HEADER METAL BINDING PROTEIN 20-MAR-20 6YDG TITLE X-RAY STRUCTURE OF LPMO COMPND MOL_ID: 1; COMPND 2 MOLECULE: AUXILIARY ACTIVITY 9; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LENTINUS SIMILIS; SOURCE 3 ORGANISM_TAXID: 1755448; SOURCE 4 EXPRESSION_SYSTEM: ASPERGILLUS ORYZAE; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 5062 KEYWDS LYTIC POLYSACCHARIDE MONOOXYGENASE, COMPLEX, CELLOTETRAOSE, METAL KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.TANDRUP,T.TRYFONA,K.E.H.FRANDSEN,K.S.JOHANSEN,P.DUPREE,L.LO LEGGIO REVDAT 3 24-JAN-24 6YDG 1 REMARK REVDAT 2 23-SEP-20 6YDG 1 JRNL REVDAT 1 16-SEP-20 6YDG 0 JRNL AUTH T.TANDRUP,T.TRYFONA,K.E.H.FRANDSEN,K.S.JOHANSEN,P.DUPREE, JRNL AUTH 2 L.LO LEGGIO JRNL TITL OLIGOSACCHARIDE BINDING AND THERMOSTABILITY OF TWO RELATED JRNL TITL 2 AA9 LYTIC POLYSACCHARIDE MONOOXYGENASES. JRNL REF BIOCHEMISTRY V. 59 3347 2020 JRNL REFN ISSN 0006-2960 JRNL PMID 32818374 JRNL DOI 10.1021/ACS.BIOCHEM.0C00312 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC V5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25939 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1788 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YDG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107191. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27327 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 17.14 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.3200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5ACH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.3 M NACL, 0.1 M CITRIC ACID PH 3.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 62.83500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.83500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.83500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.83500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 62.83500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.83500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 62.83500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 62.83500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 62.83500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 62.83500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 62.83500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 62.83500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 62.83500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 62.83500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 62.83500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 62.83500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 62.83500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 62.83500 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 94.25250 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 31.41750 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 31.41750 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 94.25250 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 94.25250 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 94.25250 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 31.41750 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 31.41750 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 94.25250 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 31.41750 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 94.25250 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 31.41750 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 94.25250 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 31.41750 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 31.41750 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 31.41750 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 94.25250 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 31.41750 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 94.25250 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 94.25250 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 94.25250 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 31.41750 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 31.41750 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 94.25250 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 94.25250 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 31.41750 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 31.41750 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 31.41750 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 31.41750 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 94.25250 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 31.41750 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 94.25250 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 31.41750 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 94.25250 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 94.25250 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 94.25250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 566 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 568 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 587 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 595 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 598 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 44 O HOH A 402 1.99 REMARK 500 O HOH A 524 O HOH A 557 2.13 REMARK 500 O HOH A 534 O HOH A 578 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 19 25.01 45.44 REMARK 500 ASN A 42 -173.98 74.65 REMARK 500 HIS A 66 -69.44 -100.85 REMARK 500 ASP A 71 -134.16 -91.09 REMARK 500 ILE A 73 -61.57 89.36 REMARK 500 HIS A 78 40.35 -83.48 REMARK 500 ASN A 92 27.85 44.78 REMARK 500 ALA A 105 -76.85 -106.34 REMARK 500 ARG A 159 -163.60 -126.48 REMARK 500 ASN A 173 -71.50 -92.94 REMARK 500 ALA A 227 145.02 -177.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 69 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 590 DISTANCE = 7.71 ANGSTROMS REMARK 525 HOH A 591 DISTANCE = 8.64 ANGSTROMS REMARK 525 HOH A 593 DISTANCE = 8.76 ANGSTROMS REMARK 525 HOH A 595 DISTANCE = 9.86 ANGSTROMS REMARK 525 HOH A 597 DISTANCE = 12.62 ANGSTROMS REMARK 525 HOH A 598 DISTANCE = 13.69 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 301 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIC A 1 N REMARK 620 2 HIC A 1 ND1 98.8 REMARK 620 3 HIS A 78 NE2 102.4 154.4 REMARK 620 4 TYR A 164 OH 82.5 92.9 103.9 REMARK 620 5 HOH A 401 O 162.8 98.4 61.0 96.5 REMARK 620 N 1 2 3 4 DBREF1 6YDG A 1 235 UNP A0A0S2GKZ1_9APHY DBREF2 6YDG A A0A0S2GKZ1 20 254 SEQRES 1 A 235 HIC THR LEU VAL TRP GLY VAL TRP VAL ASN GLY VAL ASP SEQRES 2 A 235 GLN GLY ASP GLY ARG ASN ILE TYR ILE ARG SER PRO PRO SEQRES 3 A 235 ASN ASN ASN PRO VAL LYS ASN LEU THR SER PRO ASP MET SEQRES 4 A 235 THR CYS ASN VAL ASP ASN ARG VAL VAL PRO LYS SER VAL SEQRES 5 A 235 PRO VAL ASN ALA GLY ASP THR LEU THR PHE GLU TRP TYR SEQRES 6 A 235 HIS ASN THR ARG ASP ASP ASP ILE ILE ALA SER SER HIS SEQRES 7 A 235 HIS GLY PRO ILE ALA VAL TYR ILE ALA PRO ALA ALA SER SEQRES 8 A 235 ASN GLY GLN GLY ASN VAL TRP VAL LYS LEU PHE GLU ASP SEQRES 9 A 235 ALA TYR ASN VAL THR ASN SER THR TRP ALA VAL ASP ARG SEQRES 10 A 235 LEU ILE THR ALA HIS GLY GLN HIS SER VAL VAL VAL PRO SEQRES 11 A 235 HIS VAL ALA PRO GLY ASP TYR LEU PHE ARG ALA GLU ILE SEQRES 12 A 235 ILE ALA LEU HIS GLU ALA ASP SER LEU TYR SER GLN ASN SEQRES 13 A 235 PRO ILE ARG GLY ALA GLN PHE TYR ILE SER CYS ALA GLN SEQRES 14 A 235 ILE THR ILE ASN SER SER ASP ASP SER THR PRO LEU PRO SEQRES 15 A 235 ALA GLY VAL PRO PHE PRO GLY ALA TYR THR ASP SER THR SEQRES 16 A 235 PRO GLY ILE GLN PHE ASN ILE TYR THR THR PRO ALA THR SEQRES 17 A 235 SER TYR VAL ALA PRO PRO PRO SER VAL TRP SER GLY ALA SEQRES 18 A 235 LEU GLY GLY SER ILE ALA GLN VAL GLY ASP ALA SER LEU SEQRES 19 A 235 GLU MODRES 6YDG HIC A 1 HIS MODIFIED RESIDUE HET HIC A 1 11 HET BGC B 1 12 HET BGC B 2 11 HET BGC B 3 11 HET BGC B 4 11 HET CU A 301 1 HET NAG A 302 14 HET CL A 307 1 HETNAM HIC 4-METHYL-HISTIDINE HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM CU COPPER (II) ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CL CHLORIDE ION HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 1 HIC C7 H11 N3 O2 FORMUL 2 BGC 4(C6 H12 O6) FORMUL 3 CU CU 2+ FORMUL 4 NAG C8 H15 N O6 FORMUL 5 CL CL 1- FORMUL 6 HOH *194(H2 O) HELIX 1 AA1 SER A 36 THR A 40 5 5 HELIX 2 AA2 ALA A 90 ASN A 92 5 3 HELIX 3 AA3 ALA A 114 ALA A 121 1 8 HELIX 4 AA4 ASP A 231 GLU A 235 5 5 SHEET 1 AA1 5 VAL A 12 ASP A 13 0 SHEET 2 AA1 5 LEU A 3 VAL A 9 -1 N VAL A 9 O VAL A 12 SHEET 3 AA1 5 THR A 59 TYR A 65 -1 O GLU A 63 N TRP A 5 SHEET 4 AA1 5 GLN A 124 VAL A 128 -1 O HIS A 125 N PHE A 62 SHEET 5 AA1 5 GLY A 224 ILE A 226 -1 O SER A 225 N SER A 126 SHEET 1 AA2 5 VAL A 52 VAL A 54 0 SHEET 2 AA2 5 GLN A 162 ILE A 172 1 O THR A 171 N VAL A 52 SHEET 3 AA2 5 GLY A 135 ALA A 145 -1 N PHE A 139 O ALA A 168 SHEET 4 AA2 5 ILE A 82 PRO A 88 -1 N ALA A 83 O GLU A 142 SHEET 5 AA2 5 VAL A 99 ASP A 104 -1 O LEU A 101 N VAL A 84 SHEET 1 AA3 2 TYR A 106 ASN A 107 0 SHEET 2 AA3 2 THR A 112 TRP A 113 -1 O THR A 112 N ASN A 107 SSBOND 1 CYS A 41 CYS A 167 1555 1555 2.02 LINK C HIC A 1 N THR A 2 1555 1555 1.35 LINK ND2 ASN A 33 C1 NAG A 302 1555 1555 1.44 LINK O4 BGC B 1 C1 BGC B 2 1555 1555 1.42 LINK O4 BGC B 2 C1 BGC B 3 1555 1555 1.40 LINK O4 BGC B 3 C1 BGC B 4 1555 1555 1.40 LINK N HIC A 1 CU CU A 301 1555 1555 2.11 LINK ND1 HIC A 1 CU CU A 301 1555 1555 1.97 LINK NE2 HIS A 78 CU CU A 301 1555 1555 2.02 LINK OH TYR A 164 CU CU A 301 1555 1555 2.68 LINK CU CU A 301 O HOH A 401 1555 1555 1.82 CISPEP 1 PHE A 187 PRO A 188 0 -4.34 CISPEP 2 PRO A 214 PRO A 215 0 9.92 CRYST1 125.670 125.670 125.670 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007957 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007957 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007957 0.00000 HETATM 1 N HIC A 1 -5.675 -4.622 18.186 1.00 25.97 N HETATM 2 CA HIC A 1 -5.389 -4.317 16.752 1.00 25.87 C HETATM 3 C HIC A 1 -4.192 -5.115 16.210 1.00 25.36 C HETATM 4 O HIC A 1 -3.054 -4.877 16.633 1.00 29.89 O HETATM 5 CB HIC A 1 -5.259 -2.784 16.707 1.00 25.49 C HETATM 6 CG HIC A 1 -6.513 -1.960 16.965 1.00 27.27 C HETATM 7 ND1 HIC A 1 -7.210 -1.931 18.107 1.00 25.58 N HETATM 8 CD2 HIC A 1 -7.186 -1.049 16.121 1.00 26.88 C HETATM 9 CE1 HIC A 1 -8.223 -1.106 18.000 1.00 25.96 C HETATM 10 NE2 HIC A 1 -8.217 -0.533 16.793 1.00 25.24 N HETATM 11 CZ HIC A 1 -9.307 0.489 16.483 1.00 28.36 C