HEADER HYDROLASE 18-MAR-20 6YCF TITLE STRUCTURE THE BROMELAIN PROTEASE FROM ANANAS COMOSUS IN COMPLEX WITH TITLE 2 THE E64 INHIBITOR CAVEAT 6YCF XYS C 4 HAS WRONG CHIRALITY AT ATOM C1 MAN C 5 HAS WRONG CAVEAT 2 6YCF CHIRALITY AT ATOM C1 FUC C 6 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FBSB; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANANAS COMOSUS; SOURCE 3 ORGANISM_COMMON: PINEAPPLE; SOURCE 4 ORGANISM_TAXID: 4615 KEYWDS CYSTEINE PROTEASE, STEM BROMELAIN PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.AZARKAN,P.CHARLIER,R.HERMAN,F.DELBRASSINE,E.SAUVAGE,N.M RABET, AUTHOR 2 R.CALVO ESPOSITO,F.KERFF REVDAT 2 24-JAN-24 6YCF 1 REMARK REVDAT 1 25-NOV-20 6YCF 0 JRNL AUTH M.AZARKAN,E.MAQUOI,F.DELBRASSINE,R.HERMAN,N.M'RABET, JRNL AUTH 2 R.CALVO ESPOSITO,P.CHARLIER,F.KERFF JRNL TITL STRUCTURES OF THE FREE AND INHIBITORS-BOUND FORMS OF JRNL TITL 2 BROMELAIN AND ANANAIN FROM ANANAS COMOSUS STEM AND IN VITRO JRNL TITL 3 STUDY OF THEIR CYTOTOXICITY. JRNL REF SCI REP V. 10 19570 2020 JRNL REFN ESSN 2045-2322 JRNL PMID 33177555 JRNL DOI 10.1038/S41598-020-76172-5 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 39374 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2095 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2419 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 137 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3310 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 150 REMARK 3 SOLVENT ATOMS : 371 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.26000 REMARK 3 B22 (A**2) : -0.52000 REMARK 3 B33 (A**2) : 0.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.133 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.318 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3625 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4955 ; 1.660 ; 1.669 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 472 ;12.551 ; 5.212 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;30.379 ;22.327 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 539 ;15.029 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.813 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 494 ; 0.140 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2828 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 216 B 2 216 7025 0.100 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 126 REMARK 3 ORIGIN FOR THE GROUP (A): -15.0254 21.4415 10.9947 REMARK 3 T TENSOR REMARK 3 T11: 0.0218 T22: 0.0159 REMARK 3 T33: 0.0496 T12: 0.0028 REMARK 3 T13: -0.0115 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.7077 L22: 0.5831 REMARK 3 L33: 0.3371 L12: 0.5287 REMARK 3 L13: 0.3349 L23: 0.1850 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: -0.0218 S13: 0.0394 REMARK 3 S21: -0.0585 S22: -0.0251 S23: 0.0875 REMARK 3 S31: 0.0243 S32: 0.0406 S33: 0.0210 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 126 REMARK 3 ORIGIN FOR THE GROUP (A): -31.0022 17.1327 -14.3865 REMARK 3 T TENSOR REMARK 3 T11: 0.0139 T22: 0.0244 REMARK 3 T33: 0.0703 T12: -0.0109 REMARK 3 T13: -0.0072 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 0.5524 L22: 0.8334 REMARK 3 L33: 0.8746 L12: -0.6264 REMARK 3 L13: 0.3116 L23: -0.0711 REMARK 3 S TENSOR REMARK 3 S11: -0.0453 S12: 0.0973 S13: 0.0858 REMARK 3 S21: 0.0702 S22: -0.1026 S23: -0.0359 REMARK 3 S31: 0.0497 S32: 0.0655 S33: 0.1480 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6YCF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107390. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47074 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 45.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.6 REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : 2.00200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6YCE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 20% 2-PROPANOL, 0.1 M REMARK 280 CITRATE PH 6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.09500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.09500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.16500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.23500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.16500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.23500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.09500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.16500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.23500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.09500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.16500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 70.23500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 556 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 ALA B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 210 C - N - CD ANGL. DEV. = -25.6 DEGREES REMARK 500 ARG B 115 CB - CG - CD ANGL. DEV. = 18.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 157 -1.93 -147.07 REMARK 500 ASN B 157 -2.44 -146.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6Y6L RELATED DB: PDB DBREF 6YCF A 1 216 UNP O23799 O23799_ANACO 123 338 DBREF 6YCF B 1 216 UNP O23799 O23799_ANACO 123 338 SEQRES 1 A 216 ALA VAL PRO GLN SER ILE ASP TRP ARG ASP TYR GLY ALA SEQRES 2 A 216 VAL THR SER VAL LYS ASN GLN ASN PRO CYS GLY ALA CYS SEQRES 3 A 216 TRP ALA PHE ALA ALA ILE ALA THR VAL GLU SER ILE TYR SEQRES 4 A 216 LYS ILE LYS LYS GLY ILE LEU GLU PRO LEU SER GLU GLN SEQRES 5 A 216 GLN VAL LEU ASP CYS ALA LYS GLY TYR GLY CYS LYS GLY SEQRES 6 A 216 GLY TRP GLU PHE ARG ALA PHE GLU PHE ILE ILE SER ASN SEQRES 7 A 216 LYS GLY VAL ALA SER GLY ALA ILE TYR PRO TYR LYS ALA SEQRES 8 A 216 ALA LYS GLY THR CYS LYS THR ASN GLY VAL PRO ASN SER SEQRES 9 A 216 ALA TYR ILE THR GLY TYR ALA ARG VAL PRO ARG ASN ASN SEQRES 10 A 216 GLU SER SER MET MET TYR ALA VAL SER LYS GLN PRO ILE SEQRES 11 A 216 THR VAL ALA VAL ASP ALA ASN ALA ASN PHE GLN TYR TYR SEQRES 12 A 216 LYS SER GLY VAL PHE ASN GLY PRO CYS GLY THR SER LEU SEQRES 13 A 216 ASN HIS ALA VAL THR ALA ILE GLY TYR GLY GLN ASP SER SEQRES 14 A 216 ASN GLY LYS LYS TYR TRP ILE VAL LYS ASN SER TRP GLY SEQRES 15 A 216 ALA ARG TRP GLY GLU ALA GLY TYR ILE ARG MET ALA ARG SEQRES 16 A 216 ASP VAL SER SER SER SER GLY ILE CYS GLY ILE ALA ILE SEQRES 17 A 216 ASP SER LEU TYR PRO THR LEU GLU SEQRES 1 B 216 ALA VAL PRO GLN SER ILE ASP TRP ARG ASP TYR GLY ALA SEQRES 2 B 216 VAL THR SER VAL LYS ASN GLN ASN PRO CYS GLY ALA CYS SEQRES 3 B 216 TRP ALA PHE ALA ALA ILE ALA THR VAL GLU SER ILE TYR SEQRES 4 B 216 LYS ILE LYS LYS GLY ILE LEU GLU PRO LEU SER GLU GLN SEQRES 5 B 216 GLN VAL LEU ASP CYS ALA LYS GLY TYR GLY CYS LYS GLY SEQRES 6 B 216 GLY TRP GLU PHE ARG ALA PHE GLU PHE ILE ILE SER ASN SEQRES 7 B 216 LYS GLY VAL ALA SER GLY ALA ILE TYR PRO TYR LYS ALA SEQRES 8 B 216 ALA LYS GLY THR CYS LYS THR ASN GLY VAL PRO ASN SER SEQRES 9 B 216 ALA TYR ILE THR GLY TYR ALA ARG VAL PRO ARG ASN ASN SEQRES 10 B 216 GLU SER SER MET MET TYR ALA VAL SER LYS GLN PRO ILE SEQRES 11 B 216 THR VAL ALA VAL ASP ALA ASN ALA ASN PHE GLN TYR TYR SEQRES 12 B 216 LYS SER GLY VAL PHE ASN GLY PRO CYS GLY THR SER LEU SEQRES 13 B 216 ASN HIS ALA VAL THR ALA ILE GLY TYR GLY GLN ASP SER SEQRES 14 B 216 ASN GLY LYS LYS TYR TRP ILE VAL LYS ASN SER TRP GLY SEQRES 15 B 216 ALA ARG TRP GLY GLU ALA GLY TYR ILE ARG MET ALA ARG SEQRES 16 B 216 ASP VAL SER SER SER SER GLY ILE CYS GLY ILE ALA ILE SEQRES 17 B 216 ASP SER LEU TYR PRO THR LEU GLU HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET XYS C 4 9 HET MAN C 5 11 HET FUC C 6 10 HET E64 A 307 25 HET CIT A 308 13 HET NAG B 301 14 HET IPA B 302 4 HET E64 B 303 25 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM XYS ALPHA-D-XYLOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM E64 N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO- HETNAM 2 E64 BUTYL]-GUANIDINE HETNAM CIT CITRIC ACID HETNAM IPA ISOPROPYL ALCOHOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN XYS ALPHA-D-XYLOSE; D-XYLOSE; XYLOSE; XYLOPYRANOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN IPA 2-PROPANOL FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 3 XYS C5 H10 O5 FORMUL 3 MAN C6 H12 O6 FORMUL 3 FUC C6 H12 O5 FORMUL 4 E64 2(C15 H30 N5 O5 1+) FORMUL 5 CIT C6 H8 O7 FORMUL 7 IPA C3 H8 O FORMUL 9 HOH *371(H2 O) HELIX 1 AA1 ARG A 9 GLY A 12 5 4 HELIX 2 AA2 ALA A 25 GLY A 44 1 20 HELIX 3 AA3 SER A 50 ALA A 58 1 9 HELIX 4 AA4 TYR A 61 GLY A 65 5 5 HELIX 5 AA5 TRP A 67 ASN A 78 1 12 HELIX 6 AA6 ASN A 117 GLN A 128 1 12 HELIX 7 AA7 ASN A 137 TYR A 142 1 6 HELIX 8 AA8 GLY A 202 ILE A 206 5 5 HELIX 9 AA9 ARG B 9 GLY B 12 5 4 HELIX 10 AB1 ALA B 25 GLY B 44 1 20 HELIX 11 AB2 SER B 50 ALA B 58 1 9 HELIX 12 AB3 TYR B 61 GLY B 65 5 5 HELIX 13 AB4 TRP B 67 ASN B 78 1 12 HELIX 14 AB5 ASN B 117 GLN B 128 1 12 HELIX 15 AB6 ASN B 137 TYR B 142 1 6 HELIX 16 AB7 GLY B 202 ILE B 206 5 5 SHEET 1 AA1 3 ILE A 6 ASP A 7 0 SHEET 2 AA1 3 HIS A 158 GLN A 167 -1 O TYR A 165 N ILE A 6 SHEET 3 AA1 3 ILE A 130 VAL A 134 -1 N VAL A 134 O HIS A 158 SHEET 1 AA2 5 ILE A 6 ASP A 7 0 SHEET 2 AA2 5 HIS A 158 GLN A 167 -1 O TYR A 165 N ILE A 6 SHEET 3 AA2 5 LYS A 173 LYS A 178 -1 O LYS A 178 N THR A 161 SHEET 4 AA2 5 TYR A 190 ALA A 194 -1 O MET A 193 N TRP A 175 SHEET 5 AA2 5 VAL A 147 PHE A 148 1 N PHE A 148 O ARG A 192 SHEET 1 AA3 2 GLY A 109 ARG A 112 0 SHEET 2 AA3 2 LEU A 211 THR A 214 -1 O TYR A 212 N ALA A 111 SHEET 1 AA4 3 ILE B 6 ASP B 7 0 SHEET 2 AA4 3 HIS B 158 GLN B 167 -1 O TYR B 165 N ILE B 6 SHEET 3 AA4 3 ILE B 130 VAL B 134 -1 N VAL B 134 O HIS B 158 SHEET 1 AA5 5 ILE B 6 ASP B 7 0 SHEET 2 AA5 5 HIS B 158 GLN B 167 -1 O TYR B 165 N ILE B 6 SHEET 3 AA5 5 LYS B 173 LYS B 178 -1 O LYS B 178 N THR B 161 SHEET 4 AA5 5 TYR B 190 ALA B 194 -1 O MET B 193 N TRP B 175 SHEET 5 AA5 5 VAL B 147 PHE B 148 1 N PHE B 148 O ARG B 192 SHEET 1 AA6 2 GLY B 109 VAL B 113 0 SHEET 2 AA6 2 SER B 210 THR B 214 -1 O SER B 210 N VAL B 113 SSBOND 1 CYS A 23 CYS A 63 1555 1555 2.07 SSBOND 2 CYS A 57 CYS A 96 1555 1555 2.07 SSBOND 3 CYS A 152 CYS A 204 1555 1555 2.11 SSBOND 4 CYS B 23 CYS B 63 1555 1555 2.09 SSBOND 5 CYS B 57 CYS B 96 1555 1555 2.10 SSBOND 6 CYS B 152 CYS B 204 1555 1555 2.11 LINK SG CYS A 26 C2 E64 A 307 1555 1555 1.65 LINK ND2 ASN A 117 C1 NAG C 1 1555 1555 1.43 LINK SG CYS B 26 C2 E64 B 303 1555 1555 1.67 LINK ND2 ASN B 117 C1 NAG B 301 1555 1555 1.48 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O3 NAG C 1 C1 FUC C 6 1555 1555 1.40 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.42 LINK O2 BMA C 3 C1 XYS C 4 1555 1555 1.42 LINK O6 BMA C 3 C1 MAN C 5 1555 1555 1.43 CISPEP 1 ASN A 21 PRO A 22 0 1.01 CISPEP 2 GLY A 150 PRO A 151 0 7.85 CISPEP 3 ASN B 21 PRO B 22 0 0.02 CISPEP 4 GLY B 150 PRO B 151 0 7.73 CRYST1 90.330 140.470 84.190 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011071 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007119 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011878 0.00000