CA A 503 1555 1555 2.63 LINK OD1 ASP A 396 CA CA A 504 1555 1555 2.70 LINK OD1 ASP A 398 CA CA A 504 1555 1555 2.83 LINK OD2 ASP A 398 CA CA A 504 1555 1555 3.06 LINK OD1 ASN A 400 CA CA A 504 1555 1555 2.21 LINK O TYR A 402 CA CA A 504 1555 1555 2.34 LINK OE1 GLU A 407 CA CA A 504 1555 1555 2.32 LINK OE2 GLU A 407 CA CA A 504 1555 1555 2.35 LINK OD1 ASP A 432 CA CA A 501 1555 1555 2.28 LINK OD1 ASP A 434 CA CA A 501 1555 1555 2.67 LINK OD1 ASP A 436 CA CA A 501 1555 1555 2.56 LINK O GLN A 438 CA CA A 501 1555 1555 2.32 LINK OE1 GLU A 443 CA CA A 501 1555 1555 2.49 LINK OE2 GLU A 443 CA CA A 501 1555 1555 2.51 LINK CA CA A 502 O HOH A 747 1555 1555 2.23 LINK CA CA A 504 O HOH A 603 1555 1555 2.62 LINK CA CA A 506 O HOH A 797 1555 1555 2.61 LINK CA CA A 507 O HOH A 798 1555 1555 3.07 CISPEP 1 MET A 246 PRO A 247 0 4.22 SITE 1 AC1 5 ASP A 432 ASP A 434 ASP A 436 GLN A 438 SITE 2 AC1 5 GLU A 443 SITE 1 AC2 6 ASP A 323 ASP A 325 ASP A 327 THR A 329 SITE 2 AC2 6 GLU A 334 HOH A 747 SITE 1 AC3 6 ASP A 359 ASP A 361 ASP A 363 THR A 365 SITE 2 AC3 6 ASP A 367 GLU A 370 SITE 1 AC4 6 ASP A 396 ASP A 398 ASN A 400 TYR A 402 SITE 2 AC4 6 GLU A 407 HOH A 603 SITE 1 AC5 3 ASP A 361 ASP A 363 ASP A 367 SITE 1 AC6 2 THR A 255 HOH A 797 SITE 1 AC7 2 ASP A 383 HOH A 798 CRYST1 119.430 119.430 96.620 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008373 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008373 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010350 0.00000