HEADER SUGAR BINDING PROTEIN 13-MAR-20 6YAU TITLE CRYSTAL STRUCTURE OF ASGPR 1 IN COMPLEX WITH GN-A. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASIALOGLYCOPROTEIN RECEPTOR 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASGPR 1,C-TYPE LECTIN DOMAIN FAMILY 4 MEMBER H1,HEPATIC COMPND 5 LECTIN H1,HL-1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ASGR1, CLEC4H1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ASIALOG GLYCOPROTEIN RECEPTOR, LIVER IMAGING, NASH, SUGAR BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.A.SCHREUDER,A.LIESUM REVDAT 3 13-NOV-24 6YAU 1 REMARK REVDAT 2 24-JAN-24 6YAU 1 REMARK REVDAT 1 13-JAN-21 6YAU 0 JRNL AUTH A.MISHRA,T.R.CASTANEDA,E.BADER,B.ELSHORST,S.CUMMINGS, JRNL AUTH 2 P.SCHERER,D.S.BANGARI,C.LOEWE,H.SCHREUDER,C.POVERLEIN, JRNL AUTH 3 M.HELMS,S.JONES,G.ZECH,T.LICHER,M.WAGNER,M.SCHUDOK, JRNL AUTH 4 M.DE HOOP,A.T.PLOWRIGHT,J.ATZRODT,A.KANNT,I.LAITINEN, JRNL AUTH 5 V.DERDAU JRNL TITL TRIANTENNARY GALNAC MOLECULAR IMAGING PROBES FOR MONITORING JRNL TITL 2 HEPATOCYTE FUNCTION IN A RAT MODEL OF NONALCOHOLIC JRNL TITL 3 STEATOHEPATITIS. JRNL REF ADV SCI V. 7 02997 2020 JRNL REFN ESSN 2198-3844 JRNL PMID 33344141 JRNL DOI 10.1002/ADVS.202002997 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 54.6 REMARK 3 NUMBER OF REFLECTIONS : 16299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 842 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 42 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.51 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 5.75 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 389 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1999 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 370 REMARK 3 BIN R VALUE (WORKING SET) : 0.1994 REMARK 3 BIN FREE R VALUE : 0.2103 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.88 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 19 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1077 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 174 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22570 REMARK 3 B22 (A**2) : -0.19560 REMARK 3 B33 (A**2) : -0.03010 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.27350 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.200 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.110 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.111 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.100 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.105 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1189 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1634 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 398 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 211 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1189 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 134 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 5 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1492 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.01 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YAU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107293. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999910 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16299 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.397 REMARK 200 RESOLUTION RANGE LOW (A) : 57.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 55.7 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 10.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.91200 REMARK 200 R SYM FOR SHELL (I) : 0.91200 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1DV8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN BUFFER: 20 MM TRIS-HCL (PH REMARK 280 7.4), 25 MM CACL2. RESERVOIR: 100 MM TRIS-HCL (PH 7.5), 28% REMARK 280 PEG4000, PH 7.50, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.37500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 16.26500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.37500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 16.26500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1111 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1255 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 146 REMARK 465 GLY A 147 REMARK 465 SER A 148 REMARK 465 GLU A 149 REMARK 465 ARG A 150 REMARK 465 THR A 151 REMARK 465 ASP A 281 REMARK 465 LYS A 282 REMARK 465 ALA A 283 REMARK 465 SER A 284 REMARK 465 GLN A 285 REMARK 465 GLU A 286 REMARK 465 PRO A 287 REMARK 465 PRO A 288 REMARK 465 LEU A 289 REMARK 465 LEU A 290 REMARK 465 GLY A 291 REMARK 465 SER A 292 REMARK 465 HIS A 293 REMARK 465 HIS A 294 REMARK 465 HIS A 295 REMARK 465 HIS A 296 REMARK 465 HIS A 297 REMARK 465 HIS A 298 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1234 O HOH A 1234 2556 1.80 REMARK 500 O HOH A 1179 O HOH A 1179 2555 1.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 161 -72.69 67.13 REMARK 500 ARG A 162 25.69 -159.72 REMARK 500 ASN A 217 58.40 -151.82 REMARK 500 ASN A 234 39.44 -140.36 REMARK 500 GLU A 238 4.27 82.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OJB A 1004 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 190 O REMARK 620 2 GLU A 196 OE1 84.6 REMARK 620 3 GLU A 196 OE2 73.3 48.6 REMARK 620 4 GLU A 277 OE1 80.1 89.1 131.0 REMARK 620 5 GLU A 277 OE2 129.7 84.6 128.6 50.8 REMARK 620 6 HOH A1130 O 101.0 161.9 149.5 75.0 78.6 REMARK 620 7 HOH A1133 O 81.9 126.8 78.2 137.7 140.4 71.3 REMARK 620 8 HOH A1216 O 149.4 88.5 79.8 129.7 79.0 94.8 78.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 215 OD1 REMARK 620 2 ASP A 215 OD2 53.5 REMARK 620 3 ASP A 242 OD1 160.0 145.6 REMARK 620 4 GLU A 252 O 90.0 130.5 77.6 REMARK 620 5 ASP A 253 OD1 76.0 119.7 85.2 71.6 REMARK 620 6 HOH A1120 O 106.8 84.4 85.3 75.1 146.6 REMARK 620 7 HOH A1148 O 87.7 79.9 90.8 136.9 66.1 146.0 REMARK 620 8 HOH A1179 O 120.7 70.6 75.7 146.9 124.4 83.6 62.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 239 OE1 REMARK 620 2 ASP A 241 OD1 73.1 REMARK 620 3 GLU A 252 OE2 148.1 75.3 REMARK 620 4 ASN A 264 OD1 69.4 142.1 142.4 REMARK 620 5 ASP A 265 O 132.4 135.6 71.0 77.1 REMARK 620 6 ASP A 265 OD1 78.6 80.0 91.9 97.4 73.2 REMARK 620 7 OJB A1004 O25 77.9 75.0 98.0 92.0 137.1 149.7 REMARK 620 8 OJB A1004 O26 126.8 125.5 76.2 75.8 72.9 146.1 64.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OJB A 1004 DBREF 6YAU A 147 290 UNP P07306 ASGR1_HUMAN 148 291 SEQADV 6YAU MET A 146 UNP P07306 INITIATING METHIONINE SEQADV 6YAU GLY A 291 UNP P07306 EXPRESSION TAG SEQADV 6YAU SER A 292 UNP P07306 EXPRESSION TAG SEQADV 6YAU HIS A 293 UNP P07306 EXPRESSION TAG SEQADV 6YAU HIS A 294 UNP P07306 EXPRESSION TAG SEQADV 6YAU HIS A 295 UNP P07306 EXPRESSION TAG SEQADV 6YAU HIS A 296 UNP P07306 EXPRESSION TAG SEQADV 6YAU HIS A 297 UNP P07306 EXPRESSION TAG SEQADV 6YAU HIS A 298 UNP P07306 EXPRESSION TAG SEQRES 1 A 153 MET GLY SER GLU ARG THR CYS CYS PRO VAL ASN TRP VAL SEQRES 2 A 153 GLU HIS GLU ARG SER CYS TYR TRP PHE SER ARG SER GLY SEQRES 3 A 153 LYS ALA TRP ALA ASP ALA ASP ASN TYR CYS ARG LEU GLU SEQRES 4 A 153 ASP ALA HIS LEU VAL VAL VAL THR SER TRP GLU GLU GLN SEQRES 5 A 153 LYS PHE VAL GLN HIS HIS ILE GLY PRO VAL ASN THR TRP SEQRES 6 A 153 MET GLY LEU HIS ASP GLN ASN GLY PRO TRP LYS TRP VAL SEQRES 7 A 153 ASP GLY THR ASP TYR GLU THR GLY PHE LYS ASN TRP ARG SEQRES 8 A 153 PRO GLU GLN PRO ASP ASP TRP TYR GLY HIS GLY LEU GLY SEQRES 9 A 153 GLY GLY GLU ASP CYS ALA HIS PHE THR ASP ASP GLY ARG SEQRES 10 A 153 TRP ASN ASP ASP VAL CYS GLN ARG PRO TYR ARG TRP VAL SEQRES 11 A 153 CYS GLU THR GLU LEU ASP LYS ALA SER GLN GLU PRO PRO SEQRES 12 A 153 LEU LEU GLY SER HIS HIS HIS HIS HIS HIS HET CA A1001 1 HET CA A1002 1 HET CA A1003 1 HET OJB A1004 22 HETNAM CA CALCIUM ION HETNAM OJB 5-[(2~{R},3~{R},4~{R},5~{R},6~{R})-3-ACETAMIDO-6- HETNAM 2 OJB (HYDROXYMETHYL)-4,5-BIS(OXIDANYL)OXAN-2-YL]OXY-~{N}- HETNAM 3 OJB [3-(PROPANOYLAMINO)PROPYL]PENTANAMIDE FORMUL 2 CA 3(CA 2+) FORMUL 5 OJB C19 H35 N3 O8 FORMUL 6 HOH *174(H2 O) HELIX 1 AA1 ALA A 173 GLU A 184 1 12 HELIX 2 AA2 SER A 193 GLY A 205 1 13 SHEET 1 AA1 5 VAL A 158 HIS A 160 0 SHEET 2 AA1 5 SER A 163 PHE A 167 -1 O TYR A 165 N VAL A 158 SHEET 3 AA1 5 ARG A 273 GLU A 279 -1 O THR A 278 N CYS A 164 SHEET 4 AA1 5 THR A 209 HIS A 214 1 N TRP A 210 O ARG A 273 SHEET 5 AA1 5 LYS A 221 TRP A 222 -1 O LYS A 221 N HIS A 214 SHEET 1 AA2 5 HIS A 187 LEU A 188 0 SHEET 2 AA2 5 ARG A 273 GLU A 279 -1 O GLU A 277 N HIS A 187 SHEET 3 AA2 5 THR A 209 HIS A 214 1 N TRP A 210 O ARG A 273 SHEET 4 AA2 5 CYS A 254 PHE A 257 -1 O PHE A 257 N THR A 209 SHEET 5 AA2 5 TRP A 263 ASP A 266 -1 O ASP A 266 N CYS A 254 SSBOND 1 CYS A 153 CYS A 164 1555 1555 2.05 SSBOND 2 CYS A 181 CYS A 276 1555 1555 2.08 SSBOND 3 CYS A 254 CYS A 268 1555 1555 2.04 LINK O VAL A 190 CA CA A1003 1555 1555 2.41 LINK OE1 GLU A 196 CA CA A1003 1555 1555 2.26 LINK OE2 GLU A 196 CA CA A1003 1555 1555 2.91 LINK OD1 ASP A 215 CA CA A1001 1555 1555 2.43 LINK OD2 ASP A 215 CA CA A1001 1555 1555 2.41 LINK OE1 GLN A 239 CA CA A1002 1555 1555 2.45 LINK OD1 ASP A 241 CA CA A1002 1555 1555 2.44 LINK OD1 ASP A 242 CA CA A1001 1555 1555 2.45 LINK O GLU A 252 CA CA A1001 1555 1555 2.55 LINK OE2 GLU A 252 CA CA A1002 1555 1555 2.41 LINK OD1 ASP A 253 CA CA A1001 1555 1555 2.51 LINK OD1 ASN A 264 CA CA A1002 1555 1555 2.45 LINK O ASP A 265 CA CA A1002 1555 1555 2.52 LINK OD1 ASP A 265 CA CA A1002 1555 1555 2.34 LINK OE1 GLU A 277 CA CA A1003 1555 1555 2.70 LINK OE2 GLU A 277 CA CA A1003 1555 1555 2.39 LINK CA CA A1001 O HOH A1120 1555 1555 2.30 LINK CA CA A1001 O HOH A1148 1555 1555 2.54 LINK CA CA A1001 O HOH A1179 1555 1555 2.54 LINK CA CA A1002 O25 OJB A1004 1555 1555 2.52 LINK CA CA A1002 O26 OJB A1004 1555 1555 2.62 LINK CA CA A1003 O HOH A1130 1555 1555 2.52 LINK CA CA A1003 O HOH A1133 1555 1555 2.37 LINK CA CA A1003 O HOH A1216 1555 1555 2.54 CISPEP 1 GLN A 239 PRO A 240 0 -2.44 SITE 1 AC1 7 ASP A 215 ASP A 242 GLU A 252 ASP A 253 SITE 2 AC1 7 HOH A1120 HOH A1148 HOH A1179 SITE 1 AC2 6 GLN A 239 ASP A 241 GLU A 252 ASN A 264 SITE 2 AC2 6 ASP A 265 OJB A1004 SITE 1 AC3 6 VAL A 190 GLU A 196 GLU A 277 HOH A1130 SITE 2 AC3 6 HOH A1133 HOH A1216 SITE 1 AC4 14 ARG A 236 GLN A 239 ASP A 241 TRP A 243 SITE 2 AC4 14 GLU A 252 ASN A 264 ASP A 265 ASP A 266 SITE 3 AC4 14 CA A1002 HOH A1143 HOH A1166 HOH A1175 SITE 4 AC4 14 HOH A1185 HOH A1196 CRYST1 114.750 32.530 39.650 90.00 93.82 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008715 0.000000 0.000582 0.00000 SCALE2 0.000000 0.030741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025277 0.00000