HEADER METAL BINDING PROTEIN 20-MAR-20 6YDF TITLE X-RAY STRUCTURE OF LPMO. COMPND MOL_ID: 1; COMPND 2 MOLECULE: LPMO LYTIC POLYSACCHARIDE MONOOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COLLARIELLA VIRESCENS; SOURCE 3 ORGANISM_TAXID: 1934374; SOURCE 4 GENE: AA9; SOURCE 5 EXPRESSION_SYSTEM: ASPERGILLUS ORYZAE; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 5062 KEYWDS LYTIC POLYSACCHARIDE MONOOXYGENASE, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.TANDRUP,T.TRYFONA,K.E.H.FRANDSEN,K.S.JOHANSEN,P.DUPREE,L.LO LEGGIO REVDAT 5 07-FEB-24 6YDF 1 REMARK REVDAT 4 08-MAR-23 6YDF 1 TITLE REVDAT 3 20-APR-22 6YDF 1 COMPND REMARK DBREF LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 23-SEP-20 6YDF 1 JRNL REVDAT 1 16-SEP-20 6YDF 0 JRNL AUTH T.TANDRUP,T.TRYFONA,K.E.H.FRANDSEN,K.S.JOHANSEN,P.DUPREE, JRNL AUTH 2 L.LO LEGGIO JRNL TITL OLIGOSACCHARIDE BINDING AND THERMOSTABILITY OF TWO RELATED JRNL TITL 2 AA9 LYTIC POLYSACCHARIDE MONOOXYGENASES. JRNL REF BIOCHEMISTRY V. 59 3347 2020 JRNL REFN ISSN 0006-2960 JRNL PMID 32818374 JRNL DOI 10.1021/ACS.BIOCHEM.0C00312 REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC V5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 24792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3492 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 239 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YDF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107190. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26050 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.120 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 4.020 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5ACH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NACL, 0.1 M HEPES PH 6.5, 1.5 M REMARK 280 (NH4)2SO4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 19.69500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 225 REMARK 465 ASP A 226 REMARK 465 GLU A 227 REMARK 465 GLY A 228 REMARK 465 CYS A 229 REMARK 465 CYS A 230 REMARK 465 PHE A 231 REMARK 465 ILE A 232 REMARK 465 ASP A 233 REMARK 465 GLY A 234 REMARK 465 VAL A 235 REMARK 465 ASP A 236 REMARK 465 THR A 237 REMARK 465 THR A 238 REMARK 465 SER A 239 REMARK 465 VAL A 240 REMARK 465 LYS A 241 REMARK 465 GLU A 242 REMARK 465 VAL A 243 REMARK 465 VAL A 244 REMARK 465 LYS A 245 REMARK 465 GLN A 246 REMARK 465 ILE A 247 REMARK 465 ILE A 248 REMARK 465 CYS A 249 REMARK 465 VAL A 250 REMARK 465 LEU A 251 REMARK 465 LYS A 252 REMARK 465 GLN B 225 REMARK 465 ASP B 226 REMARK 465 GLU B 227 REMARK 465 GLY B 228 REMARK 465 CYS B 229 REMARK 465 CYS B 230 REMARK 465 PHE B 231 REMARK 465 ILE B 232 REMARK 465 ASP B 233 REMARK 465 GLY B 234 REMARK 465 VAL B 235 REMARK 465 ASP B 236 REMARK 465 THR B 237 REMARK 465 THR B 238 REMARK 465 SER B 239 REMARK 465 VAL B 240 REMARK 465 LYS B 241 REMARK 465 GLU B 242 REMARK 465 VAL B 243 REMARK 465 VAL B 244 REMARK 465 LYS B 245 REMARK 465 GLN B 246 REMARK 465 ILE B 247 REMARK 465 ILE B 248 REMARK 465 CYS B 249 REMARK 465 VAL B 250 REMARK 465 LEU B 251 REMARK 465 LYS B 252 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 181 O HOH A 401 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 108 CD GLU B 108 OE1 0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 16 116.47 -34.22 REMARK 500 ASN A 42 -173.17 70.78 REMARK 500 ARG A 67 -69.38 -101.22 REMARK 500 ASP A 72 -147.03 -100.32 REMARK 500 ILE A 74 -54.56 80.33 REMARK 500 HIS A 79 49.26 -88.83 REMARK 500 ARG A 164 -160.33 -126.18 REMARK 500 VAL A 180 37.21 -155.66 REMARK 500 ASP A 223 -84.38 -110.42 REMARK 500 ASP B 16 118.96 -38.50 REMARK 500 ASN B 42 -170.93 69.82 REMARK 500 ARG B 67 -67.63 -101.77 REMARK 500 ASP B 72 -149.85 -98.59 REMARK 500 ILE B 74 -55.02 83.06 REMARK 500 HIS B 79 46.70 -87.95 REMARK 500 ARG B 164 -163.22 -124.96 REMARK 500 VAL B 180 64.13 -157.94 REMARK 500 ASP B 223 -87.99 -111.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 180 GLY A 181 -145.50 REMARK 500 VAL B 180 GLY B 181 -148.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 67 0.09 SIDE CHAIN REMARK 500 ARG A 70 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 538 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 539 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A 540 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A 541 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A 542 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A 543 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH A 544 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH A 546 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH A 548 DISTANCE = 7.11 ANGSTROMS REMARK 525 HOH A 549 DISTANCE = 7.91 ANGSTROMS REMARK 525 HOH A 550 DISTANCE = 8.31 ANGSTROMS REMARK 525 HOH A 551 DISTANCE = 8.62 ANGSTROMS REMARK 525 HOH B 487 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH B 488 DISTANCE = 7.62 ANGSTROMS REMARK 525 HOH B 489 DISTANCE = 8.09 ANGSTROMS REMARK 525 HOH B 490 DISTANCE = 10.52 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 301 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 79 NE2 REMARK 620 2 TYR A 169 OH 101.7 REMARK 620 3 HIC A 302 N 100.8 78.2 REMARK 620 4 HIC A 302 ND1 161.0 96.7 87.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 301 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 79 NE2 REMARK 620 2 TYR B 169 OH 107.1 REMARK 620 3 HIC B 302 N 106.9 80.3 REMARK 620 4 HIC B 302 ND1 152.5 98.2 87.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HIC A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HIC B 302 and THR B REMARK 800 2 DBREF1 6YDF A 302 252 UNP A0A223GEC9_9PEZI DBREF2 6YDF A A0A223GEC9 23 274 DBREF1 6YDF B 302 252 UNP A0A223GEC9_9PEZI DBREF2 6YDF B A0A223GEC9 23 274 SEQRES 1 A 252 HIC THR ARG MET PHE SER VAL TRP VAL ASN GLY VAL ASP SEQRES 2 A 252 GLN GLY ASP GLY GLN ASN VAL TYR ILE ARG THR PRO PRO SEQRES 3 A 252 ASN THR ASP PRO ILE LYS ASP LEU ALA SER PRO ALA LEU SEQRES 4 A 252 ALA CYS ASN VAL LYS GLY GLY GLU PRO VAL PRO GLN PHE SEQRES 5 A 252 VAL SER ALA SER ALA GLY ASP LYS LEU THR PHE GLU TRP SEQRES 6 A 252 TYR ARG VAL LYS ARG GLY ASP ASP ILE ILE ASP PRO SER SEQRES 7 A 252 HIS SER GLY PRO ILE THR THR TRP ILE ALA ALA PHE THR SEQRES 8 A 252 SER PRO THR MET ASP GLY THR GLY PRO VAL TRP SER LYS SEQRES 9 A 252 ILE HIS GLU GLU GLY TYR ASP ALA SER THR LYS SER TRP SEQRES 10 A 252 ALA VAL ASP LYS LEU ILE ALA ASN LYS GLY MET TRP ASP SEQRES 11 A 252 PHE THR LEU PRO SER GLN LEU LYS PRO GLY LYS TYR MET SEQRES 12 A 252 LEU ARG GLN GLU ILE VAL ALA HIS HIS GLU SER ASP ALA SEQRES 13 A 252 THR PHE ASP LYS ASN PRO LYS ARG GLY ALA GLN PHE TYR SEQRES 14 A 252 PRO SER CYS VAL GLN VAL ASP VAL LYS GLY VAL GLY GLY SEQRES 15 A 252 ASP ALA VAL PRO ASP GLN ALA PHE ASP PHE ASN LYS GLY SEQRES 16 A 252 TYR LYS TYR SER ASP PRO GLY ILE ALA PHE ASP MET TYR SEQRES 17 A 252 THR ASP PHE ASP SER TYR PRO ILE PRO GLY PRO PRO VAL SEQRES 18 A 252 TRP ASP ALA GLN ASP GLU GLY CYS CYS PHE ILE ASP GLY SEQRES 19 A 252 VAL ASP THR THR SER VAL LYS GLU VAL VAL LYS GLN ILE SEQRES 20 A 252 ILE CYS VAL LEU LYS SEQRES 1 B 252 HIC THR ARG MET PHE SER VAL TRP VAL ASN GLY VAL ASP SEQRES 2 B 252 GLN GLY ASP GLY GLN ASN VAL TYR ILE ARG THR PRO PRO SEQRES 3 B 252 ASN THR ASP PRO ILE LYS ASP LEU ALA SER PRO ALA LEU SEQRES 4 B 252 ALA CYS ASN VAL LYS GLY GLY GLU PRO VAL PRO GLN PHE SEQRES 5 B 252 VAL SER ALA SER ALA GLY ASP LYS LEU THR PHE GLU TRP SEQRES 6 B 252 TYR ARG VAL LYS ARG GLY ASP ASP ILE ILE ASP PRO SER SEQRES 7 B 252 HIS SER GLY PRO ILE THR THR TRP ILE ALA ALA PHE THR SEQRES 8 B 252 SER PRO THR MET ASP GLY THR GLY PRO VAL TRP SER LYS SEQRES 9 B 252 ILE HIS GLU GLU GLY TYR ASP ALA SER THR LYS SER TRP SEQRES 10 B 252 ALA VAL ASP LYS LEU ILE ALA ASN LYS GLY MET TRP ASP SEQRES 11 B 252 PHE THR LEU PRO SER GLN LEU LYS PRO GLY LYS TYR MET SEQRES 12 B 252 LEU ARG GLN GLU ILE VAL ALA HIS HIS GLU SER ASP ALA SEQRES 13 B 252 THR PHE ASP LYS ASN PRO LYS ARG GLY ALA GLN PHE TYR SEQRES 14 B 252 PRO SER CYS VAL GLN VAL ASP VAL LYS GLY VAL GLY GLY SEQRES 15 B 252 ASP ALA VAL PRO ASP GLN ALA PHE ASP PHE ASN LYS GLY SEQRES 16 B 252 TYR LYS TYR SER ASP PRO GLY ILE ALA PHE ASP MET TYR SEQRES 17 B 252 THR ASP PHE ASP SER TYR PRO ILE PRO GLY PRO PRO VAL SEQRES 18 B 252 TRP ASP ALA GLN ASP GLU GLY CYS CYS PHE ILE ASP GLY SEQRES 19 B 252 VAL ASP THR THR SER VAL LYS GLU VAL VAL LYS GLN ILE SEQRES 20 B 252 ILE CYS VAL LEU LYS MODRES 6YDF HIC A 302 HIS MODIFIED RESIDUE MODRES 6YDF HIC B 302 HIS MODIFIED RESIDUE HET HIC A 302 11 HET HIC B 302 11 HET CU A 301 1 HET SO4 A 303 5 HET SO4 A 304 5 HET CU B 301 1 HET SO4 B 303 5 HETNAM HIC 4-METHYL-HISTIDINE HETNAM CU COPPER (II) ION HETNAM SO4 SULFATE ION FORMUL 1 HIC 2(C7 H11 N3 O2) FORMUL 3 CU 2(CU 2+) FORMUL 4 SO4 3(O4 S 2-) FORMUL 8 HOH *239(H2 O) HELIX 1 AA1 SER A 36 ALA A 40 5 5 HELIX 2 AA2 ALA A 118 ASN A 125 1 8 HELIX 3 AA3 ASP A 191 TYR A 196 1 6 HELIX 4 AA4 PRO B 37 ASN B 42 1 6 HELIX 5 AA5 ALA B 118 ASN B 125 1 8 HELIX 6 AA6 ASP B 191 TYR B 196 1 6 SHEET 1 AA1 4 VAL A 12 ASP A 13 0 SHEET 2 AA1 4 ARG A 3 VAL A 9 -1 N VAL A 9 O VAL A 12 SHEET 3 AA1 4 LYS A 60 TYR A 66 -1 O GLU A 64 N PHE A 5 SHEET 4 AA1 4 MET A 128 THR A 132 -1 O TRP A 129 N PHE A 63 SHEET 1 AA2 5 VAL A 53 SER A 56 0 SHEET 2 AA2 5 GLN A 167 LYS A 178 1 O ASP A 176 N VAL A 53 SHEET 3 AA2 5 GLY A 140 ALA A 150 -1 N LEU A 144 O VAL A 173 SHEET 4 AA2 5 ILE A 83 ALA A 89 -1 N TRP A 86 O ARG A 145 SHEET 5 AA2 5 SER A 103 GLU A 108 -1 O HIS A 106 N THR A 85 SHEET 1 AA3 2 TYR A 110 ASP A 111 0 SHEET 2 AA3 2 SER A 116 TRP A 117 -1 O SER A 116 N ASP A 111 SHEET 1 AA4 4 VAL B 12 ASP B 13 0 SHEET 2 AA4 4 ARG B 3 VAL B 9 -1 N VAL B 9 O VAL B 12 SHEET 3 AA4 4 LYS B 60 TYR B 66 -1 O GLU B 64 N PHE B 5 SHEET 4 AA4 4 MET B 128 THR B 132 -1 O PHE B 131 N LEU B 61 SHEET 1 AA5 5 VAL B 53 SER B 56 0 SHEET 2 AA5 5 GLN B 167 LYS B 178 1 O ASP B 176 N VAL B 53 SHEET 3 AA5 5 GLY B 140 ALA B 150 -1 N LEU B 144 O VAL B 173 SHEET 4 AA5 5 ILE B 83 ALA B 89 -1 N TRP B 86 O ARG B 145 SHEET 5 AA5 5 SER B 103 GLU B 108 -1 O HIS B 106 N THR B 85 SHEET 1 AA6 2 TYR B 110 ASP B 111 0 SHEET 2 AA6 2 SER B 116 TRP B 117 -1 O SER B 116 N ASP B 111 SSBOND 1 CYS A 41 CYS A 172 1555 1555 2.16 SSBOND 2 CYS B 41 CYS B 172 1555 1555 2.11 LINK N THR A 2 C HIC A 302 1555 1555 1.34 LINK N THR B 2 C HIC B 302 1555 1555 1.34 LINK NE2 HIS A 79 CU CU A 301 1555 1555 2.09 LINK OH TYR A 169 CU CU A 301 1555 1555 2.65 LINK CU CU A 301 N HIC A 302 1555 1555 2.03 LINK CU CU A 301 ND1 HIC A 302 1555 1555 2.00 LINK NE2 HIS B 79 CU CU B 301 1555 1555 2.06 LINK OH TYR B 169 CU CU B 301 1555 1555 2.61 LINK CU CU B 301 N HIC B 302 1555 1555 2.01 LINK CU CU B 301 ND1 HIC B 302 1555 1555 2.01 SITE 1 AC1 5 HIS A 79 GLN A 167 TYR A 169 HIC A 302 SITE 2 AC1 5 HOH A 498 SITE 1 AC2 10 THR A 2 THR A 28 ASP A 29 ARG A 67 SITE 2 AC2 10 ILE A 74 ILE A 75 HIS A 79 TYR A 169 SITE 3 AC2 10 CU A 301 HOH A 457 SITE 1 AC3 6 HIS A 79 HIS A 152 GLU A 153 GLN A 167 SITE 2 AC3 6 HOH A 417 HOH A 452 SITE 1 AC4 4 LYS A 197 TYR A 198 SER A 199 HOH A 432 SITE 1 AC5 4 HIS B 79 GLN B 167 TYR B 169 HIC B 302 SITE 1 AC6 3 LYS B 197 TYR B 198 SER B 199 SITE 1 AC7 11 ARG B 3 THR B 28 ASP B 29 TYR B 66 SITE 2 AC7 11 ARG B 67 ILE B 74 ILE B 75 HIS B 79 SITE 3 AC7 11 TYR B 169 CU B 301 HOH B 427 CRYST1 51.120 39.390 119.930 90.00 93.78 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019562 0.000000 0.001291 0.00000 SCALE2 0.000000 0.025387 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008356 0.00000 HETATM 1 N HIC A 302 -23.762 -7.134 45.281 1.00 17.78 N HETATM 2 CA HIC A 302 -22.870 -8.170 45.987 1.00 17.79 C HETATM 3 C HIC A 302 -21.612 -8.689 45.271 1.00 17.61 C HETATM 4 O HIC A 302 -21.681 -9.368 44.238 1.00 18.55 O HETATM 5 CB HIC A 302 -23.791 -9.286 46.419 1.00 17.77 C HETATM 6 CG HIC A 302 -24.928 -8.783 47.336 1.00 18.96 C HETATM 7 ND1 HIC A 302 -25.831 -7.820 46.993 1.00 18.50 N HETATM 8 CD2 HIC A 302 -25.271 -9.227 48.609 1.00 18.51 C HETATM 9 CE1 HIC A 302 -26.683 -7.651 47.987 1.00 19.29 C HETATM 10 NE2 HIC A 302 -26.370 -8.533 48.969 1.00 19.02 N HETATM 11 CZ HIC A 302 -27.129 -8.602 50.251 1.00 18.17 C