HEADER SUGAR BINDING PROTEIN 13-MAR-20 6YAU
TITLE CRYSTAL STRUCTURE OF ASGPR 1 IN COMPLEX WITH GN-A.
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ASIALOGLYCOPROTEIN RECEPTOR 1;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: ASGPR 1,C-TYPE LECTIN DOMAIN FAMILY 4 MEMBER H1,HEPATIC
COMPND 5 LECTIN H1,HL-1;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: ASGR1, CLEC4H1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS ASIALOG GLYCOPROTEIN RECEPTOR, LIVER IMAGING, NASH, SUGAR BINDING
KEYWDS 2 PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR H.A.SCHREUDER,A.LIESUM
REVDAT 3 13-NOV-24 6YAU 1 REMARK
REVDAT 2 24-JAN-24 6YAU 1 REMARK
REVDAT 1 13-JAN-21 6YAU 0
JRNL AUTH A.MISHRA,T.R.CASTANEDA,E.BADER,B.ELSHORST,S.CUMMINGS,
JRNL AUTH 2 P.SCHERER,D.S.BANGARI,C.LOEWE,H.SCHREUDER,C.POVERLEIN,
JRNL AUTH 3 M.HELMS,S.JONES,G.ZECH,T.LICHER,M.WAGNER,M.SCHUDOK,
JRNL AUTH 4 M.DE HOOP,A.T.PLOWRIGHT,J.ATZRODT,A.KANNT,I.LAITINEN,
JRNL AUTH 5 V.DERDAU
JRNL TITL TRIANTENNARY GALNAC MOLECULAR IMAGING PROBES FOR MONITORING
JRNL TITL 2 HEPATOCYTE FUNCTION IN A RAT MODEL OF NONALCOHOLIC
JRNL TITL 3 STEATOHEPATITIS.
JRNL REF ADV SCI V. 7 02997 2020
JRNL REFN ESSN 2198-3844
JRNL PMID 33344141
JRNL DOI 10.1002/ADVS.202002997
REMARK 2
REMARK 2 RESOLUTION. 1.40 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.25
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 54.6
REMARK 3 NUMBER OF REFLECTIONS : 16299
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.175
REMARK 3 R VALUE (WORKING SET) : 0.172
REMARK 3 FREE R VALUE : 0.219
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160
REMARK 3 FREE R VALUE TEST SET COUNT : 842
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 42
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.51
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 5.75
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 389
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1999
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 370
REMARK 3 BIN R VALUE (WORKING SET) : 0.1994
REMARK 3 BIN FREE R VALUE : 0.2103
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.88
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 19
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 1077
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 25
REMARK 3 SOLVENT ATOMS : 174
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.70
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.22570
REMARK 3 B22 (A**2) : -0.19560
REMARK 3 B33 (A**2) : -0.03010
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : -0.27350
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.200
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.110
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.111
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.100
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.105
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 1189 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 1634 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 398 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL
REMARK 3 GENERAL PLANES : 211 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 1189 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 134 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : 5 ; 1.000 ; HARMONIC
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 1492 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.01
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL
REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6YAU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAR-20.
REMARK 100 THE DEPOSITION ID IS D_1292107293.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 13-DEC-17
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.50
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SLS
REMARK 200 BEAMLINE : X10SA
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.999910
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : STARANISO
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16299
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.397
REMARK 200 RESOLUTION RANGE LOW (A) : 57.250
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 55.7
REMARK 200 DATA REDUNDANCY : 6.300
REMARK 200 R MERGE (I) : 0.07800
REMARK 200 R SYM (I) : 0.07800
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.1000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56
REMARK 200 COMPLETENESS FOR SHELL (%) : 10.1
REMARK 200 DATA REDUNDANCY IN SHELL : 5.10
REMARK 200 R MERGE FOR SHELL (I) : 0.91200
REMARK 200 R SYM FOR SHELL (I) : 0.91200
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.400
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 1DV8
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 40.08
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN BUFFER: 20 MM TRIS-HCL (PH
REMARK 280 7.4), 25 MM CACL2. RESERVOIR: 100 MM TRIS-HCL (PH 7.5), 28%
REMARK 280 PEG4000, PH 7.50, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.37500
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 16.26500
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.37500
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 16.26500
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 180 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 6920 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A1111 LIES ON A SPECIAL POSITION.
REMARK 375 HOH A1255 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 146
REMARK 465 GLY A 147
REMARK 465 SER A 148
REMARK 465 GLU A 149
REMARK 465 ARG A 150
REMARK 465 THR A 151
REMARK 465 ASP A 281
REMARK 465 LYS A 282
REMARK 465 ALA A 283
REMARK 465 SER A 284
REMARK 465 GLN A 285
REMARK 465 GLU A 286
REMARK 465 PRO A 287
REMARK 465 PRO A 288
REMARK 465 LEU A 289
REMARK 465 LEU A 290
REMARK 465 GLY A 291
REMARK 465 SER A 292
REMARK 465 HIS A 293
REMARK 465 HIS A 294
REMARK 465 HIS A 295
REMARK 465 HIS A 296
REMARK 465 HIS A 297
REMARK 465 HIS A 298
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH A 1234 O HOH A 1234 2556 1.80
REMARK 500 O HOH A 1179 O HOH A 1179 2555 1.85
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 GLU A 161 -72.69 67.13
REMARK 500 ARG A 162 25.69 -159.72
REMARK 500 ASN A 217 58.40 -151.82
REMARK 500 ASN A 234 39.44 -140.36
REMARK 500 GLU A 238 4.27 82.59
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 OJB A 1004
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A1003 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 VAL A 190 O
REMARK 620 2 GLU A 196 OE1 84.6
REMARK 620 3 GLU A 196 OE2 73.3 48.6
REMARK 620 4 GLU A 277 OE1 80.1 89.1 131.0
REMARK 620 5 GLU A 277 OE2 129.7 84.6 128.6 50.8
REMARK 620 6 HOH A1130 O 101.0 161.9 149.5 75.0 78.6
REMARK 620 7 HOH A1133 O 81.9 126.8 78.2 137.7 140.4 71.3
REMARK 620 8 HOH A1216 O 149.4 88.5 79.8 129.7 79.0 94.8 78.5
REMARK 620 N 1 2 3 4 5 6 7
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A1001 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 215 OD1
REMARK 620 2 ASP A 215 OD2 53.5
REMARK 620 3 ASP A 242 OD1 160.0 145.6
REMARK 620 4 GLU A 252 O 90.0 130.5 77.6
REMARK 620 5 ASP A 253 OD1 76.0 119.7 85.2 71.6
REMARK 620 6 HOH A1120 O 106.8 84.4 85.3 75.1 146.6
REMARK 620 7 HOH A1148 O 87.7 79.9 90.8 136.9 66.1 146.0
REMARK 620 8 HOH A1179 O 120.7 70.6 75.7 146.9 124.4 83.6 62.7
REMARK 620 N 1 2 3 4 5 6 7
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CA A1002 CA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLN A 239 OE1
REMARK 620 2 ASP A 241 OD1 73.1
REMARK 620 3 GLU A 252 OE2 148.1 75.3
REMARK 620 4 ASN A 264 OD1 69.4 142.1 142.4
REMARK 620 5 ASP A 265 O 132.4 135.6 71.0 77.1
REMARK 620 6 ASP A 265 OD1 78.6 80.0 91.9 97.4 73.2
REMARK 620 7 OJB A1004 O25 77.9 75.0 98.0 92.0 137.1 149.7
REMARK 620 8 OJB A1004 O26 126.8 125.5 76.2 75.8 72.9 146.1 64.1
REMARK 620 N 1 2 3 4 5 6 7
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1001
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1002
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1003
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OJB A 1004
DBREF 6YAU A 147 290 UNP P07306 ASGR1_HUMAN 148 291
SEQADV 6YAU MET A 146 UNP P07306 INITIATING METHIONINE
SEQADV 6YAU GLY A 291 UNP P07306 EXPRESSION TAG
SEQADV 6YAU SER A 292 UNP P07306 EXPRESSION TAG
SEQADV 6YAU HIS A 293 UNP P07306 EXPRESSION TAG
SEQADV 6YAU HIS A 294 UNP P07306 EXPRESSION TAG
SEQADV 6YAU HIS A 295 UNP P07306 EXPRESSION TAG
SEQADV 6YAU HIS A 296 UNP P07306 EXPRESSION TAG
SEQADV 6YAU HIS A 297 UNP P07306 EXPRESSION TAG
SEQADV 6YAU HIS A 298 UNP P07306 EXPRESSION TAG
SEQRES 1 A 153 MET GLY SER GLU ARG THR CYS CYS PRO VAL ASN TRP VAL
SEQRES 2 A 153 GLU HIS GLU ARG SER CYS TYR TRP PHE SER ARG SER GLY
SEQRES 3 A 153 LYS ALA TRP ALA ASP ALA ASP ASN TYR CYS ARG LEU GLU
SEQRES 4 A 153 ASP ALA HIS LEU VAL VAL VAL THR SER TRP GLU GLU GLN
SEQRES 5 A 153 LYS PHE VAL GLN HIS HIS ILE GLY PRO VAL ASN THR TRP
SEQRES 6 A 153 MET GLY LEU HIS ASP GLN ASN GLY PRO TRP LYS TRP VAL
SEQRES 7 A 153 ASP GLY THR ASP TYR GLU THR GLY PHE LYS ASN TRP ARG
SEQRES 8 A 153 PRO GLU GLN PRO ASP ASP TRP TYR GLY HIS GLY LEU GLY
SEQRES 9 A 153 GLY GLY GLU ASP CYS ALA HIS PHE THR ASP ASP GLY ARG
SEQRES 10 A 153 TRP ASN ASP ASP VAL CYS GLN ARG PRO TYR ARG TRP VAL
SEQRES 11 A 153 CYS GLU THR GLU LEU ASP LYS ALA SER GLN GLU PRO PRO
SEQRES 12 A 153 LEU LEU GLY SER HIS HIS HIS HIS HIS HIS
HET CA A1001 1
HET CA A1002 1
HET CA A1003 1
HET OJB A1004 22
HETNAM CA CALCIUM ION
HETNAM OJB 5-[(2~{R},3~{R},4~{R},5~{R},6~{R})-3-ACETAMIDO-6-
HETNAM 2 OJB (HYDROXYMETHYL)-4,5-BIS(OXIDANYL)OXAN-2-YL]OXY-~{N}-
HETNAM 3 OJB [3-(PROPANOYLAMINO)PROPYL]PENTANAMIDE
FORMUL 2 CA 3(CA 2+)
FORMUL 5 OJB C19 H35 N3 O8
FORMUL 6 HOH *174(H2 O)
HELIX 1 AA1 ALA A 173 GLU A 184 1 12
HELIX 2 AA2 SER A 193 GLY A 205 1 13
SHEET 1 AA1 5 VAL A 158 HIS A 160 0
SHEET 2 AA1 5 SER A 163 PHE A 167 -1 O TYR A 165 N VAL A 158
SHEET 3 AA1 5 ARG A 273 GLU A 279 -1 O THR A 278 N CYS A 164
SHEET 4 AA1 5 THR A 209 HIS A 214 1 N TRP A 210 O ARG A 273
SHEET 5 AA1 5 LYS A 221 TRP A 222 -1 O LYS A 221 N HIS A 214
SHEET 1 AA2 5 HIS A 187 LEU A 188 0
SHEET 2 AA2 5 ARG A 273 GLU A 279 -1 O GLU A 277 N HIS A 187
SHEET 3 AA2 5 THR A 209 HIS A 214 1 N TRP A 210 O ARG A 273
SHEET 4 AA2 5 CYS A 254 PHE A 257 -1 O PHE A 257 N THR A 209
SHEET 5 AA2 5 TRP A 263 ASP A 266 -1 O ASP A 266 N CYS A 254
SSBOND 1 CYS A 153 CYS A 164 1555 1555 2.05
SSBOND 2 CYS A 181 CYS A 276 1555 1555 2.08
SSBOND 3 CYS A 254 CYS A 268 1555 1555 2.04
LINK O VAL A 190 CA CA A1003 1555 1555 2.41
LINK OE1 GLU A 196 CA CA A1003 1555 1555 2.26
LINK OE2 GLU A 196 CA CA A1003 1555 1555 2.91
LINK OD1 ASP A 215 CA CA A1001 1555 1555 2.43
LINK OD2 ASP A 215 CA CA A1001 1555 1555 2.41
LINK OE1 GLN A 239 CA CA A1002 1555 1555 2.45
LINK OD1 ASP A 241 CA CA A1002 1555 1555 2.44
LINK OD1 ASP A 242 CA CA A1001 1555 1555 2.45
LINK O GLU A 252 CA CA A1001 1555 1555 2.55
LINK OE2 GLU A 252 CA CA A1002 1555 1555 2.41
LINK OD1 ASP A 253 CA CA A1001 1555 1555 2.51
LINK OD1 ASN A 264 CA CA A1002 1555 1555 2.45
LINK O ASP A 265 CA CA A1002 1555 1555 2.52
LINK OD1 ASP A 265 CA CA A1002 1555 1555 2.34
LINK OE1 GLU A 277 CA CA A1003 1555 1555 2.70
LINK OE2 GLU A 277 CA CA A1003 1555 1555 2.39
LINK CA CA A1001 O HOH A1120 1555 1555 2.30
LINK CA CA A1001 O HOH A1148 1555 1555 2.54
LINK CA CA A1001 O HOH A1179 1555 1555 2.54
LINK CA CA A1002 O25 OJB A1004 1555 1555 2.52
LINK CA CA A1002 O26 OJB A1004 1555 1555 2.62
LINK CA CA A1003 O HOH A1130 1555 1555 2.52
LINK CA CA A1003 O HOH A1133 1555 1555 2.37
LINK CA CA A1003 O HOH A1216 1555 1555 2.54
CISPEP 1 GLN A 239 PRO A 240 0 -2.44
SITE 1 AC1 7 ASP A 215 ASP A 242 GLU A 252 ASP A 253
SITE 2 AC1 7 HOH A1120 HOH A1148 HOH A1179
SITE 1 AC2 6 GLN A 239 ASP A 241 GLU A 252 ASN A 264
SITE 2 AC2 6 ASP A 265 OJB A1004
SITE 1 AC3 6 VAL A 190 GLU A 196 GLU A 277 HOH A1130
SITE 2 AC3 6 HOH A1133 HOH A1216
SITE 1 AC4 14 ARG A 236 GLN A 239 ASP A 241 TRP A 243
SITE 2 AC4 14 GLU A 252 ASN A 264 ASP A 265 ASP A 266
SITE 3 AC4 14 CA A1002 HOH A1143 HOH A1166 HOH A1175
SITE 4 AC4 14 HOH A1185 HOH A1196
CRYST1 114.750 32.530 39.650 90.00 93.82 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008715 0.000000 0.000582 0.00000
SCALE2 0.000000 0.030741 0.000000 0.00000
SCALE3 0.000000 0.000000 0.025277 0.00000