HEADER FLAVOPROTEIN 12-MAR-20 6YAO TITLE CRYSTAL STRUCTURE OF ZMCKO4A IN COMPLEX WITH INHIBITOR 1-[2-(2- TITLE 2 HYDROXY-ETHYL)-PHENYL]-3-(3-TRIFLUOROMETHOXY-PHENYL)-UREA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOKININ DEHYDROGENASE 4; COMPND 3 CHAIN: A; COMPND 4 EC: 1.5.99.12; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZEA MAYS; SOURCE 3 ORGANISM_COMMON: MAIZE; SOURCE 4 ORGANISM_TAXID: 4577; SOURCE 5 GENE: CKX4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FLAVOPROTEIN, CYTOKININ OXIDASE/DEHYDROGENASE, PHENYL-UREA INHIBITOR, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.KOPECNY,P.BRIOZZO,S.MORERA REVDAT 4 16-OCT-24 6YAO 1 REMARK REVDAT 3 24-JAN-24 6YAO 1 REMARK REVDAT 2 03-MAR-21 6YAO 1 JRNL REVDAT 1 14-OCT-20 6YAO 0 JRNL AUTH J.NISLER,D.KOPECNY,Z.PEKNA,R.KONCITIKOVA,R.KOPRNA, JRNL AUTH 2 N.MURVANIDZE,S.P.O.WERBROUCK,L.HAVLICEK,N.DE DIEGO, JRNL AUTH 3 M.KOPECNA,Z.WIMMER,P.BRIOZZO,S.MORERA,D.ZALABAK,L.SPICHAL, JRNL AUTH 4 M.STRNAD JRNL TITL DIPHENYLUREA-DERIVED CYTOKININ OXIDASE/DEHYDROGENASE JRNL TITL 2 INHIBITORS FOR BIOTECHNOLOGY AND AGRICULTURE. JRNL REF J.EXP.BOT. V. 72 355 2021 JRNL REFN ESSN 1460-2431 JRNL PMID 32945834 JRNL DOI 10.1093/JXB/ERAA437 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 45296 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2265 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.05 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3311 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2517 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3145 REMARK 3 BIN R VALUE (WORKING SET) : 0.2511 REMARK 3 BIN FREE R VALUE : 0.2626 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.01 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 166 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3479 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 101 REMARK 3 SOLVENT ATOMS : 197 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.29530 REMARK 3 B22 (A**2) : -8.29530 REMARK 3 B33 (A**2) : 16.59070 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.280 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.141 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.130 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.137 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.129 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3668 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4973 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1210 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 661 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3668 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 438 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4146 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.98 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.44 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.71 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YAO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107292. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45358 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 29.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.210 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 17.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.49000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4OAL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, MPD, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 101.83550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.85650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.85650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 152.75325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.85650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.85650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.91775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.85650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.85650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 152.75325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.85650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.85650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 50.91775 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 101.83550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ARG A 3 REMARK 465 CYS A 4 REMARK 465 LEU A 5 REMARK 465 MET A 6 REMARK 465 PHE A 7 REMARK 465 THR A 8 REMARK 465 LEU A 9 REMARK 465 LEU A 10 REMARK 465 PHE A 11 REMARK 465 LEU A 12 REMARK 465 VAL A 13 REMARK 465 SER A 14 REMARK 465 SER A 15 REMARK 465 LEU A 16 REMARK 465 ILE A 17 REMARK 465 SER A 18 REMARK 465 THR A 19 REMARK 465 VAL A 20 REMARK 465 GLY A 21 REMARK 465 LEU A 22 REMARK 465 PRO A 23 REMARK 465 VAL A 24 REMARK 465 GLU A 25 REMARK 465 PRO A 26 REMARK 465 PRO A 27 REMARK 465 ALA A 28 REMARK 465 GLU A 29 REMARK 465 LEU A 30 REMARK 465 LEU A 31 REMARK 465 GLN A 32 REMARK 465 LEU A 33 REMARK 465 GLY A 34 REMARK 465 GLY A 35 REMARK 465 GLY A 36 REMARK 465 ASP A 37 REMARK 465 VAL A 38 REMARK 465 GLY A 39 REMARK 465 GLY A 119 REMARK 465 ARG A 120 REMARK 465 GLY A 121 REMARK 465 PRO A 122 REMARK 465 GLY A 123 REMARK 465 ALA A 124 REMARK 465 ALA A 125 REMARK 465 SER A 275 REMARK 465 GLY A 276 REMARK 465 GLY A 277 REMARK 465 LEU A 294 REMARK 465 ILE A 295 REMARK 465 ASN A 296 REMARK 465 ASN A 297 REMARK 465 TRP A 298 REMARK 465 ARG A 299 REMARK 465 SER A 300 REMARK 465 SER A 301 REMARK 465 PHE A 302 REMARK 465 PHE A 303 REMARK 465 SER A 304 REMARK 465 PRO A 305 REMARK 465 GLN A 306 REMARK 465 ASN A 307 REMARK 465 PRO A 308 REMARK 465 VAL A 309 REMARK 465 LYS A 310 REMARK 465 LEU A 311 REMARK 465 THR A 312 REMARK 465 SER A 313 REMARK 465 LEU A 314 REMARK 465 LYS A 315 REMARK 465 HIS A 316 REMARK 465 HIS A 317 REMARK 465 SER A 318 REMARK 465 ARG A 414 REMARK 465 THR A 415 REMARK 465 ALA A 416 REMARK 465 GLY A 417 REMARK 465 PRO A 532 REMARK 465 GLY A 533 REMARK 465 SER A 534 REMARK 465 PRO A 535 REMARK 465 ALA A 536 REMARK 465 LEU A 537 REMARK 465 ALA A 538 REMARK 465 ALA A 539 REMARK 465 ASP A 540 REMARK 465 SER A 541 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 60 -58.90 -123.17 REMARK 500 SER A 103 47.41 -143.28 REMARK 500 TYR A 173 57.59 -90.74 REMARK 500 ASN A 182 -73.43 -119.16 REMARK 500 ALA A 183 -52.06 -173.17 REMARK 500 SER A 186 -168.42 -160.79 REMARK 500 VAL A 406 -63.96 -103.65 REMARK 500 LEU A 452 60.21 -105.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 897 DISTANCE = 7.04 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OJ2 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 608 DBREF 6YAO A 1 541 UNP E3T1W8 E3T1W8_MAIZE 1 541 SEQRES 1 A 541 MET THR ARG CYS LEU MET PHE THR LEU LEU PHE LEU VAL SEQRES 2 A 541 SER SER LEU ILE SER THR VAL GLY LEU PRO VAL GLU PRO SEQRES 3 A 541 PRO ALA GLU LEU LEU GLN LEU GLY GLY GLY ASP VAL GLY SEQRES 4 A 541 GLY GLY ARG LEU SER VAL ASP ALA SER ASP ILE ALA GLU SEQRES 5 A 541 ALA SER ARG ASP PHE GLY GLY VAL ALA ARG ALA GLU PRO SEQRES 6 A 541 MET ALA VAL PHE HIS PRO ARG ALA ALA GLY ASP VAL ALA SEQRES 7 A 541 GLY LEU VAL GLY ALA ALA PHE ARG SER ALA ARG GLY PHE SEQRES 8 A 541 ARG VAL SER ALA ARG GLY HIS GLY HIS SER ILE SER GLY SEQRES 9 A 541 GLN ALA GLN ALA ALA GLY GLY VAL VAL VAL ASP MET SER SEQRES 10 A 541 ARG GLY ARG GLY PRO GLY ALA ALA VAL ALA ARG ALA LEU SEQRES 11 A 541 PRO VAL HIS SER ALA ALA LEU GLY GLY HIS TYR VAL ASP SEQRES 12 A 541 VAL TRP GLY GLY GLU LEU TRP VAL ASP VAL LEU ASN TRP SEQRES 13 A 541 THR LEU SER HIS GLY GLY LEU ALA PRO ARG SER TRP THR SEQRES 14 A 541 ASP TYR LEU TYR LEU SER VAL GLY GLY THR LEU SER ASN SEQRES 15 A 541 ALA GLY ILE SER GLY GLN ALA PHE HIS HIS GLY PRO GLN SEQRES 16 A 541 ILE SER ASN VAL TYR GLU LEU ASP VAL VAL THR GLY LYS SEQRES 17 A 541 GLY GLU VAL VAL THR CYS SER GLU THR GLU ASN PRO ASP SEQRES 18 A 541 LEU PHE PHE GLY VAL LEU GLY GLY LEU GLY GLN PHE GLY SEQRES 19 A 541 ILE ILE THR ARG ALA ARG ILE ALA LEU GLU ARG ALA PRO SEQRES 20 A 541 LYS ARG VAL ARG TRP ILE ARG ALA LEU TYR SER ASN PHE SEQRES 21 A 541 SER GLU PHE THR ALA ASP GLN GLU ARG LEU ILE SER LEU SEQRES 22 A 541 GLY SER GLY GLY GLY ARG ARG PHE ASP TYR VAL GLU GLY SEQRES 23 A 541 PHE VAL VAL ALA ALA GLU GLY LEU ILE ASN ASN TRP ARG SEQRES 24 A 541 SER SER PHE PHE SER PRO GLN ASN PRO VAL LYS LEU THR SEQRES 25 A 541 SER LEU LYS HIS HIS SER SER VAL LEU TYR CYS LEU GLU SEQRES 26 A 541 VAL THR LYS ASN TYR ASP ASP GLU THR ALA GLY SER VAL SEQRES 27 A 541 ASP GLN ASP VAL ASP THR LEU LEU GLY GLU LEU ASN PHE SEQRES 28 A 541 LEU PRO GLY THR VAL PHE THR THR ASP LEU PRO TYR VAL SEQRES 29 A 541 ASP PHE LEU ASP ARG VAL HIS LYS ALA GLU LEU LYS LEU SEQRES 30 A 541 ARG ALA LYS GLY MET TRP GLU VAL PRO HIS PRO TRP LEU SEQRES 31 A 541 ASN LEU PHE VAL PRO ALA SER ARG ILE ALA ASP PHE ASP SEQRES 32 A 541 ARG GLY VAL PHE ARG GLY VAL LEU GLY GLY ARG THR ALA SEQRES 33 A 541 GLY ALA GLY GLY PRO VAL LEU ILE TYR PRO MET ASN LYS SEQRES 34 A 541 HIS LYS TRP ASP PRO ARG SER SER ALA VAL THR PRO ASP SEQRES 35 A 541 GLU GLU VAL PHE TYR LEU VAL ALA PHE LEU ARG SER ALA SEQRES 36 A 541 LEU PRO GLY ALA PRO GLU SER LEU GLU ALA LEU ALA ARG SEQRES 37 A 541 GLN ASN GLN ARG ILE LEU ASP PHE CYS ALA GLY THR GLY SEQRES 38 A 541 ILE GLY ALA LYS GLN TYR LEU PRO GLY HIS LYS ALA ARG SEQRES 39 A 541 HIS GLU TRP ALA GLU HIS PHE GLY ALA ALA ARG TRP ASP SEQRES 40 A 541 ARG PHE ALA ARG LEU LYS ALA GLU PHE ASP PRO ARG ALA SEQRES 41 A 541 ILE LEU ALA ALA GLY GLN GLY ILE PHE ARG PRO PRO GLY SEQRES 42 A 541 SER PRO ALA LEU ALA ALA ASP SER HET FAD A 601 53 HET OJ2 A 602 24 HET EDO A 603 4 HET EDO A 604 4 HET EDO A 605 4 HET EDO A 606 4 HET DMS A 607 4 HET DMS A 608 4 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM OJ2 1-[2-(2-HYDROXY-ETHYL)-PHENYL]-3-(3-TRIFLUOROMETHOXY- HETNAM 2 OJ2 PHENYL)-UREA HETNAM EDO 1,2-ETHANEDIOL HETNAM DMS DIMETHYL SULFOXIDE HETSYN OJ2 1-[2-(2-HYDROXYETHYL)PHENYL]-3-[3-(TRIFLUOROMETHYLOXY) HETSYN 2 OJ2 PHENYL]UREA HETSYN EDO ETHYLENE GLYCOL FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 OJ2 C16 H15 F3 N2 O3 FORMUL 4 EDO 4(C2 H6 O2) FORMUL 8 DMS 2(C2 H6 O S) FORMUL 10 HOH *197(H2 O) HELIX 1 AA1 ASP A 46 SER A 54 1 9 HELIX 2 AA2 ALA A 73 SER A 87 1 15 HELIX 3 AA3 LEU A 149 HIS A 160 1 12 HELIX 4 AA4 SER A 175 SER A 181 1 7 HELIX 5 AA5 GLN A 188 GLY A 193 1 6 HELIX 6 AA6 PRO A 194 SER A 197 5 4 HELIX 7 AA7 ASN A 219 LEU A 227 1 9 HELIX 8 AA8 ASN A 259 ILE A 271 1 13 HELIX 9 AA9 SER A 337 GLU A 348 1 12 HELIX 10 AB1 TYR A 363 ASP A 368 1 6 HELIX 11 AB2 ASP A 368 ALA A 379 1 12 HELIX 12 AB3 ARG A 398 VAL A 406 1 9 HELIX 13 AB4 HIS A 430 TRP A 432 5 3 HELIX 14 AB5 ALA A 459 THR A 480 1 22 HELIX 15 AB6 ALA A 493 GLY A 502 1 10 HELIX 16 AB7 GLY A 502 ASP A 517 1 16 HELIX 17 AB8 ALA A 523 GLY A 527 5 5 SHEET 1 AA1 4 ARG A 42 SER A 44 0 SHEET 2 AA1 4 ALA A 67 HIS A 70 -1 O VAL A 68 N SER A 44 SHEET 3 AA1 4 VAL A 112 ASP A 115 1 O VAL A 113 N PHE A 69 SHEET 4 AA1 4 VAL A 93 ARG A 96 1 N SER A 94 O VAL A 114 SHEET 1 AA2 4 VAL A 132 SER A 134 0 SHEET 2 AA2 4 GLY A 139 TRP A 145 -1 O TYR A 141 N VAL A 132 SHEET 3 AA2 4 ILE A 235 ARG A 245 -1 O ALA A 239 N VAL A 144 SHEET 4 AA2 4 LEU A 163 ALA A 164 -1 N ALA A 164 O GLU A 244 SHEET 1 AA3 5 VAL A 132 SER A 134 0 SHEET 2 AA3 5 GLY A 139 TRP A 145 -1 O TYR A 141 N VAL A 132 SHEET 3 AA3 5 ILE A 235 ARG A 245 -1 O ALA A 239 N VAL A 144 SHEET 4 AA3 5 VAL A 199 VAL A 205 -1 N TYR A 200 O ARG A 240 SHEET 5 AA3 5 VAL A 211 CYS A 214 -1 O VAL A 212 N VAL A 204 SHEET 1 AA4 4 TYR A 283 ALA A 290 0 SHEET 2 AA4 4 VAL A 320 TYR A 330 -1 O LEU A 321 N VAL A 289 SHEET 3 AA4 4 ARG A 249 TYR A 257 -1 N ILE A 253 O VAL A 326 SHEET 4 AA4 4 PHE A 357 PRO A 362 -1 O PHE A 357 N ARG A 254 SHEET 1 AA5 4 VAL A 422 ASN A 428 0 SHEET 2 AA5 4 VAL A 445 PHE A 451 -1 O ALA A 450 N LEU A 423 SHEET 3 AA5 4 LEU A 390 PRO A 395 -1 N LEU A 390 O PHE A 451 SHEET 4 AA5 4 LYS A 485 TYR A 487 -1 O LYS A 485 N PHE A 393 LINK ND1 HIS A 100 C8M FAD A 601 1555 1555 1.45 CISPEP 1 LEU A 273 GLY A 274 0 1.39 SITE 1 AC1 32 PHE A 57 ALA A 95 ARG A 96 GLY A 97 SITE 2 AC1 32 HIS A 98 GLY A 99 HIS A 100 SER A 101 SITE 3 AC1 32 GLN A 105 ALA A 106 THR A 169 ASP A 170 SITE 4 AC1 32 TYR A 171 LEU A 174 SER A 175 GLY A 177 SITE 5 AC1 32 GLY A 178 SER A 181 ASN A 182 GLY A 184 SITE 6 AC1 32 ILE A 185 GLY A 234 ILE A 235 ILE A 236 SITE 7 AC1 32 TRP A 389 TYR A 487 GLN A 526 OJ2 A 602 SITE 8 AC1 32 HOH A 761 HOH A 781 HOH A 806 HOH A 827 SITE 1 AC2 11 ASP A 170 GLU A 285 VAL A 370 LEU A 377 SITE 2 AC2 11 TRP A 389 ASN A 391 LEU A 423 TYR A 425 SITE 3 AC2 11 LEU A 448 LEU A 452 FAD A 601 SITE 1 AC3 8 LYS A 429 TRP A 432 ASP A 433 PRO A 434 SITE 2 AC3 8 SER A 436 ALA A 438 THR A 440 ARG A 505 SITE 1 AC4 2 TRP A 252 THR A 359 SITE 1 AC5 4 SER A 261 THR A 264 GLU A 268 ARG A 404 SITE 1 AC6 4 LEU A 346 GLY A 347 LEU A 349 PHE A 351 SITE 1 AC7 4 ASP A 143 ARG A 238 ARG A 240 HOH A 744 SITE 1 AC8 2 ALA A 484 GLN A 486 CRYST1 79.713 79.713 203.671 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012545 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012545 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004910 0.00000